Wall clock time and date at job start Tue Mar 31 2020 20:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 C 1.52997 * 109.47212 * 124.99896 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 3 7 7 N 1.46907 * 109.47483 * 180.02562 * 6 5 4 8 8 C 1.47504 * 110.99941 * 69.87321 * 7 6 5 9 9 C 1.54458 * 107.25952 * 123.21931 * 8 7 6 10 10 C 1.54311 * 102.94803 * 21.54431 * 9 8 7 11 11 C 1.47993 * 111.00125 * 190.76816 * 7 6 5 12 12 C 1.52026 * 110.64710 * 207.01227 * 10 9 8 13 13 N 1.46272 * 109.96967 * 283.57481 * 12 10 9 14 14 C 1.46508 * 118.81305 * 162.92825 * 13 12 10 15 15 C 1.52996 * 109.47122 * 89.99951 * 14 13 12 16 16 C 1.50706 * 109.46805 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00149 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99827 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99868 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99612 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47066 * 90.00269 * 20 18 16 22 22 H 1.48507 * 109.47161 * 210.00052 * 20 18 16 23 23 H 1.48498 * 109.47657 * 330.00400 * 20 18 16 24 24 C 1.33842 * 122.37274 * 342.89939 * 13 12 10 25 25 O 1.21285 * 118.61868 * 182.71608 * 24 13 12 26 26 C 1.50274 * 122.75783 * 2.73912 * 24 13 12 27 27 O 1.42106 * 110.68748 * 83.57185 * 10 9 8 28 28 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 32 32 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 33 33 H 1.09002 * 109.47153 * 299.99998 * 4 3 2 34 34 H 1.08998 * 109.47533 * 59.99628 * 4 3 2 35 35 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 36 36 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 37 37 H 1.09002 * 109.47153 * 300.00216 * 6 5 4 38 38 H 1.09001 * 109.47289 * 60.00300 * 6 5 4 39 39 H 1.09000 * 109.88430 * 242.63274 * 8 7 6 40 40 H 1.09004 * 109.88303 * 3.80219 * 8 7 6 41 41 H 1.09002 * 110.71748 * 139.90996 * 9 8 7 42 42 H 1.08997 * 110.72203 * 263.17839 * 9 8 7 43 43 H 1.08997 * 110.38591 * 333.27249 * 11 7 6 44 44 H 1.09002 * 110.38958 * 95.64485 * 11 7 6 45 45 H 1.08999 * 109.38979 * 43.72772 * 12 10 9 46 46 H 1.09005 * 109.38710 * 163.52058 * 12 10 9 47 47 H 1.08996 * 109.46356 * 209.99870 * 14 13 12 48 48 H 1.08998 * 109.46565 * 329.99643 * 14 13 12 49 49 H 1.09003 * 109.47099 * 299.99856 * 15 14 13 50 50 H 1.08994 * 109.47328 * 59.99992 * 15 14 13 51 51 H 0.97002 * 119.99196 * 179.97438 * 19 18 16 52 52 H 1.08998 * 109.38799 * 103.40815 * 26 24 13 53 53 H 1.08993 * 109.39247 * 223.21765 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6578 1.1813 6 6 4.7714 2.6861 2.3633 7 7 5.5060 3.9584 2.3633 8 6 4.6175 5.0817 2.7162 9 6 5.2349 5.7860 3.9445 10 6 6.7162 5.3586 3.8797 11 6 6.6281 3.9229 3.3276 12 6 7.3376 5.3666 5.2672 13 7 7.6211 6.7410 5.6797 14 6 7.8619 7.0170 7.0982 15 6 9.3560 6.8805 7.3979 16 6 9.6037 7.1651 8.8569 17 1 8.7780 7.4176 9.5056 18 6 10.8844 7.1020 9.3639 19 7 11.8898 6.7939 8.5740 20 14 11.1915 7.4554 11.1722 21 1 11.0888 6.1931 11.9477 22 1 12.5503 8.0306 11.3404 23 1 10.1796 8.4235 11.6662 24 6 7.6690 7.7554 4.8079 25 8 7.9591 8.8597 5.2169 26 6 7.3781 7.5836 3.3436 27 8 7.4426 6.1979 2.9924 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 2.6213 1.4026 -0.9314 32 1 1.3585 2.1317 0.0896 33 1 2.4772 1.2357 2.1130 34 1 3.7399 0.5067 1.0922 35 1 4.3582 2.7549 0.2499 36 1 3.0957 3.4846 1.2707 37 1 4.2132 2.5893 3.2945 38 1 5.4762 1.8594 2.2744 39 1 4.5535 5.7801 1.8817 40 1 3.6250 4.7055 2.9645 41 1 5.1416 6.8684 3.8557 42 1 4.7714 5.4322 4.8653 43 1 6.4151 3.2193 4.1323 44 1 7.5552 3.6532 2.8217 45 1 6.6459 4.9114 5.9761 46 1 8.2664 4.7962 5.2510 47 1 7.5357 8.0305 7.3315 48 1 7.3028 6.3062 7.7066 49 1 9.6822 5.8669 7.1645 50 1 9.9151 7.5912 6.7894 51 1 12.7908 6.7499 8.9306 52 1 6.3810 7.9661 3.1255 53 1 8.1138 8.1378 2.7610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273494752.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:21 Heat of formation + Delta-G solvation = -61.121047 kcal Electronic energy + Delta-G solvation = -29436.905761 eV Core-core repulsion = 25501.749147 eV Total energy + Delta-G solvation = -3935.156615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.09421 -39.03893 -37.34091 -36.32084 -35.45392 -33.69186 -33.03830 -31.30617 -30.12748 -29.93112 -28.05481 -27.35013 -25.46858 -24.53840 -23.76999 -22.07185 -21.62298 -20.92722 -20.46640 -20.06407 -18.30391 -17.67950 -16.79614 -16.37617 -16.18938 -15.99326 -15.73178 -15.46374 -15.09825 -14.56911 -14.50863 -14.32184 -14.23693 -13.83616 -13.59151 -13.44387 -13.23613 -12.96210 -12.70556 -12.69981 -12.49758 -12.41779 -12.13476 -11.98728 -11.69951 -11.48558 -11.39222 -11.31538 -11.23234 -11.11157 -10.97974 -10.91018 -10.80757 -10.67312 -10.23065 -9.90550 -9.83216 -9.73500 -9.31215 -8.97171 -8.57081 -8.35943 -8.11800 -6.00879 -4.04276 1.86339 2.89374 3.16744 3.31434 3.38019 3.41901 3.53780 3.59384 4.24245 4.32472 4.37787 4.45225 4.50427 4.58359 4.66702 4.70885 4.75793 4.97937 4.99239 5.06229 5.09917 5.13105 5.19403 5.29456 5.35139 5.36177 5.38694 5.41679 5.42605 5.44898 5.51227 5.58118 5.60035 5.62194 5.68732 5.78620 5.88233 5.93831 6.00029 6.05096 6.21313 6.35361 6.47614 6.62560 6.71801 6.80111 6.84475 6.96660 7.58640 7.70529 7.91601 7.99126 8.34389 8.50829 9.02139 9.59445 11.10515 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.001924 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.647573 B =14552.033085 C =15297.985417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.095 4.095 4 C -0.114 4.114 5 C -0.115 4.115 6 C 0.048 3.952 7 N -0.523 5.523 8 C 0.049 3.951 9 C -0.171 4.171 10 C 0.095 3.905 11 C 0.063 3.937 12 C 0.099 3.901 13 N -0.596 5.596 14 C 0.114 3.886 15 C 0.014 3.986 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.479 3.521 25 O -0.538 6.538 26 C 0.049 3.951 27 O -0.344 6.344 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.015 0.985 50 H 0.023 0.977 51 H 0.261 0.739 52 H 0.085 0.915 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.861 -12.468 -17.665 30.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.171 4.171 3 C -0.132 4.132 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.080 4.080 7 N -0.247 5.247 8 C -0.079 4.079 9 C -0.209 4.209 10 C 0.054 3.946 11 C -0.065 4.065 12 C -0.025 4.025 13 N -0.329 5.329 14 C -0.006 4.006 15 C -0.024 4.024 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.266 3.734 25 O -0.416 6.416 26 C -0.030 4.030 27 O -0.262 6.262 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.033 0.967 50 H 0.041 0.959 51 H 0.070 0.930 52 H 0.102 0.898 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.233 -11.918 -18.119 29.660 hybrid contribution -0.152 0.025 2.065 2.071 sum -20.385 -11.893 -16.053 28.543 Atomic orbital electron populations 1.23865 0.96041 1.01802 1.01834 1.23010 0.96048 0.98677 0.99326 1.20777 0.98210 0.95184 0.99046 1.21505 0.97777 0.97816 0.98146 1.21581 0.97531 0.97098 0.99031 1.22340 0.96216 0.91975 0.97439 1.63639 1.09144 1.03179 1.48744 1.22825 0.95043 0.93324 0.96660 1.23388 0.95589 1.02425 0.99541 1.22140 0.90744 0.92337 0.89412 1.22850 0.96238 0.92910 0.94491 1.21820 1.01507 0.84809 0.94399 1.47700 1.68889 1.06597 1.09694 1.21952 1.00913 1.01160 0.76603 1.19352 0.88797 0.97383 0.96827 1.21084 0.93187 1.47673 0.94105 0.92565 1.25001 0.96175 0.95181 0.97917 1.69980 0.99485 1.48458 1.35160 0.86554 0.77608 0.78442 0.85146 1.20680 1.21165 1.19823 1.20752 0.78421 0.85067 0.89173 1.90759 1.47649 1.24449 1.78753 1.22855 1.03844 0.83789 0.92485 1.88026 1.71825 1.15783 1.50613 0.88640 0.88654 0.87461 0.90866 0.91578 0.92031 0.91709 0.90927 0.92023 0.94647 0.90627 0.90261 0.92437 0.89915 0.90009 0.91495 0.88389 0.89898 0.90290 0.90680 0.91862 0.96663 0.95893 0.92957 0.89762 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.11 14.32 29.02 0.42 -0.69 16 2 C -0.15 -0.88 9.52 -36.02 -0.34 -1.22 16 3 C -0.09 -0.53 5.66 -27.88 -0.16 -0.68 16 4 C -0.11 -0.64 5.20 -26.74 -0.14 -0.78 16 5 C -0.11 -0.74 5.25 -26.74 -0.14 -0.88 16 6 C 0.05 0.36 4.53 -3.82 -0.02 0.34 16 7 N -0.52 -4.86 5.16 -231.52 -1.20 -6.06 16 8 C 0.05 0.43 6.22 -2.73 -0.02 0.42 16 9 C -0.17 -1.70 5.76 -25.28 -0.15 -1.85 16 10 C 0.09 1.11 0.83 -89.87 -0.07 1.04 16 11 C 0.06 0.62 5.87 -2.66 -0.02 0.61 16 12 C 0.10 1.38 5.39 -4.66 -0.03 1.35 16 13 N -0.60 -10.78 2.83 -174.91 -0.49 -11.27 16 14 C 0.11 2.44 5.22 -4.04 -0.02 2.42 16 15 C 0.01 0.38 5.29 -27.88 -0.15 0.23 16 16 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.48 8.90 7.45 -11.61 -0.09 8.81 16 25 O -0.54 -12.33 16.37 5.55 0.09 -12.24 16 26 C 0.05 0.69 6.37 35.80 0.23 0.91 16 27 O -0.34 -4.74 10.44 -35.23 -0.37 -5.11 16 28 H 0.10 0.45 8.06 -52.49 -0.42 0.03 16 29 H 0.10 0.49 7.84 -52.48 -0.41 0.08 16 30 H 0.11 0.55 8.06 -52.49 -0.42 0.13 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.37 7.79 -51.93 -0.40 -0.04 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.41 7.14 -51.93 -0.37 0.04 16 37 H 0.04 0.26 7.96 -51.93 -0.41 -0.16 16 38 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.44 6.91 -51.93 -0.36 0.08 16 41 H 0.08 0.86 5.94 -51.93 -0.31 0.55 16 42 H 0.08 0.76 7.80 -51.93 -0.40 0.36 16 43 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 44 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.08 0.99 7.71 -51.93 -0.40 0.59 16 46 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 47 H 0.07 1.71 7.30 -51.93 -0.38 1.34 16 48 H 0.06 1.21 7.95 -51.93 -0.41 0.80 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 52 H 0.08 0.97 6.59 -51.93 -0.34 0.62 16 53 H 0.13 1.66 8.14 -51.93 -0.42 1.23 16 LS Contribution 416.64 15.07 6.28 6.28 Total: -1.00 -33.96 416.64 -10.71 -44.67 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -9.64 Total: -2.93 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.10 Total: -3.65 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -0.95 Total: -43.90 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.28 Total: -17.35 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.96 -10.71 -44.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273494752.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.450 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds