Wall clock time and date at job start Tue Mar 31 2020 20:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 C 1.52997 * 109.47212 * 124.99896 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 3 7 7 N 1.46907 * 109.47483 * 180.02562 * 6 5 4 8 8 C 1.47504 * 110.99941 * 69.87321 * 7 6 5 9 9 C 1.54458 * 107.25952 * 123.21931 * 8 7 6 10 10 C 1.54311 * 102.94803 * 21.54431 * 9 8 7 11 11 C 1.47993 * 111.00125 * 190.76816 * 7 6 5 12 12 C 1.52026 * 110.64710 * 207.01227 * 10 9 8 13 13 N 1.46272 * 109.96967 * 283.57481 * 12 10 9 14 14 C 1.46508 * 118.81305 * 162.92825 * 13 12 10 15 15 C 1.52996 * 109.47122 * 89.99951 * 14 13 12 16 16 C 1.50706 * 109.46805 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00149 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99827 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99868 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99612 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47066 * 90.00269 * 20 18 16 22 22 H 1.48507 * 109.47161 * 210.00052 * 20 18 16 23 23 H 1.48498 * 109.47657 * 330.00400 * 20 18 16 24 24 C 1.33842 * 122.37274 * 342.89939 * 13 12 10 25 25 O 1.21285 * 118.61868 * 182.71608 * 24 13 12 26 26 C 1.50274 * 122.75783 * 2.73912 * 24 13 12 27 27 O 1.42106 * 110.68748 * 83.57185 * 10 9 8 28 28 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 32 32 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 33 33 H 1.09002 * 109.47153 * 299.99998 * 4 3 2 34 34 H 1.08998 * 109.47533 * 59.99628 * 4 3 2 35 35 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 36 36 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 37 37 H 1.09002 * 109.47153 * 300.00216 * 6 5 4 38 38 H 1.09001 * 109.47289 * 60.00300 * 6 5 4 39 39 H 1.09000 * 109.88430 * 242.63274 * 8 7 6 40 40 H 1.09004 * 109.88303 * 3.80219 * 8 7 6 41 41 H 1.09002 * 110.71748 * 139.90996 * 9 8 7 42 42 H 1.08997 * 110.72203 * 263.17839 * 9 8 7 43 43 H 1.08997 * 110.38591 * 333.27249 * 11 7 6 44 44 H 1.09002 * 110.38958 * 95.64485 * 11 7 6 45 45 H 1.08999 * 109.38979 * 43.72772 * 12 10 9 46 46 H 1.09005 * 109.38710 * 163.52058 * 12 10 9 47 47 H 1.08996 * 109.46356 * 209.99870 * 14 13 12 48 48 H 1.08998 * 109.46565 * 329.99643 * 14 13 12 49 49 H 1.09003 * 109.47099 * 299.99856 * 15 14 13 50 50 H 1.08994 * 109.47328 * 59.99992 * 15 14 13 51 51 H 0.97002 * 119.99196 * 179.97438 * 19 18 16 52 52 H 1.08998 * 109.38799 * 103.40815 * 26 24 13 53 53 H 1.08993 * 109.39247 * 223.21765 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6578 1.1813 6 6 4.7714 2.6861 2.3633 7 7 5.5060 3.9584 2.3633 8 6 4.6175 5.0817 2.7162 9 6 5.2349 5.7860 3.9445 10 6 6.7162 5.3586 3.8797 11 6 6.6281 3.9229 3.3276 12 6 7.3376 5.3666 5.2672 13 7 7.6211 6.7410 5.6797 14 6 7.8619 7.0170 7.0982 15 6 9.3560 6.8805 7.3979 16 6 9.6037 7.1651 8.8569 17 1 8.7780 7.4176 9.5056 18 6 10.8844 7.1020 9.3639 19 7 11.8898 6.7939 8.5740 20 14 11.1915 7.4554 11.1722 21 1 11.0888 6.1931 11.9477 22 1 12.5503 8.0306 11.3404 23 1 10.1796 8.4235 11.6662 24 6 7.6690 7.7554 4.8079 25 8 7.9591 8.8597 5.2169 26 6 7.3781 7.5836 3.3436 27 8 7.4426 6.1979 2.9924 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 2.6213 1.4026 -0.9314 32 1 1.3585 2.1317 0.0896 33 1 2.4772 1.2357 2.1130 34 1 3.7399 0.5067 1.0922 35 1 4.3582 2.7549 0.2499 36 1 3.0957 3.4846 1.2707 37 1 4.2132 2.5893 3.2945 38 1 5.4762 1.8594 2.2744 39 1 4.5535 5.7801 1.8817 40 1 3.6250 4.7055 2.9645 41 1 5.1416 6.8684 3.8557 42 1 4.7714 5.4322 4.8653 43 1 6.4151 3.2193 4.1323 44 1 7.5552 3.6532 2.8217 45 1 6.6459 4.9114 5.9761 46 1 8.2664 4.7962 5.2510 47 1 7.5357 8.0305 7.3315 48 1 7.3028 6.3062 7.7066 49 1 9.6822 5.8669 7.1645 50 1 9.9151 7.5912 6.7894 51 1 12.7908 6.7499 8.9306 52 1 6.3810 7.9661 3.1255 53 1 8.1138 8.1378 2.7610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273494752.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:19 Heat of formation + Delta-G solvation = -83.067437 kcal Electronic energy + Delta-G solvation = -29437.857428 eV Core-core repulsion = 25501.749147 eV Total energy + Delta-G solvation = -3936.108281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.23088 -40.19013 -38.24174 -37.03861 -36.91542 -35.16388 -34.26475 -32.41986 -31.57167 -30.89850 -28.76532 -28.70186 -26.65210 -26.19870 -24.37603 -23.61635 -22.42128 -21.89230 -21.40979 -20.52779 -19.52711 -18.83184 -18.71154 -17.66739 -17.27446 -16.91178 -16.62115 -16.52939 -16.34709 -15.84694 -15.80139 -15.13346 -15.07781 -14.87013 -14.64360 -14.44586 -14.31935 -14.21779 -14.10427 -13.96566 -13.44610 -13.31596 -13.19419 -13.11315 -12.86548 -12.65881 -12.59756 -12.41597 -12.21621 -12.11034 -11.95210 -11.92347 -11.81278 -11.77633 -11.50842 -11.49440 -11.33536 -11.20918 -10.60851 -10.40327 -10.15391 -9.71728 -9.23737 -8.24480 -6.37585 1.37581 1.40714 1.43829 1.44668 1.51869 1.83644 2.38894 2.51173 2.85846 3.08954 3.26768 3.47161 3.56999 3.66898 3.93886 4.07019 4.11709 4.13306 4.18510 4.22689 4.27801 4.31535 4.36207 4.44920 4.51832 4.55948 4.59303 4.61947 4.65636 4.68024 4.78381 4.80716 4.88076 4.89233 4.93212 4.96922 4.99882 5.11067 5.13629 5.19155 5.22687 5.41181 5.42595 5.52032 5.53584 5.76655 5.80700 5.86423 5.94085 5.98635 6.13641 6.18191 6.40101 6.77562 7.03033 7.32196 8.87741 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.001924 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.647573 B =14552.033085 C =15297.985417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.094 4.094 4 C -0.108 4.108 5 C -0.107 4.107 6 C 0.049 3.951 7 N -0.534 5.534 8 C 0.054 3.946 9 C -0.166 4.166 10 C 0.092 3.908 11 C 0.067 3.933 12 C 0.094 3.906 13 N -0.597 5.597 14 C 0.129 3.871 15 C 0.025 3.975 16 C -0.545 4.545 17 H 0.067 0.933 18 C 0.000 4.000 19 N -0.933 5.933 20 Si 0.972 3.028 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.264 1.264 24 C 0.471 3.529 25 O -0.592 6.592 26 C 0.062 3.938 27 O -0.354 6.354 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.110 0.890 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.092 0.908 49 H -0.003 1.003 50 H -0.027 1.027 51 H 0.264 0.736 52 H 0.116 0.884 53 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.896 -13.716 -17.294 31.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.179 4.179 3 C -0.131 4.131 4 C -0.146 4.146 5 C -0.145 4.145 6 C -0.079 4.079 7 N -0.258 5.258 8 C -0.073 4.073 9 C -0.204 4.204 10 C 0.051 3.949 11 C -0.061 4.061 12 C -0.029 4.029 13 N -0.329 5.329 14 C 0.007 3.993 15 C -0.012 4.012 16 C -0.583 4.583 17 H 0.085 0.915 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.796 3.204 21 H -0.190 1.190 22 H -0.210 1.210 23 H -0.188 1.188 24 C 0.259 3.741 25 O -0.473 6.473 26 C -0.017 4.017 27 O -0.272 6.272 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.128 0.872 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.110 0.890 49 H 0.016 0.984 50 H -0.009 1.009 51 H 0.073 0.927 52 H 0.133 0.867 53 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.300 -13.213 -17.774 31.429 hybrid contribution 0.497 0.365 1.898 1.996 sum -21.803 -12.848 -15.876 29.874 Atomic orbital electron populations 1.24006 0.96166 1.02300 1.01587 1.23121 0.96249 0.98972 0.99563 1.20764 0.98178 0.95127 0.99055 1.21439 0.97661 0.97395 0.98123 1.21504 0.97239 0.97522 0.98276 1.22384 0.96311 0.91130 0.98059 1.63624 1.09412 1.04163 1.48629 1.22799 0.95542 0.93050 0.95945 1.23372 0.93989 1.02340 1.00727 1.22282 0.91513 0.93327 0.87732 1.22822 0.96387 0.91774 0.95072 1.22114 1.01868 0.82234 0.96679 1.47746 1.68250 1.08471 1.08386 1.21523 0.97308 1.01084 0.79371 1.19158 0.91935 0.94608 0.95549 1.21546 0.93913 1.47738 0.95131 0.91521 1.26039 0.95837 0.94626 1.03321 1.70130 1.00056 1.49397 1.37663 0.85348 0.77493 0.78924 0.78662 1.19020 1.20967 1.18783 1.21706 0.77052 0.84235 0.91071 1.90726 1.50065 1.26566 1.79972 1.22828 1.05734 0.84435 0.88735 1.88030 1.72585 1.15692 1.50897 0.87984 0.88447 0.87023 0.90842 0.91623 0.92029 0.91507 0.91727 0.92023 0.93943 0.90393 0.90520 0.90867 0.90322 0.88873 0.89700 0.89271 0.87222 0.91542 0.92435 0.88994 0.98442 1.00907 0.92731 0.86658 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.01 14.32 67.78 0.97 -1.04 16 2 C -0.16 -1.63 9.52 25.65 0.24 -1.39 16 3 C -0.09 -0.90 5.66 29.85 0.17 -0.73 16 4 C -0.11 -1.01 5.20 30.59 0.16 -0.85 16 5 C -0.11 -1.16 5.25 30.59 0.16 -1.00 16 6 C 0.05 0.60 4.53 86.30 0.39 0.99 16 7 N -0.53 -8.67 5.16 -886.41 -4.58 -13.25 16 8 C 0.05 0.80 6.22 86.68 0.54 1.34 16 9 C -0.17 -2.87 5.76 31.53 0.18 -2.69 16 10 C 0.09 2.01 0.83 -10.31 -0.01 2.00 16 11 C 0.07 1.20 5.87 86.45 0.51 1.70 16 12 C 0.09 2.51 5.39 86.10 0.46 2.98 16 13 N -0.60 -21.71 2.83 -826.19 -2.33 -24.04 16 14 C 0.13 5.60 5.22 86.38 0.45 6.05 16 15 C 0.03 1.42 5.29 29.85 0.16 1.58 16 16 C -0.54 -31.83 9.11 25.60 0.23 -31.59 16 17 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 18 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 19 N -0.93 -58.50 13.29 21.45 0.28 -58.22 16 20 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 24 C 0.47 17.74 7.45 87.67 0.65 18.40 16 25 O -0.59 -28.21 16.37 -3.04 -0.05 -28.26 16 26 C 0.06 1.66 6.37 71.10 0.45 2.11 16 27 O -0.35 -9.33 10.44 -148.98 -1.55 -10.89 16 28 H 0.10 0.83 8.06 -2.91 -0.02 0.81 16 29 H 0.10 0.89 7.84 -2.91 -0.02 0.87 16 30 H 0.11 1.00 8.06 -2.91 -0.02 0.97 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.63 7.79 -2.39 -0.02 0.61 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.68 7.14 -2.39 -0.02 0.66 16 37 H 0.04 0.48 7.96 -2.39 -0.02 0.46 16 38 H 0.08 0.93 8.07 -2.39 -0.02 0.91 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 0.87 6.91 -2.38 -0.02 0.86 16 41 H 0.08 1.44 5.94 -2.39 -0.01 1.43 16 42 H 0.09 1.42 7.80 -2.39 -0.02 1.40 16 43 H 0.08 1.20 7.67 -2.39 -0.02 1.18 16 44 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 45 H 0.11 2.34 7.71 -2.39 -0.02 2.32 16 46 H 0.07 1.95 8.13 -2.38 -0.02 1.93 16 47 H 0.06 2.69 7.30 -2.39 -0.02 2.68 16 48 H 0.09 3.43 7.95 -2.39 -0.02 3.41 16 49 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 50 H -0.03 -1.79 8.14 -2.39 -0.02 -1.81 16 51 H 0.26 15.50 8.31 -92.71 -0.77 14.72 16 52 H 0.12 2.43 6.59 -2.39 -0.02 2.41 16 53 H 0.14 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -76.02 416.64 0.84 -75.18 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.85 Total: 14.14 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 6.19 Total: -1.69 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -6.62 Total: -95.50 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -1.60 Total: -39.14 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -76.02 0.84 -75.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273494752.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.887 kcal (2) G-P(sol) polarization free energy of solvation -76.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds