Wall clock time and date at job start Tue Mar 31 2020 19:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47181 * 2 1 4 4 C 1.52998 * 109.47217 * 120.00210 * 2 1 3 5 5 C 1.53005 * 109.47020 * 69.88402 * 4 2 1 6 6 C 1.50696 * 112.84793 * 292.67578 * 5 4 2 7 7 O 1.21287 * 120.00227 * 112.43225 * 6 5 4 8 8 N 1.34777 * 120.00279 * 292.42888 * 6 5 4 9 9 C 1.47143 * 121.05931 * 357.00231 * 8 6 5 10 10 C 1.53222 * 108.72820 * 127.72531 * 9 8 6 11 11 O 1.43110 * 109.35455 * 54.19659 * 10 9 8 12 12 C 1.42360 * 113.99222 * 300.22174 * 11 10 9 13 13 C 1.52919 * 114.29664 * 285.04790 * 12 11 10 14 14 N 1.47163 * 87.84813 * 271.72411 * 13 12 11 15 15 C 1.36933 * 135.99949 * 153.32662 * 14 13 12 16 16 H 1.08003 * 120.00202 * 4.55992 * 15 14 13 17 17 C 1.38815 * 120.00059 * 184.56069 * 15 14 13 18 18 N 1.31620 * 119.99920 * 5.56509 * 17 15 14 19 19 Si 1.86798 * 120.00165 * 185.56531 * 17 15 14 20 20 H 1.48502 * 109.46714 * 265.01466 * 19 17 15 21 21 H 1.48498 * 109.47060 * 25.01314 * 19 17 15 22 22 H 1.48502 * 109.47036 * 145.01327 * 19 17 15 23 23 C 1.47178 * 87.99664 * 333.57911 * 14 13 12 24 24 C 1.47359 * 121.06643 * 177.02261 * 8 6 5 25 25 C 1.53777 * 113.69186 * 63.94360 * 5 4 2 26 26 C 1.53777 * 87.08204 * 89.12254 * 25 5 4 27 27 C 1.53774 * 113.61297 * 161.48093 * 5 4 2 28 28 H 1.09006 * 109.47091 * 44.21986 * 1 2 3 29 29 H 1.09001 * 109.47396 * 164.22242 * 1 2 3 30 30 H 1.09002 * 109.46919 * 284.22402 * 1 2 3 31 31 H 1.09002 * 109.46528 * 240.00117 * 2 1 3 32 32 H 1.09002 * 109.47115 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47512 * 300.00510 * 3 2 1 34 34 H 1.09001 * 109.46956 * 59.99890 * 3 2 1 35 35 H 1.09000 * 109.47249 * 309.88621 * 4 2 1 36 36 H 1.08994 * 109.47093 * 189.88547 * 4 2 1 37 37 H 1.09002 * 109.59265 * 247.49940 * 9 8 6 38 38 H 1.09001 * 109.59227 * 7.79929 * 9 8 6 39 39 H 1.08999 * 109.48615 * 174.15898 * 10 9 8 40 40 H 1.09000 * 109.49016 * 294.23344 * 10 9 8 41 41 H 1.08999 * 113.48973 * 156.97413 * 13 12 11 42 42 H 1.08999 * 113.54612 * 26.47513 * 13 12 11 43 43 H 0.96995 * 120.00295 * 180.02562 * 18 17 15 44 44 H 1.09000 * 113.48761 * 141.17384 * 23 14 13 45 45 H 1.09004 * 113.49019 * 271.67892 * 23 14 13 46 46 H 1.09000 * 109.74411 * 108.59103 * 24 8 6 47 47 H 1.09003 * 109.74328 * 347.86410 * 24 8 6 48 48 H 1.08992 * 113.61633 * 203.67837 * 25 5 4 49 49 H 1.09000 * 113.61290 * 334.57829 * 25 5 4 50 50 H 1.08991 * 113.62156 * 270.88512 * 26 25 5 51 51 H 1.09005 * 113.68822 * 139.98716 * 26 25 5 52 52 H 1.09000 * 113.61933 * 25.34253 * 27 5 4 53 53 H 1.09006 * 113.61434 * 156.25525 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.7423 -2.2175 1.1315 6 6 0.2679 -2.5259 1.1760 7 8 -0.2919 -2.9555 0.1895 8 7 -0.4287 -2.3246 2.3120 9 6 0.2387 -1.8667 3.5408 10 6 -0.5008 -0.6345 4.0725 11 8 -1.8889 -0.9453 4.2289 12 6 -2.5330 -1.3409 3.0225 13 6 -2.8223 -0.1907 2.0573 14 7 -4.1045 -0.0016 2.7543 15 6 -4.9645 1.0421 2.9687 16 1 -4.7772 2.0000 2.5063 17 6 -6.0772 0.8691 3.7805 18 7 -6.2476 -0.2622 4.4312 19 14 -7.3328 2.2419 3.9493 20 1 -7.0205 3.0528 5.1536 21 1 -7.2850 3.1074 2.7436 22 1 -8.6908 1.6566 4.0851 23 6 -4.0537 -1.4250 3.1253 24 6 -1.8831 -2.5564 2.3634 25 6 2.4807 -2.9050 -0.0290 26 6 3.6329 -3.1577 0.9576 27 6 2.5829 -3.0892 2.0792 28 1 -0.3633 0.7365 -0.7167 29 1 -0.3634 -0.9889 -0.2794 30 1 -0.3633 0.2525 0.9962 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.5399 -0.3195 2.1304 36 1 3.1156 -0.5710 1.3418 37 1 0.2124 -2.6596 4.2883 38 1 1.2740 -1.6073 3.3195 39 1 -0.0816 -0.3468 5.0366 40 1 -0.3897 0.1888 3.3668 41 1 -2.9339 -0.5106 1.0213 42 1 -2.1397 0.6520 2.1671 43 1 -7.0252 -0.3833 4.9981 44 1 -4.4091 -1.6234 4.1364 45 1 -4.5036 -2.0839 2.3825 46 1 -2.0930 -3.4502 2.9509 47 1 -2.2723 -2.6794 1.3527 48 1 1.9952 -3.8169 -0.3762 49 1 2.7428 -2.2279 -0.8420 50 1 4.3629 -2.3492 0.9929 51 1 4.0938 -4.1397 0.8504 52 1 2.9276 -2.5609 2.9681 53 1 2.1253 -4.0517 2.3083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273624606.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:57 Heat of formation + Delta-G solvation = -12.299066 kcal Electronic energy + Delta-G solvation = -32543.299467 eV Core-core repulsion = 28610.259932 eV Total energy + Delta-G solvation = -3933.039535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.40186 -41.03686 -38.75975 -37.86677 -36.38500 -35.73815 -34.32319 -31.72131 -29.78410 -29.33243 -28.13458 -27.82476 -26.69728 -26.59215 -25.38341 -24.58784 -23.57529 -21.41265 -21.09108 -20.25388 -19.38048 -18.83175 -18.00805 -17.58263 -17.21390 -17.02572 -16.63063 -16.18945 -15.99988 -15.77282 -15.39000 -15.30793 -15.15186 -15.06864 -14.70977 -14.42240 -14.12611 -13.85877 -13.62468 -13.45241 -13.25320 -13.22742 -13.02830 -12.91122 -12.82825 -12.73275 -12.57050 -12.48542 -12.17794 -12.04926 -11.95525 -11.84548 -11.73668 -11.68719 -11.54000 -11.39879 -11.14147 -11.00207 -10.91102 -10.72537 -10.40497 -9.52871 -8.95529 -7.91853 -5.27884 1.43238 1.45949 1.55012 1.62924 1.89922 2.43813 2.67190 3.26409 3.32696 3.37724 3.40684 3.51245 3.71372 3.78861 3.85424 3.91361 4.02910 4.03680 4.11780 4.17174 4.25493 4.30540 4.40605 4.52256 4.60904 4.62433 4.66490 4.69534 4.74905 4.76457 4.77043 4.83716 4.85778 4.89490 4.94012 4.99775 5.04145 5.09085 5.09961 5.13966 5.17192 5.20806 5.27857 5.31726 5.36282 5.42821 5.45731 5.53186 5.57672 5.88051 6.37249 6.43172 6.85411 7.18475 7.55262 8.53827 9.24150 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018918 B = 0.003487 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.678460 B = 8027.623911 C = 8581.530267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.089 4.089 5 C -0.105 4.105 6 C 0.536 3.464 7 O -0.582 6.582 8 N -0.607 5.607 9 C 0.072 3.928 10 C 0.036 3.964 11 O -0.362 6.362 12 C 0.083 3.917 13 C 0.113 3.887 14 N -0.629 5.629 15 C -0.234 4.234 16 H 0.081 0.919 17 C -0.062 4.062 18 N -0.947 5.947 19 Si 0.982 3.018 20 H -0.283 1.283 21 H -0.269 1.269 22 H -0.291 1.291 23 C 0.159 3.841 24 C 0.112 3.888 25 C -0.120 4.120 26 C -0.124 4.124 27 C -0.124 4.124 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.047 0.953 41 H 0.039 0.961 42 H 0.042 0.958 43 H 0.250 0.750 44 H 0.055 0.945 45 H 0.037 0.963 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.105 0.895 51 H 0.077 0.923 52 H 0.103 0.897 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.107 -3.987 -3.936 26.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.110 4.110 3 C -0.200 4.200 4 C -0.126 4.126 5 C -0.108 4.108 6 C 0.327 3.673 7 O -0.463 6.463 8 N -0.339 5.339 9 C -0.050 4.050 10 C -0.041 4.041 11 O -0.280 6.280 12 C 0.040 3.960 13 C -0.013 4.013 14 N -0.355 5.355 15 C -0.362 4.362 16 H 0.099 0.901 17 C -0.256 4.256 18 N -0.595 5.595 19 Si 0.809 3.191 20 H -0.210 1.210 21 H -0.194 1.194 22 H -0.217 1.217 23 C 0.032 3.968 24 C -0.012 4.012 25 C -0.157 4.157 26 C -0.161 4.161 27 C -0.161 4.161 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.109 0.891 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.123 0.877 51 H 0.096 0.904 52 H 0.121 0.879 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 25.433 -4.007 -4.145 26.079 hybrid contribution -1.741 0.529 -0.291 1.843 sum 23.692 -3.478 -4.436 24.354 Atomic orbital electron populations 1.22225 0.97340 1.01831 1.00913 1.21091 0.93998 0.97074 0.98812 1.21821 1.01788 0.94780 1.01592 1.21656 1.03518 0.89305 0.98119 1.22280 0.88385 0.98262 1.01826 1.21026 0.89898 0.75299 0.81060 1.90644 1.72176 1.47686 1.35779 1.48238 1.07288 1.66626 1.11778 1.22800 0.98627 0.97456 0.86114 1.23259 0.81038 0.96298 1.03476 1.87987 1.23459 1.87322 1.29259 1.22661 0.93780 0.93288 0.86230 1.22895 0.87476 0.96166 0.94759 1.45622 1.22881 1.06052 1.60928 1.19242 1.02562 0.90239 1.24166 0.90141 1.25653 1.00824 1.00074 0.99003 1.70019 1.29851 1.26481 1.33120 0.85025 0.77929 0.78061 0.78050 1.21006 1.19428 1.21714 1.21998 0.89265 0.85933 0.99575 1.21804 0.80880 0.96889 1.01664 1.22861 0.96548 0.99983 0.96351 1.22813 0.95729 1.03473 0.94118 1.23097 0.95994 0.99122 0.97894 0.93756 0.92979 0.93840 0.90972 0.90610 0.93275 0.92991 0.90805 0.87319 0.89123 0.85139 0.85202 0.93465 0.94376 0.93979 0.94113 0.92696 0.94508 0.89998 0.89782 0.91590 0.90495 0.87654 0.90393 0.87893 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.48 8.11 71.98 0.58 -3.90 16 2 C -0.09 -1.71 2.84 -10.79 -0.03 -1.74 16 3 C -0.14 -2.22 9.12 71.98 0.66 -1.57 16 4 C -0.09 -1.28 3.76 30.60 0.12 -1.17 16 5 C -0.10 -1.82 0.28 -52.40 -0.01 -1.83 16 6 C 0.54 14.32 4.29 87.66 0.38 14.70 16 7 O -0.58 -20.50 13.98 -3.05 -0.04 -20.54 16 8 N -0.61 -16.10 3.03 -817.96 -2.48 -18.58 16 9 C 0.07 1.42 5.30 86.33 0.46 1.87 16 10 C 0.04 0.92 6.82 72.06 0.49 1.41 16 11 O -0.36 -14.07 10.53 -148.98 -1.57 -15.63 16 12 C 0.08 3.31 1.27 -11.01 -0.01 3.30 16 13 C 0.11 5.01 7.35 83.31 0.61 5.62 16 14 N -0.63 -34.58 3.78 -740.02 -2.80 -37.37 16 15 C -0.23 -13.88 10.74 84.03 0.90 -12.98 16 16 H 0.08 4.59 7.83 -2.91 -0.02 4.56 16 17 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 18 N -0.95 -58.89 11.43 21.65 0.25 -58.64 16 19 Si 0.98 47.08 29.56 68.60 2.03 49.11 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 23 C 0.16 8.02 6.98 83.22 0.58 8.60 16 24 C 0.11 3.74 5.83 86.14 0.50 4.24 16 25 C -0.12 -2.01 6.67 31.12 0.21 -1.80 16 26 C -0.12 -1.23 7.73 31.12 0.24 -0.99 16 27 C -0.12 -1.44 5.80 31.12 0.18 -1.26 16 28 H 0.04 1.21 8.04 -2.38 -0.02 1.19 16 29 H 0.05 1.68 4.81 -2.39 -0.01 1.67 16 30 H 0.04 1.26 6.48 -2.39 -0.02 1.24 16 31 H 0.07 1.37 6.41 -2.39 -0.02 1.36 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 1.10 5.56 -2.39 -0.01 1.09 16 36 H 0.11 0.92 7.30 -2.39 -0.02 0.90 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 38 H 0.13 1.69 3.32 -2.39 -0.01 1.68 16 39 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.05 1.27 7.01 -2.39 -0.02 1.25 16 41 H 0.04 1.71 7.93 -2.39 -0.02 1.69 16 42 H 0.04 1.83 6.66 -2.39 -0.02 1.81 16 43 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.05 3.15 6.88 -2.39 -0.02 3.13 16 45 H 0.04 1.85 8.09 -2.39 -0.02 1.83 16 46 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 47 H 0.08 3.09 6.92 -2.39 -0.02 3.08 16 48 H 0.07 1.42 7.75 -2.39 -0.02 1.40 16 49 H 0.08 1.23 6.58 -2.39 -0.02 1.21 16 50 H 0.11 0.63 7.62 -2.39 -0.02 0.61 16 51 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 52 H 0.10 0.69 7.22 -2.39 -0.02 0.68 16 53 H 0.08 1.07 8.09 -2.38 -0.02 1.05 16 Total: -1.00 -76.80 387.81 2.60 -74.20 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.90 Total: 18.15 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 6.31 Total: 9.31 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -5.03 Total: -114.59 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -1.61 Total: -36.17 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -76.80 2.60 -74.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273624606.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.905 kcal (2) G-P(sol) polarization free energy of solvation -76.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds