Wall clock time and date at job start Tue Mar 31 2020 20:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46975 * 2 1 4 4 C 1.32988 * 119.99877 * 125.26569 * 3 2 1 5 5 C 1.50707 * 119.99997 * 175.69777 * 4 3 2 6 6 C 1.47100 * 120.00242 * 355.70484 * 4 3 2 7 7 O 1.21621 * 119.99568 * 263.32139 * 6 4 3 8 8 N 1.34770 * 120.00839 * 83.32020 * 6 4 3 9 9 C 1.46929 * 120.57706 * 174.84018 * 8 6 4 10 10 C 1.53302 * 108.71061 * 125.86649 * 9 8 6 11 11 C 1.52424 * 109.38595 * 53.70864 * 10 9 8 12 12 C 1.53971 * 110.25032 * 62.55551 * 11 10 9 13 13 O 1.44552 * 104.69163 * 94.88878 * 12 11 10 14 14 C 1.44467 * 105.35992 * 40.02080 * 13 12 11 15 15 H 1.09008 * 110.36988 * 78.77912 * 14 13 12 16 16 C 1.52995 * 110.36727 * 200.98910 * 14 13 12 17 17 N 1.46507 * 109.47327 * 298.54838 * 16 14 13 18 18 C 1.36935 * 119.99783 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00717 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99576 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00391 * 359.72548 * 20 18 17 22 22 Si 1.86803 * 119.99989 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47273 * 60.00004 * 22 20 18 24 24 H 1.48497 * 109.47258 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47184 * 299.99984 * 22 20 18 26 26 C 1.53985 * 110.26886 * 177.53776 * 11 10 9 27 27 C 1.52406 * 111.00537 * 300.07326 * 11 10 9 28 28 C 1.46935 * 120.56380 * 354.86608 * 8 6 4 29 29 H 1.08998 * 109.47028 * 299.99761 * 1 2 3 30 30 H 1.09003 * 109.47166 * 60.00202 * 1 2 3 31 31 H 1.09004 * 109.46806 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46895 * 239.99701 * 2 1 3 33 33 H 1.09003 * 109.47166 * 119.99798 * 2 1 3 34 34 H 1.07997 * 119.99699 * 305.26493 * 3 2 1 35 35 H 1.09001 * 109.46973 * 275.04584 * 5 4 3 36 36 H 1.08995 * 109.46557 * 35.04089 * 5 4 3 37 37 H 1.08993 * 109.47015 * 155.04394 * 5 4 3 38 38 H 1.08997 * 109.59550 * 6.10757 * 9 8 6 39 39 H 1.08996 * 109.72974 * 245.71434 * 9 8 6 40 40 H 1.08993 * 109.48986 * 293.73234 * 10 9 8 41 41 H 1.09000 * 109.48283 * 173.67784 * 10 9 8 42 42 H 1.09000 * 110.39499 * 336.08793 * 12 11 10 43 43 H 1.08997 * 110.48963 * 213.74099 * 12 11 10 44 44 H 1.08998 * 109.47372 * 178.54804 * 16 14 13 45 45 H 1.09000 * 109.47289 * 58.54832 * 16 14 13 46 46 H 0.96999 * 119.99600 * 0.02562 * 17 16 14 47 47 H 0.96997 * 120.00269 * 179.97438 * 21 20 18 48 48 H 1.09000 * 110.54477 * 122.76650 * 26 11 10 49 49 H 1.08997 * 110.54695 * 359.96343 * 26 11 10 50 50 H 1.08993 * 109.48575 * 179.88978 * 27 11 10 51 51 H 1.09003 * 109.48053 * 299.93896 * 27 11 10 52 52 H 1.08997 * 109.59820 * 353.89070 * 28 8 6 53 53 H 1.09001 * 109.59000 * 114.19659 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8809 1.8261 0.9404 5 6 3.4585 3.2170 0.8854 6 6 3.2558 0.9168 2.0341 7 8 2.6813 0.9831 3.1040 8 7 4.2359 0.0101 1.8508 9 6 4.6979 -0.8270 2.9665 10 6 4.6091 -2.2988 2.5466 11 6 5.3633 -2.4978 1.2371 12 6 6.8561 -2.1722 1.4272 13 8 7.4776 -3.4482 1.7012 14 6 6.8311 -4.3872 0.8138 15 1 7.2399 -4.3010 -0.1930 16 6 7.0000 -5.8156 1.3354 17 7 8.4250 -6.1524 1.3843 18 6 8.8219 -7.3876 1.8224 19 1 8.0845 -8.1136 2.1315 20 6 10.1721 -7.7064 1.8693 21 7 11.0705 -6.8236 1.4875 22 14 10.7136 -9.3916 2.4663 23 1 10.1279 -10.4386 1.5911 24 1 12.1952 -9.4802 2.4213 25 1 10.2482 -9.5956 3.8617 26 6 5.3392 -3.9821 0.8279 27 6 4.7717 -1.6344 0.1293 28 6 4.8613 -0.1579 0.5318 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.7031 2.1099 -0.7637 35 1 4.3357 3.2207 0.2384 36 1 2.7118 3.9050 0.4890 37 1 3.7458 3.5310 1.8888 38 1 4.0655 -0.6567 3.8377 39 1 5.7307 -0.5781 3.2101 40 1 3.5637 -2.5754 2.4098 41 1 5.0528 -2.9250 3.3206 42 1 6.9928 -1.4945 2.2698 43 1 7.2701 -1.7355 0.5184 44 1 6.4855 -6.5086 0.6697 45 1 6.5746 -5.8897 2.3362 46 1 9.0872 -5.5001 1.1070 47 1 12.0139 -7.0463 1.5206 48 1 4.9019 -4.0984 -0.1637 49 1 4.7895 -4.5722 1.5611 50 1 5.3296 -1.7941 -0.7933 51 1 3.7275 -1.9063 -0.0252 52 1 4.3365 0.4536 -0.2021 53 1 5.9066 0.1471 0.5815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276912641.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:20 Heat of formation + Delta-G solvation = -86.123754 kcal Electronic energy + Delta-G solvation = -30462.892034 eV Core-core repulsion = 26526.651221 eV Total energy + Delta-G solvation = -3936.240813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.98473 -40.65129 -37.96942 -36.85822 -36.33876 -34.35519 -33.50582 -33.14731 -32.19864 -31.08747 -28.42898 -27.86855 -26.74183 -25.63198 -24.67713 -24.13924 -23.39138 -22.54620 -21.93209 -20.21773 -19.19569 -19.01580 -17.78415 -17.19449 -16.99535 -16.61839 -16.49321 -16.46542 -16.32501 -15.52542 -15.36869 -15.23329 -14.96137 -14.84559 -14.59282 -14.25843 -14.07279 -13.93260 -13.84230 -13.73417 -13.66955 -13.39183 -13.27675 -13.07630 -12.92328 -12.84985 -12.72906 -12.43529 -12.26988 -12.22060 -12.09252 -12.01652 -11.93387 -11.86694 -11.53517 -11.37040 -11.29767 -10.96210 -10.85866 -10.57178 -9.86643 -9.68775 -9.00138 -7.93982 -5.23462 0.84217 1.46157 1.50407 1.50755 1.56438 2.01204 2.55844 2.99933 3.38762 3.42371 3.47247 3.63272 3.75032 3.82777 3.93587 4.02184 4.07464 4.14136 4.18030 4.22791 4.37117 4.38686 4.40235 4.49937 4.55207 4.56106 4.57452 4.59646 4.66410 4.72548 4.78301 4.79004 4.83034 4.90225 4.95298 4.98176 4.98795 5.00902 5.07584 5.11097 5.18048 5.19897 5.25128 5.29988 5.30110 5.45444 5.46945 5.52821 5.65327 6.06301 6.27548 6.33961 7.06359 7.33290 8.09791 8.33645 9.29597 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025937 B = 0.002212 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.260269 B =12655.923084 C =12945.703499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.097 4.097 4 C -0.184 4.184 5 C -0.101 4.101 6 C 0.558 3.442 7 O -0.591 6.591 8 N -0.600 5.600 9 C 0.108 3.892 10 C -0.109 4.109 11 C -0.078 4.078 12 C 0.045 3.955 13 O -0.394 6.394 14 C 0.075 3.925 15 H 0.066 0.934 16 C 0.155 3.845 17 N -0.743 5.743 18 C -0.249 4.249 19 H 0.076 0.924 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.977 3.023 23 H -0.274 1.274 24 H -0.294 1.294 25 H -0.279 1.279 26 C -0.127 4.127 27 C -0.114 4.114 28 C 0.103 3.897 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.154 0.846 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.016 0.984 46 H 0.375 0.625 47 H 0.251 0.749 48 H 0.102 0.898 49 H 0.075 0.925 50 H 0.098 0.902 51 H 0.080 0.920 52 H 0.108 0.892 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.190 21.007 -8.714 31.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.115 4.115 4 C -0.187 4.187 5 C -0.158 4.158 6 C 0.348 3.652 7 O -0.473 6.473 8 N -0.331 5.331 9 C -0.014 4.014 10 C -0.147 4.147 11 C -0.079 4.079 12 C -0.032 4.032 13 O -0.313 6.313 14 C 0.017 3.983 15 H 0.083 0.917 16 C 0.029 3.971 17 N -0.385 5.385 18 C -0.381 4.381 19 H 0.094 0.906 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.806 3.194 23 H -0.200 1.200 24 H -0.220 1.220 25 H -0.205 1.205 26 C -0.165 4.165 27 C -0.152 4.152 28 C -0.019 4.019 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.063 0.937 34 H 0.172 0.828 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.034 0.966 46 H 0.206 0.794 47 H 0.060 0.940 48 H 0.121 0.879 49 H 0.094 0.906 50 H 0.117 0.883 51 H 0.099 0.901 52 H 0.127 0.873 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.340 20.810 -7.933 30.845 hybrid contribution 0.853 -0.842 0.710 1.392 sum -20.488 19.969 -7.223 29.507 Atomic orbital electron populations 1.21674 0.94281 1.02219 1.02104 1.20883 0.97126 0.94077 1.02595 1.23620 0.93871 0.97686 0.96344 1.21528 1.03569 0.97819 0.95818 1.20693 1.02037 0.90590 1.02447 1.19088 0.78213 0.79970 0.87891 1.90782 1.54548 1.72402 1.29527 1.48240 1.36413 1.36705 1.11763 1.21642 1.00100 0.89894 0.89777 1.21750 1.00642 0.95425 0.96904 1.21394 0.95161 0.95102 0.96237 1.23731 0.91203 0.86443 1.01797 1.89309 1.61870 1.18997 1.61140 1.23186 0.92965 0.89086 0.93044 0.91653 1.20940 0.85570 0.92956 0.97631 1.42487 1.02565 1.14498 1.78974 1.19634 0.91640 0.91992 1.34816 0.90633 1.25641 0.95981 1.02118 1.03299 1.69838 1.00377 1.36369 1.55476 0.85159 0.76491 0.79462 0.78316 1.19998 1.22019 1.20536 1.22959 0.94634 0.95108 1.03810 1.21916 1.02553 0.93164 0.97555 1.22016 0.99272 0.97374 0.83189 0.94183 0.90642 0.92186 0.88179 0.93725 0.82831 0.89108 0.89318 0.93334 0.90629 0.90583 0.91149 0.91324 0.89215 0.91044 0.94119 0.96608 0.79370 0.93988 0.87915 0.90640 0.88328 0.90091 0.87345 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.89 71.98 0.71 -0.90 16 2 C -0.11 -1.25 6.01 29.85 0.18 -1.08 16 3 C -0.10 -1.00 8.42 24.52 0.21 -0.80 16 4 C -0.18 -2.70 4.14 -18.70 -0.08 -2.77 16 5 C -0.10 -1.06 10.02 71.24 0.71 -0.35 16 6 C 0.56 12.18 5.14 86.57 0.44 12.62 16 7 O -0.59 -18.54 16.52 -4.10 -0.07 -18.61 16 8 N -0.60 -10.80 2.84 -822.74 -2.34 -13.14 16 9 C 0.11 2.23 6.13 86.40 0.53 2.76 16 10 C -0.11 -2.21 4.69 30.50 0.14 -2.07 16 11 C -0.08 -1.48 0.68 -51.91 -0.04 -1.52 16 12 C 0.04 1.07 5.63 72.31 0.41 1.47 16 13 O -0.39 -14.26 11.20 -148.98 -1.67 -15.93 16 14 C 0.07 2.44 3.37 31.14 0.10 2.54 16 15 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 16 C 0.16 6.47 5.89 86.38 0.51 6.97 16 17 N -0.74 -40.13 5.53 -343.45 -1.90 -42.03 16 18 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 21 N -0.97 -61.61 13.06 21.65 0.28 -61.32 16 22 Si 0.98 47.34 29.55 68.60 2.03 49.36 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 26 C -0.13 -2.83 5.90 31.47 0.19 -2.64 16 27 C -0.11 -1.41 4.55 30.50 0.14 -1.27 16 28 C 0.10 1.23 5.89 86.40 0.51 1.74 16 29 H 0.04 0.57 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.04 0.75 6.20 -2.39 -0.01 0.74 16 34 H 0.15 0.76 8.06 -2.91 -0.02 0.73 16 35 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 0.63 8.10 -2.39 -0.02 0.61 16 37 H 0.05 0.68 8.08 -2.39 -0.02 0.66 16 38 H 0.08 1.85 6.99 -2.39 -0.02 1.83 16 39 H 0.08 1.50 6.44 -2.39 -0.02 1.49 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.09 2.05 5.99 -2.39 -0.01 2.04 16 43 H 0.07 1.48 7.71 -2.39 -0.02 1.46 16 44 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.02 0.69 8.13 -2.39 -0.02 0.67 16 46 H 0.37 21.83 7.61 -92.71 -0.71 21.12 16 47 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 48 H 0.10 1.76 7.71 -2.39 -0.02 1.74 16 49 H 0.07 1.75 7.43 -2.39 -0.02 1.74 16 50 H 0.10 0.96 8.12 -2.39 -0.02 0.95 16 51 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.11 0.91 5.71 -2.39 -0.01 0.89 16 53 H 0.08 0.88 7.46 -2.39 -0.02 0.87 16 Total: -1.00 -78.21 409.19 2.49 -75.71 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.18 Total: 29.11 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.98 Total: -3.16 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -3.95 Total: -116.49 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.74 Total: -34.53 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -78.21 2.49 -75.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276912641.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.412 kcal (2) G-P(sol) polarization free energy of solvation -78.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds