Wall clock time and date at job start Tue Mar 31 2020 20:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47421 * 2 1 4 4 C 1.32994 * 120.00340 * 121.72150 * 3 2 1 5 5 C 1.50697 * 120.00315 * 175.95267 * 4 3 2 6 6 C 1.47105 * 120.00038 * 355.94600 * 4 3 2 7 7 O 1.21609 * 120.00137 * 257.71534 * 6 4 3 8 8 N 1.34773 * 119.99859 * 77.98178 * 6 4 3 9 9 C 1.46933 * 120.57218 * 4.65419 * 8 6 4 10 10 C 1.52860 * 108.95096 * 234.12479 * 9 8 6 11 11 C 1.52415 * 109.46027 * 306.52673 * 10 9 8 12 12 C 1.53978 * 110.25387 * 297.29321 * 11 10 9 13 13 O 1.44543 * 104.69612 * 265.09855 * 12 11 10 14 14 C 1.44474 * 105.36486 * 319.97880 * 13 12 11 15 15 H 1.08994 * 110.37204 * 281.34062 * 14 13 12 16 16 C 1.52991 * 110.36997 * 159.11928 * 14 13 12 17 17 N 1.46501 * 109.47485 * 66.45694 * 16 14 13 18 18 C 1.36936 * 120.00467 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99722 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99825 * 179.97438 * 18 17 16 21 21 N 1.31613 * 119.99978 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99649 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47030 * 90.00314 * 22 20 18 24 24 H 1.48499 * 109.47385 * 210.00183 * 22 20 18 25 25 H 1.48500 * 109.47664 * 330.00690 * 22 20 18 26 26 C 1.53984 * 110.27312 * 182.31465 * 11 10 9 27 27 C 1.52402 * 111.00766 * 59.78098 * 11 10 9 28 28 C 1.46922 * 120.57385 * 184.92674 * 8 6 4 29 29 H 1.09000 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46997 * 300.00285 * 1 2 3 31 31 H 1.08998 * 109.46634 * 59.99948 * 1 2 3 32 32 H 1.08997 * 109.47669 * 239.99459 * 2 1 3 33 33 H 1.09009 * 109.47027 * 119.99796 * 2 1 3 34 34 H 1.08000 * 119.99986 * 301.72292 * 3 2 1 35 35 H 1.09009 * 109.47163 * 275.01433 * 5 4 3 36 36 H 1.08996 * 109.47545 * 35.01253 * 5 4 3 37 37 H 1.09002 * 109.47483 * 155.01498 * 5 4 3 38 38 H 1.09005 * 109.59425 * 353.93322 * 9 8 6 39 39 H 1.08995 * 109.59907 * 114.39099 * 9 8 6 40 40 H 1.08995 * 109.55252 * 186.46859 * 10 9 8 41 41 H 1.08992 * 109.36545 * 66.46594 * 10 9 8 42 42 H 1.09005 * 110.39162 * 23.90388 * 12 11 10 43 43 H 1.09006 * 110.39087 * 146.29339 * 12 11 10 44 44 H 1.08998 * 109.47541 * 186.45964 * 16 14 13 45 45 H 1.09006 * 109.47573 * 306.45529 * 16 14 13 46 46 H 0.97001 * 119.99627 * 359.97438 * 17 16 14 47 47 H 0.97005 * 119.99616 * 179.97438 * 21 20 18 48 48 H 1.09002 * 110.54493 * 237.25184 * 26 11 10 49 49 H 1.09001 * 110.54690 * 0.04847 * 26 11 10 50 50 H 1.09009 * 109.48565 * 180.12157 * 27 11 10 51 51 H 1.09002 * 109.49683 * 60.08401 * 27 11 10 52 52 H 1.09003 * 109.59917 * 245.60902 * 28 8 6 53 53 H 1.08998 * 109.59730 * 5.91063 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8250 1.8459 0.9797 5 6 3.4011 3.2376 0.9326 6 6 3.1393 0.9576 2.1094 7 8 2.5755 1.1081 3.1763 8 7 4.0559 -0.0196 1.9635 9 6 4.8219 -0.1455 0.7160 10 6 4.6641 -1.5675 0.1778 11 6 5.0373 -2.5668 1.2665 12 6 6.5167 -2.3992 1.6594 13 8 7.2216 -3.3738 0.8578 14 6 6.3817 -4.5493 0.8580 15 1 6.4963 -5.0973 1.7931 16 6 6.7247 -5.4491 -0.3308 17 7 8.0763 -5.9881 -0.1615 18 6 8.6030 -6.8260 -1.1079 19 1 8.0220 -7.0891 -1.9795 20 6 9.8839 -7.3362 -0.9475 21 7 10.5920 -7.0151 0.1144 22 14 10.6021 -8.4797 -2.2383 23 1 11.3174 -7.6801 -3.2651 24 1 11.5527 -9.4203 -1.5926 25 1 9.5071 -9.2478 -2.8836 26 6 4.9404 -4.0055 0.7262 27 6 4.1442 -2.4006 2.4901 28 6 4.3021 -0.9811 3.0468 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.7487 2.0938 -0.7956 35 1 4.3141 3.2329 0.3370 36 1 2.6767 3.9157 0.4817 37 1 3.6295 3.5707 1.9450 38 1 4.4440 0.5658 -0.0185 39 1 5.8755 0.0534 0.9122 40 1 5.3181 -1.7065 -0.6829 41 1 3.6287 -1.7273 -0.1227 42 1 6.8608 -1.3923 1.4228 43 1 6.6540 -2.6090 2.7202 44 1 6.0099 -6.2703 -0.3831 45 1 6.6781 -4.8679 -1.2519 46 1 8.5982 -5.7515 0.6212 47 1 11.4870 -7.3721 0.2266 48 1 4.2520 -4.5957 1.3311 49 1 4.6269 -4.0017 -0.3178 50 1 4.4333 -3.1243 3.2524 51 1 3.1047 -2.5665 2.2071 52 1 5.3141 -0.8491 3.4298 53 1 3.5834 -0.8188 3.8500 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276912642.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:23 Heat of formation + Delta-G solvation = -85.287194 kcal Electronic energy + Delta-G solvation = -30566.440567 eV Core-core repulsion = 26630.236030 eV Total energy + Delta-G solvation = -3936.204537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.01013 -40.64926 -37.97013 -36.87222 -36.34291 -34.35687 -33.49971 -33.14224 -32.20186 -31.09410 -28.46339 -27.84846 -26.74873 -25.55789 -24.74874 -24.18360 -23.37452 -22.49207 -21.95282 -20.22075 -19.20129 -19.01017 -17.83366 -17.19123 -16.96999 -16.66699 -16.48576 -16.39313 -16.31475 -15.57213 -15.30576 -15.18792 -14.99452 -14.87501 -14.52922 -14.40226 -14.07972 -13.94661 -13.79712 -13.76172 -13.60539 -13.35161 -13.30492 -13.05947 -12.96937 -12.83578 -12.76110 -12.45625 -12.24188 -12.21033 -12.06436 -12.01160 -11.93427 -11.85641 -11.52950 -11.37947 -11.27545 -10.96573 -10.86246 -10.58838 -9.87610 -9.67969 -8.99930 -7.93702 -5.23220 0.81326 1.47171 1.50042 1.53830 1.58334 2.01334 2.56481 2.99364 3.39808 3.42204 3.48611 3.58944 3.77353 3.83590 3.91163 4.04650 4.06598 4.13712 4.18998 4.24801 4.34212 4.38132 4.40503 4.49620 4.53165 4.54203 4.56419 4.61867 4.67566 4.73310 4.78010 4.79066 4.82789 4.91761 4.92844 4.97953 5.00623 5.02763 5.07136 5.10156 5.17699 5.21635 5.23825 5.28918 5.30676 5.45249 5.48316 5.53432 5.65470 6.04572 6.27752 6.32324 7.06107 7.33495 8.09742 8.33092 9.30243 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.002293 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.776106 B =12208.571416 C =12488.912998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.096 4.096 4 C -0.186 4.186 5 C -0.102 4.102 6 C 0.559 3.441 7 O -0.589 6.589 8 N -0.599 5.599 9 C 0.106 3.894 10 C -0.115 4.115 11 C -0.078 4.078 12 C 0.044 3.956 13 O -0.390 6.390 14 C 0.074 3.926 15 H 0.056 0.944 16 C 0.157 3.843 17 N -0.745 5.745 18 C -0.246 4.246 19 H 0.078 0.922 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.977 3.023 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.266 1.266 26 C -0.126 4.126 27 C -0.109 4.109 28 C 0.107 3.893 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.152 0.848 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.041 0.959 45 H 0.023 0.977 46 H 0.373 0.627 47 H 0.251 0.749 48 H 0.093 0.907 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.075 0.925 52 H 0.075 0.925 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.033 19.800 0.062 28.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.115 4.115 4 C -0.189 4.189 5 C -0.159 4.159 6 C 0.350 3.650 7 O -0.470 6.470 8 N -0.331 5.331 9 C -0.016 4.016 10 C -0.153 4.153 11 C -0.079 4.079 12 C -0.032 4.032 13 O -0.310 6.310 14 C 0.016 3.984 15 H 0.074 0.926 16 C 0.031 3.969 17 N -0.387 5.387 18 C -0.378 4.378 19 H 0.096 0.904 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.806 3.194 23 H -0.214 1.214 24 H -0.221 1.221 25 H -0.191 1.191 26 C -0.164 4.164 27 C -0.147 4.147 28 C -0.015 4.015 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.069 0.931 34 H 0.169 0.831 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.041 0.959 46 H 0.205 0.795 47 H 0.060 0.940 48 H 0.112 0.888 49 H 0.104 0.896 50 H 0.104 0.896 51 H 0.093 0.907 52 H 0.093 0.907 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.128 19.791 0.359 28.952 hybrid contribution 0.917 -0.768 0.212 1.215 sum -20.211 19.023 0.571 27.761 Atomic orbital electron populations 1.21667 0.94235 1.02251 1.02050 1.20917 0.97075 0.94039 1.02815 1.23617 0.94109 0.97533 0.96222 1.21530 1.04209 0.98025 0.95128 1.20699 1.01949 0.90728 1.02499 1.19012 0.77838 0.80125 0.88045 1.90772 1.53761 1.72660 1.29780 1.48236 1.38386 1.29427 1.17043 1.21888 0.96346 0.98074 0.85307 1.21795 1.03175 0.92933 0.97402 1.21387 0.94979 0.95213 0.96313 1.23720 0.90779 0.93581 0.95127 1.89296 1.45217 1.24489 1.71954 1.23171 0.90395 0.87179 0.97629 0.92560 1.20914 0.86513 0.93947 0.95523 1.42536 1.14291 1.56156 1.25711 1.19676 0.97751 1.19299 1.01058 0.90421 1.25645 0.97730 1.03418 1.00354 1.69850 1.11483 1.50376 1.30522 0.85084 0.78059 0.78191 0.78084 1.21398 1.22147 1.19103 1.22944 0.95101 0.95099 1.03288 1.21826 1.00079 0.96043 0.96787 1.21668 1.02164 0.87850 0.89833 0.92059 0.94072 0.90901 0.88623 0.93053 0.83080 0.89369 0.89386 0.93155 0.87658 0.90543 0.90077 0.89900 0.88422 0.92282 0.94156 0.95922 0.79537 0.94038 0.88811 0.89581 0.89612 0.90677 0.90685 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.89 71.98 0.71 -0.96 16 2 C -0.11 -1.35 5.44 29.85 0.16 -1.19 16 3 C -0.10 -1.09 8.58 24.52 0.21 -0.88 16 4 C -0.19 -2.84 4.02 -18.70 -0.08 -2.91 16 5 C -0.10 -1.17 10.02 71.23 0.71 -0.45 16 6 C 0.56 12.04 5.31 86.57 0.46 12.50 16 7 O -0.59 -17.82 16.53 -4.06 -0.07 -17.88 16 8 N -0.60 -10.59 2.53 -823.62 -2.08 -12.67 16 9 C 0.11 1.48 5.84 86.25 0.50 1.98 16 10 C -0.12 -1.75 4.67 30.35 0.14 -1.61 16 11 C -0.08 -1.45 0.68 -51.91 -0.04 -1.49 16 12 C 0.04 1.06 5.64 72.31 0.41 1.47 16 13 O -0.39 -13.76 11.33 -148.98 -1.69 -15.45 16 14 C 0.07 2.41 3.33 31.14 0.10 2.52 16 15 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 16 C 0.16 6.40 5.88 86.38 0.51 6.91 16 17 N -0.74 -39.75 5.58 -343.46 -1.92 -41.67 16 18 C -0.25 -14.16 9.99 84.03 0.84 -13.32 16 19 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 20 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 21 N -0.97 -61.48 13.06 21.65 0.28 -61.20 16 22 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 C -0.13 -2.76 5.91 31.48 0.19 -2.57 16 27 C -0.11 -1.77 4.55 30.49 0.14 -1.63 16 28 C 0.11 1.93 6.13 86.40 0.53 2.46 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 0.89 7.73 -2.39 -0.02 0.87 16 33 H 0.05 0.84 5.84 -2.38 -0.01 0.83 16 34 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 35 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.09 0.71 8.10 -2.39 -0.02 0.69 16 37 H 0.05 0.74 8.08 -2.39 -0.02 0.72 16 38 H 0.11 1.16 5.88 -2.38 -0.01 1.15 16 39 H 0.08 1.07 6.44 -2.39 -0.02 1.06 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.09 6.94 -2.39 -0.02 1.08 16 42 H 0.10 2.08 6.00 -2.38 -0.01 2.06 16 43 H 0.06 1.36 7.70 -2.38 -0.02 1.34 16 44 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.37 21.62 7.67 -92.71 -0.71 20.91 16 47 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 48 H 0.09 1.74 7.71 -2.39 -0.02 1.72 16 49 H 0.09 1.79 7.45 -2.39 -0.02 1.77 16 50 H 0.09 1.33 8.12 -2.38 -0.02 1.31 16 51 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.07 1.28 7.45 -2.39 -0.02 1.26 16 53 H 0.08 1.69 7.02 -2.39 -0.02 1.67 16 Total: -1.00 -76.10 406.90 2.71 -73.40 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.18 Total: 30.01 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 5.97 Total: -3.43 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -3.72 Total: -115.55 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -1.75 Total: -33.33 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -76.10 2.71 -73.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276912642.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.890 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds