Wall clock time and date at job start Tue Mar 31 2020 20:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47003 * 2 1 4 4 C 1.32996 * 120.00440 * 120.39501 * 3 2 1 5 5 C 1.50693 * 119.99611 * 4.98970 * 4 3 2 6 6 C 1.47102 * 119.99938 * 184.99377 * 4 3 2 7 7 O 1.21614 * 119.99840 * 255.34821 * 6 4 3 8 8 N 1.34773 * 120.00299 * 75.34948 * 6 4 3 9 9 C 1.46935 * 120.58888 * 5.07142 * 8 6 4 10 10 C 1.52848 * 108.95222 * 234.16681 * 9 8 6 11 11 C 1.52424 * 109.48658 * 306.50082 * 10 9 8 12 12 C 1.53602 * 110.44310 * 296.88073 * 11 10 9 13 13 O 1.43885 * 107.11828 * 239.50964 * 12 11 10 14 14 C 1.44424 * 107.00130 * 26.36166 * 13 12 11 15 15 H 1.09003 * 110.60323 * 78.92721 * 14 13 12 16 16 C 1.53002 * 110.60982 * 201.74026 * 14 13 12 17 17 N 1.46500 * 109.47263 * 298.54856 * 16 14 13 18 18 C 1.36934 * 120.00219 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99752 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99978 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00360 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99874 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47279 * 89.99744 * 22 20 18 24 24 H 1.48499 * 109.47079 * 209.99830 * 22 20 18 25 25 H 1.48503 * 109.47032 * 329.99558 * 22 20 18 26 26 C 1.54327 * 110.03746 * 181.80966 * 11 10 9 27 27 C 1.52422 * 110.98705 * 59.74162 * 11 10 9 28 28 C 1.46933 * 120.59216 * 185.35621 * 8 6 4 29 29 H 1.09004 * 109.47115 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47446 * 300.00437 * 1 2 3 31 31 H 1.08999 * 109.46852 * 60.00578 * 1 2 3 32 32 H 1.08993 * 109.47123 * 239.99307 * 2 1 3 33 33 H 1.08999 * 109.46852 * 119.99422 * 2 1 3 34 34 H 1.08009 * 119.99834 * 300.39431 * 3 2 1 35 35 H 1.09006 * 109.47466 * 64.83900 * 5 4 3 36 36 H 1.09007 * 109.47033 * 184.83288 * 5 4 3 37 37 H 1.08996 * 109.47752 * 304.83563 * 5 4 3 38 38 H 1.08997 * 109.59167 * 353.98583 * 9 8 6 39 39 H 1.09000 * 109.59158 * 114.43620 * 9 8 6 40 40 H 1.09003 * 109.54476 * 186.43557 * 10 9 8 41 41 H 1.08999 * 109.34169 * 66.44385 * 10 9 8 42 42 H 1.08998 * 109.91054 * 358.88101 * 12 11 10 43 43 H 1.09006 * 109.90746 * 119.95298 * 12 11 10 44 44 H 1.09003 * 109.46952 * 58.55067 * 16 14 13 45 45 H 1.09000 * 109.46873 * 178.54613 * 16 14 13 46 46 H 0.97005 * 119.99545 * 359.97438 * 17 16 14 47 47 H 0.97000 * 120.00593 * 180.02562 * 21 20 18 48 48 H 1.08999 * 110.92825 * 216.20914 * 26 11 10 49 49 H 1.08995 * 110.92811 * 339.87031 * 26 11 10 50 50 H 1.08997 * 109.47822 * 180.16053 * 27 11 10 51 51 H 1.09001 * 109.47729 * 60.13567 * 27 11 10 52 52 H 1.08993 * 109.59550 * 245.57928 * 28 8 6 53 53 H 1.09005 * 109.58748 * 5.87505 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8034 1.8536 0.9934 5 6 3.2673 0.8950 2.0595 6 6 3.2032 3.2681 1.0515 7 8 4.3350 3.5930 0.7474 8 7 2.3154 4.2039 1.4418 9 6 0.9805 3.8158 1.9177 10 6 -0.0740 4.5671 1.1054 11 6 0.2168 6.0626 1.1544 12 6 0.1077 6.5834 2.5953 13 8 -0.9120 7.5985 2.6027 14 6 -1.8130 7.3000 1.5142 15 1 -2.5001 6.5011 1.7931 16 6 -2.5866 8.5522 1.0965 17 7 -3.3918 9.0275 2.2243 18 6 -4.1733 10.1434 2.0855 19 1 -4.1957 10.6733 1.1446 20 6 -4.9358 10.5940 3.1542 21 7 -4.9081 9.9486 4.3009 22 14 -6.0025 12.1159 2.9645 23 1 -7.3524 11.7183 2.4904 24 1 -6.1209 12.8039 4.2752 25 1 -5.3820 13.0353 1.9771 26 6 -0.8667 6.8377 0.3755 27 6 1.5946 6.3700 0.5796 28 6 2.6628 5.6307 1.3931 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.7661 2.0877 -0.8068 35 1 3.9220 0.1456 1.6145 36 1 3.8122 1.4427 2.8285 37 1 2.4036 0.4032 2.5069 38 1 0.8439 2.7423 1.7875 39 1 0.8788 4.0743 2.9717 40 1 -1.0619 4.3750 1.5240 41 1 -0.0444 4.2248 0.0710 42 1 -0.1738 5.7698 3.2638 43 1 1.0610 7.0086 2.9095 44 1 -1.8843 9.3304 0.7979 45 1 -3.2409 8.3123 0.2584 46 1 -3.3714 8.5518 3.0694 47 1 -5.4412 10.2633 5.0476 48 1 -0.4356 7.6935 -0.1440 49 1 -1.3882 6.1827 -0.3224 50 1 1.7779 7.4433 0.6292 51 1 1.6366 6.0416 -0.4589 52 1 2.6954 6.0338 2.4052 53 1 3.6366 5.7537 0.9191 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276912643.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:26 Heat of formation + Delta-G solvation = -85.989124 kcal Electronic energy + Delta-G solvation = -30188.498336 eV Core-core repulsion = 26252.263360 eV Total energy + Delta-G solvation = -3936.234975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.95599 -40.60855 -38.00657 -37.21068 -36.35530 -34.42265 -33.50558 -32.78774 -32.08101 -31.06645 -28.50258 -27.93363 -26.79071 -25.77592 -24.79973 -24.32640 -23.55307 -22.10487 -21.62193 -20.10967 -19.19588 -18.94311 -18.00563 -17.29407 -17.24694 -16.75461 -16.55496 -16.27043 -16.21953 -15.52715 -15.29068 -15.22239 -15.05903 -14.81765 -14.66692 -14.42055 -14.22659 -13.98467 -13.87013 -13.66190 -13.44216 -13.31894 -13.07935 -13.03972 -12.89033 -12.76725 -12.75481 -12.49451 -12.32214 -12.25983 -12.19822 -12.09428 -11.92492 -11.65278 -11.49324 -11.40126 -11.29962 -10.96638 -10.88362 -10.51621 -9.86289 -9.71760 -8.99637 -7.93745 -5.23159 0.74770 1.46813 1.49609 1.52149 1.57991 1.99996 2.56014 2.96673 3.37994 3.39181 3.41610 3.58308 3.73102 3.89929 3.98701 4.02863 4.05491 4.16261 4.21328 4.24265 4.30082 4.36315 4.36945 4.50358 4.52729 4.55813 4.57084 4.68630 4.71550 4.75000 4.76032 4.79118 4.82125 4.90290 4.94417 4.95948 5.00025 5.04636 5.08259 5.12193 5.18345 5.22202 5.25923 5.27865 5.38944 5.47548 5.48689 5.58016 5.64420 6.11188 6.28045 6.30052 7.02827 7.33722 8.10171 8.33825 9.30102 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021324 B = 0.002212 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.770764 B =12656.774963 C =13233.903154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.097 4.097 4 C -0.180 4.180 5 C -0.101 4.101 6 C 0.553 3.447 7 O -0.590 6.590 8 N -0.599 5.599 9 C 0.104 3.896 10 C -0.115 4.115 11 C -0.080 4.080 12 C 0.048 3.952 13 O -0.397 6.397 14 C 0.077 3.923 15 H 0.067 0.933 16 C 0.155 3.845 17 N -0.743 5.743 18 C -0.247 4.247 19 H 0.077 0.923 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.977 3.023 23 H -0.283 1.283 24 H -0.295 1.295 25 H -0.270 1.270 26 C -0.126 4.126 27 C -0.109 4.109 28 C 0.108 3.892 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.017 0.983 45 H 0.043 0.957 46 H 0.375 0.625 47 H 0.251 0.749 48 H 0.078 0.922 49 H 0.102 0.898 50 H 0.080 0.920 51 H 0.075 0.925 52 H 0.075 0.925 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.813 -23.835 -9.466 29.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 C -0.116 4.116 4 C -0.183 4.183 5 C -0.158 4.158 6 C 0.343 3.657 7 O -0.471 6.471 8 N -0.330 5.330 9 C -0.017 4.017 10 C -0.153 4.153 11 C -0.081 4.081 12 C -0.029 4.029 13 O -0.316 6.316 14 C 0.019 3.981 15 H 0.085 0.915 16 C 0.029 3.971 17 N -0.385 5.385 18 C -0.379 4.379 19 H 0.094 0.906 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.806 3.194 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.195 1.195 26 C -0.164 4.164 27 C -0.147 4.147 28 C -0.015 4.015 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.035 0.965 45 H 0.061 0.939 46 H 0.206 0.794 47 H 0.060 0.940 48 H 0.097 0.903 49 H 0.121 0.879 50 H 0.098 0.902 51 H 0.093 0.907 52 H 0.093 0.907 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 15.321 -23.326 -9.567 29.502 hybrid contribution -0.457 1.071 0.401 1.231 sum 14.864 -22.256 -9.166 28.289 Atomic orbital electron populations 1.21700 0.93803 1.02621 1.02331 1.20794 0.96795 0.92077 1.04022 1.23439 0.93568 0.98906 0.95680 1.21365 1.02832 0.92385 1.01726 1.20701 1.02205 0.97181 0.95678 1.19125 0.84013 0.87214 0.75323 1.90773 1.21627 1.83206 1.51481 1.48183 1.15138 1.06224 1.63447 1.21907 0.79858 1.01437 0.98544 1.21815 0.99318 0.92113 1.02062 1.21412 0.95575 0.96532 0.94539 1.23456 0.91832 0.91178 0.96407 1.89060 1.39747 1.50258 1.52562 1.23322 0.91738 0.96173 0.86823 0.91497 1.20919 0.92130 0.93496 0.90579 1.42493 1.52065 1.31844 1.12148 1.19673 1.17566 1.03286 0.97384 0.90553 1.25635 1.02847 1.02867 0.95726 1.69844 1.45876 1.43266 1.03130 0.85089 0.78726 0.79085 0.76539 1.21011 1.22210 1.19459 1.23139 0.95442 1.00656 0.97150 1.21784 0.92374 1.00771 0.99748 1.21687 0.98972 0.79690 1.01125 0.91407 0.92275 0.92593 0.89968 0.89619 0.87164 0.90146 0.93106 0.88539 0.87428 0.90507 0.89291 0.89904 0.91690 0.89914 0.96465 0.93944 0.79378 0.94005 0.90307 0.87931 0.90164 0.90674 0.90683 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 71.98 0.71 -0.21 16 2 C -0.10 -0.71 6.20 29.85 0.19 -0.52 16 3 C -0.10 -1.12 8.41 24.52 0.21 -0.91 16 4 C -0.18 -2.72 4.11 -18.71 -0.08 -2.80 16 5 C -0.10 -1.13 8.65 71.23 0.62 -0.52 16 6 C 0.55 12.07 6.99 86.57 0.61 12.68 16 7 O -0.59 -18.11 16.53 -4.08 -0.07 -18.18 16 8 N -0.60 -10.80 2.97 -823.65 -2.45 -13.25 16 9 C 0.10 1.39 5.97 86.25 0.51 1.90 16 10 C -0.12 -1.59 4.57 30.35 0.14 -1.45 16 11 C -0.08 -1.50 0.61 -51.91 -0.03 -1.53 16 12 C 0.05 1.17 6.16 72.18 0.44 1.62 16 13 O -0.40 -14.38 11.10 -148.98 -1.65 -16.03 16 14 C 0.08 2.48 3.42 31.32 0.11 2.59 16 15 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 16 C 0.16 6.38 6.02 86.38 0.52 6.90 16 17 N -0.74 -39.84 5.53 -343.45 -1.90 -41.74 16 18 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 19 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 20 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 21 N -0.97 -61.42 13.06 21.65 0.28 -61.14 16 22 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 C -0.13 -2.78 5.67 31.76 0.18 -2.60 16 27 C -0.11 -1.92 4.62 30.50 0.14 -1.78 16 28 C 0.11 2.04 6.12 86.39 0.53 2.57 16 29 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.47 5.81 -2.39 -0.01 0.46 16 34 H 0.11 1.35 8.05 -2.91 -0.02 1.33 16 35 H 0.08 0.80 8.13 -2.38 -0.02 0.78 16 36 H 0.05 0.70 7.99 -2.38 -0.02 0.68 16 37 H 0.10 0.64 7.28 -2.39 -0.02 0.62 16 38 H 0.11 1.09 5.79 -2.39 -0.01 1.08 16 39 H 0.08 1.02 6.90 -2.39 -0.02 1.00 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 1.45 6.61 -2.39 -0.02 1.43 16 43 H 0.08 1.94 6.44 -2.38 -0.02 1.92 16 44 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.37 21.70 7.62 -92.70 -0.71 20.99 16 47 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 48 H 0.08 1.79 7.75 -2.39 -0.02 1.77 16 49 H 0.10 1.80 7.83 -2.39 -0.02 1.78 16 50 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.07 1.37 6.80 -2.39 -0.02 1.36 16 53 H 0.08 1.77 7.03 -2.38 -0.02 1.76 16 Total: -1.00 -76.66 408.70 2.52 -74.14 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.18 Total: 28.83 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 6.10 Total: -1.76 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -4.06 Total: -116.13 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -1.72 Total: -34.21 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -76.66 2.52 -74.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276912643.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.850 kcal (2) G-P(sol) polarization free energy of solvation -76.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds