Wall clock time and date at job start Tue Mar 31 2020 19:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00012 * 2 1 4 4 C 1.52993 * 109.47260 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47060 * 65.00018 * 4 3 2 6 6 C 1.36936 * 120.00012 * 270.00114 * 5 4 3 7 7 H 1.07993 * 120.00559 * 141.80011 * 6 5 4 8 8 C 1.38817 * 119.99955 * 321.80020 * 6 5 4 9 9 N 1.31621 * 119.99794 * 339.27679 * 8 6 5 10 10 Si 1.86802 * 120.00122 * 159.27983 * 8 6 5 11 11 H 1.48496 * 109.47136 * 90.00270 * 10 8 6 12 12 H 1.48499 * 109.46712 * 210.00044 * 10 8 6 13 13 H 1.48499 * 109.47037 * 329.99795 * 10 8 6 14 14 C 1.46506 * 120.00299 * 90.00298 * 5 4 3 15 15 C 1.53038 * 109.46259 * 124.70574 * 14 5 4 16 16 C 1.53193 * 109.31013 * 181.38588 * 15 14 5 17 17 N 1.46923 * 108.77396 * 305.36057 * 16 15 14 18 18 C 1.34777 * 120.62966 * 233.58272 * 17 16 15 19 19 O 1.21610 * 120.00286 * 0.02562 * 18 17 16 20 20 C 1.43203 * 119.99889 * 180.02562 * 18 17 16 21 21 C 8.52676 * 103.98087 * 278.35005 * 2 1 3 22 22 C 9.31838 * 96.23516 * 276.38463 * 2 1 3 23 23 C 1.53003 * 109.46760 * 180.65931 * 22 21 20 24 24 C 1.53000 * 109.47021 * 300.65246 * 22 21 20 25 25 C 1.52991 * 109.47424 * 60.65607 * 22 21 20 26 26 C 1.46931 * 118.73653 * 53.86495 * 17 16 15 27 27 C 1.53042 * 109.45454 * 244.77326 * 14 5 4 28 28 H 1.09003 * 109.46837 * 60.00509 * 1 2 3 29 29 H 1.09006 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47393 * 299.99933 * 1 2 3 31 31 H 1.09004 * 109.47047 * 59.99320 * 3 2 1 32 32 H 1.09003 * 109.47298 * 299.99791 * 3 2 1 33 33 H 1.08997 * 109.47485 * 304.99806 * 4 3 2 34 34 H 1.09006 * 109.47338 * 184.99870 * 4 3 2 35 35 H 0.97000 * 119.99771 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.45409 * 4.72836 * 14 5 4 37 37 H 1.08996 * 109.50112 * 61.43214 * 15 14 5 38 38 H 1.09000 * 109.52101 * 301.35465 * 15 14 5 39 39 H 1.09001 * 109.58142 * 185.57652 * 16 15 14 40 40 H 1.08997 * 109.70457 * 65.22029 * 16 15 14 41 41 H 1.08996 * 109.47683 * 59.99404 * 23 22 21 42 42 H 1.08997 * 109.47168 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.46821 * 299.99770 * 23 22 21 44 44 H 1.09000 * 109.47270 * 60.00806 * 24 22 21 45 45 H 1.09006 * 109.47322 * 180.02562 * 24 22 21 46 46 H 1.09003 * 109.47357 * 300.00425 * 24 22 21 47 47 H 1.09001 * 109.47044 * 59.99687 * 25 22 21 48 48 H 1.09007 * 109.47277 * 179.97438 * 25 22 21 49 49 H 1.09000 * 109.47261 * 299.99435 * 25 22 21 50 50 H 1.08999 * 109.58771 * 65.92765 * 26 17 16 51 51 H 1.09003 * 109.58560 * 186.34820 * 26 17 16 52 52 H 1.08992 * 109.50125 * 298.55939 * 27 14 5 53 53 H 1.08999 * 109.49970 * 58.66641 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0978 -0.7975 -1.3345 7 1 3.8137 -1.3103 -2.2414 8 6 4.5858 -1.5185 -0.2533 9 7 5.3000 -0.9141 0.6724 10 14 4.2289 -3.3467 -0.1122 11 1 5.3032 -4.1146 -0.7914 12 1 4.1759 -3.7314 1.3211 13 1 2.9239 -3.6473 -0.7540 14 6 4.2883 1.3998 -2.4131 15 6 5.7095 1.0964 -2.8928 16 6 6.0443 1.9966 -4.0863 17 7 5.0099 1.8220 -5.1151 18 6 5.3470 1.5040 -6.3807 19 8 6.5167 1.3585 -6.6802 20 6 4.3278 1.3376 -7.3728 21 6 3.4891 1.2016 -8.1865 22 6 2.4411 1.0301 -9.2058 23 6 2.2997 -0.4547 -9.5469 24 6 1.1112 1.5577 -8.6637 25 6 2.8231 1.8088 -10.4661 26 6 3.6016 2.0066 -4.7393 27 6 3.2938 1.1009 -3.5373 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5686 0.8427 34 1 3.9785 2.1766 0.0902 35 1 5.6414 -1.4180 1.4277 36 1 4.2157 2.4510 -2.1342 37 1 5.7762 0.0514 -3.1954 38 1 6.4153 1.2867 -2.0843 39 1 7.0158 1.7169 -4.4938 40 1 6.0686 3.0381 -3.7657 41 1 2.0276 -1.0096 -8.6491 42 1 1.5240 -0.5817 -10.3021 43 1 3.2471 -0.8306 -9.9331 44 1 1.2119 2.6155 -8.4207 45 1 0.3350 1.4303 -9.4184 46 1 0.8390 1.0029 -7.7658 47 1 3.7706 1.4330 -10.8522 48 1 2.0472 1.6815 -11.2211 49 1 2.9238 2.8666 -10.2230 50 1 3.4290 3.0484 -4.4691 51 1 2.9608 1.7336 -5.5778 52 1 3.3832 0.0559 -3.8338 53 1 2.2800 1.2950 -3.1873 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277398899.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:42 Heat of formation + Delta-G solvation = -33.343225 kcal Electronic energy + Delta-G solvation = -30357.431868 eV Core-core repulsion = 26423.479790 eV Total energy + Delta-G solvation = -3933.952078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.26744 -39.21721 -38.47445 -38.28328 -36.56660 -34.02116 -33.32909 -32.18522 -31.85780 -29.78740 -28.21012 -28.17431 -27.14752 -26.83908 -25.42715 -24.46149 -23.57932 -22.32556 -21.69247 -20.72075 -19.11277 -18.07689 -17.63182 -17.21671 -16.73847 -16.64599 -16.51943 -16.42086 -15.68357 -15.48640 -15.27547 -15.26708 -15.19983 -15.15327 -14.67800 -14.52165 -13.81659 -13.48616 -13.38704 -13.31315 -13.27527 -13.18698 -12.93582 -12.74710 -12.72372 -12.61064 -12.54598 -12.35502 -12.27921 -12.25136 -12.22582 -12.11217 -11.82069 -11.63784 -11.52165 -11.46867 -11.30313 -11.12606 -11.06337 -10.39094 -10.27324 -9.76896 -8.41527 -7.70896 -5.29109 0.45037 1.20391 1.43281 1.46771 1.55270 1.89948 2.41135 2.57923 2.91262 3.25333 3.40320 3.60267 3.82692 3.93539 3.96183 3.97257 4.11363 4.18523 4.26287 4.39672 4.41979 4.46360 4.54976 4.61947 4.66320 4.70213 4.74257 4.75831 4.76445 4.80702 4.84676 4.85898 4.89475 4.93670 4.97000 4.97204 5.03132 5.06805 5.09458 5.18894 5.21766 5.35556 5.38398 5.40188 5.60368 5.62000 5.77582 5.88799 6.16118 6.21990 6.53936 6.72542 6.90154 7.31484 8.00452 8.49050 9.25182 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011253 B = 0.003180 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.624970 B = 8803.834536 C = 9350.067822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.056 3.944 4 C 0.141 3.859 5 N -0.583 5.583 6 C -0.218 4.218 7 H 0.037 0.963 8 C -0.026 4.026 9 N -0.917 5.917 10 Si 0.935 3.065 11 H -0.294 1.294 12 H -0.295 1.295 13 H -0.279 1.279 14 C 0.172 3.828 15 C -0.119 4.119 16 C 0.122 3.878 17 N -0.591 5.591 18 C 0.626 3.374 19 O -0.578 6.578 20 C -0.262 4.262 21 C -0.044 4.044 22 C 0.032 3.968 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.140 4.140 26 C 0.117 3.883 27 C -0.127 4.127 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.245 0.755 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.098 0.902 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.097 0.903 49 H 0.061 0.939 50 H 0.100 0.900 51 H 0.089 0.911 52 H 0.035 0.965 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.640 10.153 -16.218 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.023 4.023 4 C 0.014 3.986 5 N -0.302 5.302 6 C -0.349 4.349 7 H 0.055 0.945 8 C -0.222 4.222 9 N -0.563 5.563 10 Si 0.766 3.234 11 H -0.221 1.221 12 H -0.221 1.221 13 H -0.204 1.204 14 C 0.066 3.934 15 C -0.159 4.159 16 C 0.000 4.000 17 N -0.321 5.321 18 C 0.416 3.584 19 O -0.460 6.460 20 C -0.265 4.265 21 C -0.046 4.046 22 C 0.032 3.968 23 C -0.200 4.200 24 C -0.197 4.197 25 C -0.197 4.197 26 C -0.005 4.005 27 C -0.167 4.167 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.113 0.887 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.116 0.884 49 H 0.080 0.920 50 H 0.118 0.882 51 H 0.107 0.893 52 H 0.054 0.946 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.846 9.861 -16.156 22.329 hybrid contribution 0.228 -1.329 0.781 1.558 sum -11.618 8.533 -15.375 21.075 Atomic orbital electron populations 1.22798 0.81753 1.02378 1.00066 1.88153 1.19427 1.28922 1.95181 1.23260 0.96666 0.83872 0.98485 1.20981 0.89762 0.96328 0.91491 1.43879 1.75612 1.02044 1.08712 1.18623 1.33635 0.83339 0.99272 0.94521 1.25457 0.97437 0.99705 0.99641 1.70053 1.36295 1.36091 1.13826 0.85786 0.77734 0.83650 0.76243 1.22122 1.22111 1.20449 1.20542 0.91281 0.94174 0.87420 1.22080 0.99409 0.98392 0.96054 1.21716 0.90817 1.00726 0.86744 1.48082 1.09493 1.66922 1.07617 1.15063 0.85515 0.76403 0.81374 1.90779 1.20178 1.53746 1.81279 1.20598 0.98221 1.07882 0.99795 1.23463 0.94585 0.91592 0.94985 1.18302 0.89846 0.98401 0.90247 1.21944 1.03241 0.92075 1.02726 1.21933 0.94005 1.01499 1.02259 1.21924 1.02814 0.99722 0.95198 1.22027 0.79544 1.01125 0.97814 1.22285 1.00436 0.98599 0.95341 0.93667 0.90401 0.93627 0.93737 0.93773 0.91895 0.92626 0.94559 0.90911 0.94871 0.92283 0.90654 0.88495 0.92733 0.88302 0.92794 0.91713 0.88651 0.92419 0.92804 0.88445 0.92011 0.88225 0.89287 0.94606 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -16.52 10.18 -148.98 -1.52 -18.04 16 3 C 0.06 2.05 6.28 71.98 0.45 2.50 16 4 C 0.14 6.14 5.70 86.38 0.49 6.64 16 5 N -0.58 -26.82 2.34 -677.88 -1.59 -28.40 16 6 C -0.22 -11.66 7.60 84.03 0.64 -11.02 16 7 H 0.04 2.07 7.09 -2.91 -0.02 2.05 16 8 C -0.03 -1.46 4.97 84.86 0.42 -1.04 16 9 N -0.92 -53.44 11.47 21.65 0.25 -53.19 16 10 Si 0.94 46.90 29.60 68.60 2.03 48.93 16 11 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 12 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 13 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 14 C 0.17 6.42 2.60 45.02 0.12 6.54 16 15 C -0.12 -4.66 5.23 30.67 0.16 -4.50 16 16 C 0.12 3.93 6.43 86.36 0.56 4.49 16 17 N -0.59 -18.67 2.97 -827.01 -2.45 -21.12 16 18 C 0.63 22.24 7.55 85.49 0.65 22.88 16 19 O -0.58 -24.55 16.50 -4.06 -0.07 -24.62 16 20 C -0.26 -7.92 11.59 29.99 0.35 -7.58 16 21 C -0.04 -1.04 11.72 31.10 0.36 -0.68 16 22 C 0.03 0.48 0.95 -53.99 -0.05 0.43 16 23 C -0.14 -1.95 8.43 71.98 0.61 -1.34 16 24 C -0.14 -1.56 8.43 71.98 0.61 -0.95 16 25 C -0.14 -1.63 8.43 71.98 0.61 -1.02 16 26 C 0.12 3.04 6.35 86.51 0.55 3.59 16 27 C -0.13 -4.14 5.39 30.82 0.17 -3.98 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 3.32 5.54 -2.39 -0.01 3.31 16 34 H 0.06 2.18 7.88 -2.38 -0.02 2.16 16 35 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 36 H 0.07 2.37 7.77 -2.39 -0.02 2.35 16 37 H 0.03 1.53 7.62 -2.39 -0.02 1.51 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.07 2.64 7.00 -2.39 -0.02 2.62 16 40 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 46 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 49 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 50 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.09 2.12 6.31 -2.39 -0.02 2.10 16 52 H 0.04 1.41 7.24 -2.39 -0.02 1.39 16 53 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -72.11 424.35 5.45 -66.66 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.86 Total: 12.78 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 7.93 Total: 17.01 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -3.79 Total: -102.71 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -1.58 Total: -42.66 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -72.11 5.45 -66.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277398899.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.318 kcal (2) G-P(sol) polarization free energy of solvation -72.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds