Wall clock time and date at job start Tue Mar 31 2020 20:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47484 * 2 1 4 4 C 1.53003 * 109.47470 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47470 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47291 * 175.33394 * 5 4 3 7 7 H 1.09005 * 109.87523 * 53.18413 * 6 5 4 8 8 C 1.54330 * 109.88562 * 292.01224 * 6 5 4 9 9 C 1.55158 * 102.94137 * 218.38948 * 8 6 5 10 10 C 1.54908 * 101.58499 * 35.49840 * 9 8 6 11 11 N 1.47025 * 109.88620 * 174.20197 * 6 5 4 12 12 C 1.34778 * 125.64726 * 298.32442 * 11 6 5 13 13 O 1.21349 * 119.99905 * 4.40261 * 12 11 6 14 14 C 1.49448 * 120.00056 * 184.39800 * 12 11 6 15 15 O 1.21352 * 120.00160 * 354.50921 * 14 12 11 16 16 N 1.34777 * 119.99670 * 174.51141 * 14 12 11 17 17 C 1.46507 * 119.99623 * 185.02137 * 16 14 12 18 18 C 1.52996 * 109.47106 * 184.80490 * 17 16 14 19 19 C 1.50703 * 115.55063 * 305.70093 * 18 17 16 20 20 H 1.08000 * 120.00113 * 144.25136 * 19 18 17 21 21 C 1.37885 * 119.99853 * 324.25919 * 19 18 17 22 22 N 1.31513 * 119.99790 * 3.16355 * 21 19 18 23 23 Si 1.86793 * 119.99729 * 183.16914 * 21 19 18 24 24 H 1.48502 * 109.47311 * 89.99532 * 23 21 19 25 25 H 1.48500 * 109.46938 * 209.99694 * 23 21 19 26 26 H 1.48497 * 109.47588 * 329.99536 * 23 21 19 27 27 C 1.53001 * 117.50061 * 160.03196 * 18 17 16 28 28 C 1.53000 * 117.49955 * 91.36905 * 18 17 16 29 29 H 1.09005 * 109.47037 * 59.99566 * 1 2 3 30 30 H 1.09001 * 109.47870 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47266 * 300.00492 * 1 2 3 32 32 H 1.08997 * 109.47342 * 240.00015 * 2 1 3 33 33 H 1.09005 * 109.47037 * 120.00434 * 2 1 3 34 34 H 1.09008 * 109.47390 * 60.00050 * 3 2 1 35 35 H 1.08998 * 109.47613 * 299.99996 * 3 2 1 36 36 H 1.08998 * 109.46866 * 300.00657 * 4 3 2 37 37 H 1.08999 * 109.46536 * 59.99747 * 4 3 2 38 38 H 1.09007 * 109.47235 * 295.33822 * 5 4 3 39 39 H 1.09003 * 109.47188 * 55.33520 * 5 4 3 40 40 H 1.09005 * 110.71489 * 336.74761 * 8 6 5 41 41 H 1.08996 * 110.71926 * 100.02209 * 8 6 5 42 42 H 1.08997 * 111.00158 * 277.42261 * 9 8 6 43 43 H 1.09002 * 111.03457 * 153.58964 * 9 8 6 44 44 H 1.08994 * 110.36733 * 204.15023 * 10 9 8 45 45 H 1.09002 * 110.36801 * 81.82700 * 10 9 8 46 46 H 0.96994 * 120.00675 * 5.02393 * 16 14 12 47 47 H 1.09001 * 109.46779 * 304.80386 * 17 16 14 48 48 H 1.08998 * 109.47157 * 64.80513 * 17 16 14 49 49 H 0.97003 * 119.99875 * 185.00380 * 22 21 19 50 50 H 1.08997 * 117.49603 * 359.97438 * 27 18 17 51 51 H 1.09000 * 117.49648 * 145.01772 * 27 18 17 52 52 H 1.09003 * 117.49937 * 214.97798 * 28 18 17 53 53 H 1.09000 * 117.49724 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8848 0.0013 6 6 5.6055 2.8863 0.1193 7 1 6.0376 2.2506 -0.6536 8 6 6.0245 2.3792 1.5153 9 6 7.2329 3.2869 1.8665 10 6 6.8064 4.6329 1.2294 11 7 6.1164 4.2581 -0.0183 12 6 5.9775 5.0427 -1.1053 13 8 5.3203 4.6591 -2.0505 14 6 6.6330 6.3852 -1.1465 15 8 7.2061 6.8110 -0.1653 16 7 6.5874 7.1229 -2.2735 17 6 7.3217 8.3883 -2.3508 18 6 7.0086 9.0793 -3.6795 19 6 7.2468 8.2503 -4.9153 20 1 6.5890 8.3481 -5.7662 21 6 8.3046 7.3669 -4.9594 22 7 9.0682 7.2020 -3.9015 23 14 8.6529 6.4045 -6.5220 24 1 9.5848 7.1772 -7.3820 25 1 9.2688 5.0992 -6.1725 26 1 7.3819 6.1718 -7.2539 27 6 7.2775 10.5825 -3.7746 28 6 5.8386 10.0648 -3.7046 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 3.9330 0.9286 0.8908 37 1 3.9337 0.9284 -0.8891 38 1 3.7870 3.3743 -0.9275 39 1 3.6498 3.4220 0.8465 40 1 5.2168 2.5173 2.2342 41 1 6.3279 1.3333 1.4706 42 1 8.1489 2.9116 1.4103 43 1 7.3482 3.3846 2.9460 44 1 7.6824 5.2432 1.0099 45 1 6.1268 5.1681 1.8927 46 1 6.0684 6.8162 -3.0334 47 1 7.0209 9.0339 -1.5257 48 1 8.3919 8.1918 -2.2869 49 1 9.8545 6.6364 -3.9543 50 1 7.6770 11.0792 -2.8904 51 1 7.6263 10.9718 -4.7310 52 1 5.2414 10.1139 -4.6152 53 1 5.2922 10.2212 -2.7745 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324390697.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:28 Heat of formation + Delta-G solvation = -80.796155 kcal Electronic energy + Delta-G solvation = -30029.771857 eV Core-core repulsion = 26093.762066 eV Total energy + Delta-G solvation = -3936.009791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.81575 -40.06495 -38.70888 -38.44564 -36.94949 -34.92053 -34.16526 -33.68733 -32.53391 -29.91258 -28.48445 -27.53160 -26.60253 -25.53300 -23.18547 -22.92860 -22.83652 -21.87060 -21.50292 -21.22046 -20.34135 -18.86347 -18.10608 -17.91312 -17.21471 -16.83540 -16.67460 -16.41229 -16.15720 -15.74123 -15.30305 -15.05219 -14.92065 -14.74281 -14.55414 -14.38959 -14.19800 -13.87233 -13.80569 -13.63876 -13.37779 -13.33807 -13.03467 -12.95896 -12.65485 -12.62906 -12.41680 -12.33984 -12.15653 -12.07268 -11.96667 -11.84908 -11.69158 -11.53395 -11.51632 -11.39502 -11.27398 -10.95713 -10.74385 -10.42132 -10.16528 -9.90401 -9.71041 -8.01986 -6.23888 0.48395 1.37639 1.40551 1.43186 1.50260 2.26515 2.38443 2.65412 3.02418 3.47139 3.62104 3.64105 3.72251 3.74502 4.03465 4.07710 4.17285 4.21919 4.26411 4.34352 4.39404 4.48837 4.54792 4.56142 4.69527 4.70955 4.74857 4.81766 4.89290 4.92224 4.94762 4.96464 4.98352 5.05965 5.07598 5.08688 5.12130 5.19049 5.22159 5.25943 5.32715 5.34803 5.41025 5.48190 5.49126 5.53757 5.56648 5.65386 5.91091 6.14208 6.32533 6.45040 6.75789 6.87003 7.15881 7.40953 8.86689 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.002849 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.827397 B = 9826.166466 C =10440.194078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.119 4.119 4 C -0.106 4.106 5 C -0.125 4.125 6 C 0.126 3.874 7 H 0.066 0.934 8 C -0.113 4.113 9 C -0.126 4.126 10 C 0.089 3.911 11 N -0.587 5.587 12 C 0.518 3.482 13 O -0.549 6.549 14 C 0.493 3.507 15 O -0.557 6.557 16 N -0.649 5.649 17 C 0.174 3.826 18 C 0.000 4.000 19 C -0.504 4.504 20 H 0.056 0.944 21 C 0.035 3.965 22 N -0.892 5.892 23 Si 0.947 3.053 24 H -0.274 1.274 25 H -0.291 1.291 26 H -0.271 1.271 27 C -0.189 4.189 28 C -0.190 4.190 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.407 0.593 47 H 0.033 0.967 48 H 0.090 0.910 49 H 0.258 0.742 50 H 0.082 0.918 51 H 0.079 0.921 52 H 0.082 0.918 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.271 -13.604 14.052 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.144 4.144 5 C -0.164 4.164 6 C 0.024 3.976 7 H 0.084 0.916 8 C -0.151 4.151 9 C -0.164 4.164 10 C -0.033 4.033 11 N -0.320 5.320 12 C 0.301 3.699 13 O -0.427 6.427 14 C 0.273 3.727 15 O -0.438 6.438 16 N -0.296 5.296 17 C 0.052 3.948 18 C 0.000 4.000 19 C -0.541 4.541 20 H 0.074 0.926 21 C -0.166 4.166 22 N -0.530 5.530 23 Si 0.773 3.227 24 H -0.200 1.200 25 H -0.217 1.217 26 H -0.195 1.195 27 C -0.227 4.227 28 C -0.227 4.227 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.092 0.908 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.242 0.758 47 H 0.051 0.949 48 H 0.107 0.893 49 H 0.068 0.932 50 H 0.100 0.900 51 H 0.098 0.902 52 H 0.100 0.900 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.075 -13.597 14.224 21.669 hybrid contribution 0.247 -0.035 -1.742 1.760 sum -8.828 -13.631 12.482 20.483 Atomic orbital electron populations 1.21794 0.95768 1.01945 1.01687 1.21516 0.96004 0.96136 1.02325 1.21599 0.95107 0.97374 1.01595 1.21495 0.95581 0.94533 1.02825 1.21911 0.93797 0.98822 1.01844 1.22024 0.94728 0.80840 1.00042 0.91633 1.22767 0.98538 1.00790 0.92959 1.22857 0.98283 0.92610 1.02655 1.22796 0.97655 0.99005 0.83800 1.48476 1.53917 1.15409 1.14230 1.19962 0.81487 0.85941 0.82532 1.90695 1.41040 1.74560 1.36411 1.20113 0.82122 0.86189 0.84285 1.90593 1.45969 1.72299 1.34929 1.45571 1.47327 1.21947 1.14707 1.20995 0.98003 0.81688 0.94162 1.19284 0.98410 0.88505 0.93829 1.20730 1.12934 1.21221 0.99249 0.92573 1.25552 0.96168 0.96561 0.98324 1.69984 1.15481 1.39081 1.28428 0.85717 0.78415 0.77937 0.80611 1.20014 1.21710 1.19529 1.22961 0.98798 0.99750 1.01204 1.22965 0.90887 1.07464 1.01405 0.93451 0.92061 0.92469 0.92404 0.90912 0.91596 0.93679 0.89446 0.92628 0.93816 0.91309 0.88450 0.87522 0.90830 0.86783 0.90365 0.90462 0.75777 0.94855 0.89281 0.93174 0.89986 0.90205 0.89958 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.29 16 2 C -0.12 -1.67 5.93 30.59 0.18 -1.49 16 3 C -0.12 -1.97 5.21 30.59 0.16 -1.81 16 4 C -0.11 -1.82 5.13 30.59 0.16 -1.66 16 5 C -0.13 -2.90 4.69 30.59 0.14 -2.75 16 6 C 0.13 3.00 2.91 45.34 0.13 3.13 16 7 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 8 C -0.11 -1.63 5.58 31.79 0.18 -1.45 16 9 C -0.13 -2.09 7.08 31.99 0.23 -1.86 16 10 C 0.09 2.33 6.14 86.86 0.53 2.86 16 11 N -0.59 -18.43 3.06 -789.62 -2.42 -20.85 16 12 C 0.52 20.83 7.73 87.27 0.67 21.51 16 13 O -0.55 -24.23 15.29 -3.24 -0.05 -24.28 16 14 C 0.49 21.84 7.84 87.27 0.68 22.53 16 15 O -0.56 -25.22 13.75 -3.25 -0.04 -25.27 16 16 N -0.65 -30.34 5.16 -464.40 -2.40 -32.74 16 17 C 0.17 8.39 4.63 86.38 0.40 8.79 16 18 C 0.00 0.02 2.06 -52.93 -0.11 -0.09 16 19 C -0.50 -26.20 8.29 25.60 0.21 -25.99 16 20 H 0.06 2.93 7.82 -2.91 -0.02 2.90 16 21 C 0.04 1.85 5.31 84.66 0.45 2.30 16 22 N -0.89 -48.50 10.20 21.45 0.22 -48.29 16 23 Si 0.95 42.93 29.54 68.60 2.03 44.95 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 C -0.19 -7.99 9.96 30.62 0.30 -7.68 16 28 C -0.19 -7.75 9.92 30.62 0.30 -7.45 16 29 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.82 8.14 -2.38 -0.02 0.81 16 34 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.07 7.38 -2.39 -0.02 1.06 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.04 1.35 6.56 -2.38 -0.02 1.33 16 39 H 0.07 1.48 8.00 -2.39 -0.02 1.46 16 40 H 0.10 1.10 7.75 -2.38 -0.02 1.08 16 41 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.08 2.51 6.05 -2.39 -0.01 2.49 16 45 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.41 19.68 7.42 -92.71 -0.69 18.99 16 47 H 0.03 1.54 8.05 -2.39 -0.02 1.52 16 48 H 0.09 4.84 5.92 -2.39 -0.01 4.82 16 49 H 0.26 13.76 8.32 -92.71 -0.77 12.99 16 50 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 51 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 52 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 53 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -62.00 418.34 2.87 -59.13 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: 0.19 Total: 39.76 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 5.34 Total: 7.58 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -4.60 Total: -101.87 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.09 Total: -49.55 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -62.00 2.87 -59.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324390697.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.665 kcal (2) G-P(sol) polarization free energy of solvation -62.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds