Wall clock time and date at job start Tue Mar 31 2020 20:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00234 * 2 1 4 4 C 1.53002 * 109.46934 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.47050 * 240.00407 * 3 2 1 6 6 C 1.52993 * 109.47181 * 119.99969 * 3 2 1 7 7 C 1.52998 * 109.46919 * 180.02562 * 6 3 2 8 8 C 1.53006 * 109.46913 * 180.02562 * 7 6 3 9 9 N 1.46501 * 109.47082 * 180.02562 * 8 7 6 10 10 C 1.34774 * 120.00243 * 180.02562 * 9 8 7 11 11 O 1.21357 * 119.99737 * 359.97438 * 10 9 8 12 12 C 1.49450 * 120.00173 * 179.97438 * 10 9 8 13 13 O 1.21345 * 120.00237 * 353.32917 * 12 10 9 14 14 N 1.34779 * 119.99959 * 173.33642 * 12 10 9 15 15 C 1.46926 * 120.62965 * 173.06654 * 14 12 10 16 16 C 1.53192 * 108.89029 * 233.55576 * 15 14 12 17 17 C 1.53071 * 109.29669 * 305.57921 * 16 15 14 18 18 C 1.50702 * 109.44365 * 181.24072 * 17 16 15 19 19 H 1.08007 * 119.99829 * 239.79782 * 18 17 16 20 20 C 1.37879 * 120.00166 * 59.78883 * 18 17 16 21 21 N 1.31515 * 119.99785 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99970 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47098 * 90.00321 * 22 20 18 24 24 H 1.48500 * 109.46833 * 210.00496 * 22 20 18 25 25 H 1.48499 * 109.47091 * 330.00443 * 22 20 18 26 26 C 1.53039 * 109.66157 * 61.15585 * 17 16 15 27 27 C 1.46927 * 120.62872 * 353.08530 * 14 12 10 28 28 H 1.08010 * 119.99818 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00146 * 359.97438 * 1 2 3 30 30 H 1.08007 * 119.99495 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.46920 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47068 * 300.00244 * 4 3 2 33 33 H 1.09003 * 109.47002 * 59.99794 * 4 3 2 34 34 H 1.08993 * 109.46910 * 299.99663 * 5 3 2 35 35 H 1.08994 * 109.47078 * 59.99992 * 5 3 2 36 36 H 1.09001 * 109.46526 * 179.97438 * 5 3 2 37 37 H 1.09005 * 109.47063 * 60.00575 * 6 3 2 38 38 H 1.08998 * 109.47418 * 300.00214 * 6 3 2 39 39 H 1.09001 * 109.47337 * 60.00375 * 7 6 3 40 40 H 1.09003 * 109.47515 * 299.99965 * 7 6 3 41 41 H 1.08993 * 109.47263 * 59.99970 * 8 7 6 42 42 H 1.09003 * 109.47332 * 299.99584 * 8 7 6 43 43 H 0.96998 * 119.99852 * 359.97438 * 9 8 7 44 44 H 1.08995 * 109.58498 * 353.41300 * 15 14 12 45 45 H 1.09003 * 109.58798 * 113.70109 * 15 14 12 46 46 H 1.08998 * 109.49941 * 65.39130 * 16 15 14 47 47 H 1.09008 * 109.49729 * 185.48788 * 16 15 14 48 48 H 1.09009 * 109.34867 * 301.12720 * 17 16 15 49 49 H 0.97002 * 119.99706 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.49875 * 178.74934 * 26 17 16 51 51 H 1.09001 * 109.52161 * 58.66408 * 26 17 16 52 52 H 1.08997 * 109.58946 * 246.15605 * 27 14 12 53 53 H 1.08998 * 109.59100 * 6.44429 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9431 1.3861 1.2492 7 6 3.7077 2.7113 1.2494 8 6 4.5878 2.7921 2.4984 9 7 5.3194 4.0613 2.4990 10 6 6.1624 4.3528 3.5094 11 8 6.3151 3.5640 4.4189 12 6 6.9092 5.6474 3.5097 13 8 6.8512 6.3815 2.5453 14 7 7.6472 5.9993 4.5811 15 6 8.5058 7.1909 4.5399 16 6 9.9292 6.7907 4.9408 17 6 9.8928 6.0852 6.2987 18 6 11.2949 5.7171 6.7105 19 1 11.5531 4.6826 6.8828 20 6 12.2482 6.7009 6.8672 21 7 11.9336 7.9606 6.6578 22 14 13.9864 6.2445 7.3770 23 1 14.8066 5.9896 6.1657 24 1 14.5836 7.3605 8.1535 25 1 13.9505 5.0205 8.2171 26 6 9.0417 4.8174 6.1976 27 6 7.6087 5.1985 5.8123 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.6143 3.4119 -0.0002 32 1 0.4430 2.4100 -0.8908 33 1 0.4423 2.4104 0.8891 34 1 3.6514 0.5576 -1.2493 35 1 2.3164 1.3284 -2.1392 36 1 3.4878 2.3303 -1.2495 37 1 3.6515 0.5576 1.2491 38 1 2.3165 1.3283 2.1392 39 1 2.9991 3.5396 1.2497 40 1 4.3343 2.7695 0.3594 41 1 5.2964 1.9639 2.4978 42 1 3.9616 2.7338 3.3887 43 1 5.1977 4.6916 1.7718 44 1 8.5124 7.6018 3.5304 45 1 8.1267 7.9388 5.2364 46 1 10.3413 6.1140 4.1923 47 1 10.5525 7.6825 5.0082 48 1 9.4600 6.7548 7.0421 49 1 12.6041 8.6527 6.7684 50 1 9.0357 4.3055 7.1599 51 1 9.4596 4.1577 5.4371 52 1 7.1579 5.7829 6.6144 53 1 7.0213 4.2961 5.6431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329749436.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:44 Heat of formation + Delta-G solvation = -57.141200 kcal Electronic energy + Delta-G solvation = -29107.788927 eV Core-core repulsion = 25172.804892 eV Total energy + Delta-G solvation = -3934.984035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.69168 -39.12094 -38.40254 -37.01508 -35.64091 -33.51426 -32.75423 -31.05950 -30.43797 -30.16993 -27.78315 -27.15404 -26.24795 -24.52566 -23.20121 -22.52950 -21.73036 -21.25047 -20.15836 -18.79754 -18.48496 -17.36373 -16.84301 -16.39547 -16.23029 -16.13181 -15.55512 -15.31879 -14.86868 -14.68637 -14.52217 -14.31755 -14.18489 -13.64615 -13.34090 -13.16511 -12.81674 -12.77179 -12.67710 -12.55778 -12.43855 -12.21775 -12.12718 -11.91122 -11.80863 -11.37680 -11.21457 -11.18403 -10.97068 -10.89643 -10.86138 -10.83161 -10.60498 -10.32050 -10.06529 -9.74983 -9.54274 -9.51003 -9.36003 -8.93086 -8.55910 -8.33642 -8.07441 -5.99616 -4.05816 1.60160 1.89556 2.52525 3.30556 3.37429 3.40635 3.41919 3.75402 4.22129 4.30386 4.40145 4.43655 4.51994 4.65970 4.74815 4.91747 4.96067 5.02377 5.20167 5.25254 5.29816 5.32565 5.37271 5.43045 5.48719 5.60063 5.66882 5.68912 5.71582 5.76798 5.90774 5.93600 5.95157 5.98236 6.06408 6.19338 6.23662 6.35895 6.39503 6.40187 6.62677 6.73167 6.83591 7.03127 7.07123 7.19505 7.34073 7.69762 7.76239 7.90515 7.96301 8.08987 8.25697 8.44176 8.97746 9.59061 11.05827 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029220 B = 0.001791 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.004955 B =15630.204813 C =15951.564764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C -0.039 4.039 4 C -0.148 4.148 5 C -0.142 4.142 6 C -0.101 4.101 7 C -0.137 4.137 8 C 0.116 3.884 9 N -0.704 5.704 10 C 0.511 3.489 11 O -0.506 6.506 12 C 0.498 3.502 13 O -0.543 6.543 14 N -0.560 5.560 15 C 0.104 3.896 16 C -0.122 4.122 17 C 0.045 3.955 18 C -0.511 4.511 19 H 0.055 0.945 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.117 4.117 27 C 0.047 3.953 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.412 0.588 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.038 0.962 47 H 0.106 0.894 48 H 0.027 0.973 49 H 0.260 0.740 50 H 0.060 0.940 51 H 0.051 0.949 52 H 0.057 0.943 53 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.174 -11.723 -13.529 28.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.160 4.160 3 C -0.039 4.039 4 C -0.205 4.205 5 C -0.199 4.199 6 C -0.139 4.139 7 C -0.175 4.175 8 C -0.007 4.007 9 N -0.357 5.357 10 C 0.293 3.707 11 O -0.382 6.382 12 C 0.280 3.720 13 O -0.422 6.422 14 N -0.291 5.291 15 C -0.017 4.017 16 C -0.160 4.160 17 C 0.026 3.974 18 C -0.549 4.549 19 H 0.073 0.927 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.719 3.281 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.155 4.155 27 C -0.073 4.073 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.248 0.752 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.124 0.876 48 H 0.045 0.955 49 H 0.070 0.930 50 H 0.079 0.921 51 H 0.069 0.931 52 H 0.075 0.925 53 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.997 -11.715 -13.343 28.269 hybrid contribution 1.044 0.089 0.018 1.048 sum -20.953 -11.626 -13.325 27.418 Atomic orbital electron populations 1.24008 0.96202 1.02064 1.01397 1.22923 0.95869 0.97696 0.99555 1.19672 0.95256 0.93262 0.95696 1.22034 0.98872 0.97759 1.01840 1.21894 0.99261 1.02261 0.96454 1.21481 0.98120 0.96972 0.97342 1.21965 0.98866 0.98978 0.97645 1.21489 0.94865 0.85482 0.98875 1.45819 1.43343 1.21359 1.25227 1.20505 0.79955 0.87944 0.82309 1.90366 1.63550 1.50213 1.34106 1.19834 0.81703 0.86420 0.84065 1.90700 1.64128 1.52811 1.34556 1.48220 1.40565 1.27363 1.12950 1.22086 0.92317 0.85388 1.01873 1.22039 0.91881 1.03470 0.98621 1.18697 0.94380 0.91327 0.92968 1.21216 0.94899 0.93298 1.45506 0.92673 1.24973 0.98707 0.95016 0.95339 1.69839 1.34046 0.99499 1.49711 0.86610 0.84837 0.78044 0.78600 1.20773 1.21268 1.19966 1.21912 0.93103 1.00314 1.00201 1.23307 1.01275 0.98275 0.84491 0.88771 0.87903 0.87498 0.91954 0.92465 0.92300 0.92420 0.92679 0.91881 0.91275 0.91348 0.90673 0.90600 0.90930 0.90977 0.75210 0.90489 0.91666 0.94310 0.87559 0.95503 0.92993 0.92101 0.93063 0.92476 0.84137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.12 13.70 29.01 0.40 -0.72 16 2 C -0.14 -0.83 8.76 -36.03 -0.32 -1.14 16 3 C -0.04 -0.21 0.77 -155.66 -0.12 -0.33 16 4 C -0.15 -0.78 6.77 37.16 0.25 -0.53 16 5 C -0.14 -0.77 8.10 37.16 0.30 -0.46 16 6 C -0.10 -0.57 4.25 -26.74 -0.11 -0.68 16 7 C -0.14 -0.83 4.62 -26.73 -0.12 -0.95 16 8 C 0.12 1.00 5.67 -4.04 -0.02 0.98 16 9 N -0.70 -7.86 5.55 -60.73 -0.34 -8.19 16 10 C 0.51 7.71 7.78 -11.59 -0.09 7.62 16 11 O -0.51 -8.42 13.10 5.49 0.07 -8.35 16 12 C 0.50 8.82 7.74 -11.58 -0.09 8.73 16 13 O -0.54 -10.24 15.94 5.50 0.09 -10.15 16 14 N -0.56 -10.64 2.97 -173.27 -0.52 -11.16 16 15 C 0.10 2.11 6.41 -3.71 -0.02 2.08 16 16 C -0.12 -2.86 5.16 -26.60 -0.14 -2.99 16 17 C 0.04 1.10 2.06 -91.71 -0.19 0.91 16 18 C -0.51 -13.93 8.56 -34.44 -0.29 -14.23 16 19 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 20 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 21 N -0.89 -25.02 11.30 55.43 0.63 -24.40 16 22 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.12 -2.47 5.30 -26.61 -0.14 -2.62 16 27 C 0.05 0.87 6.27 -3.71 -0.02 0.85 16 28 H 0.09 0.46 8.06 -52.48 -0.42 0.04 16 29 H 0.10 0.53 5.69 -52.49 -0.30 0.23 16 30 H 0.11 0.58 8.06 -52.48 -0.42 0.16 16 31 H 0.06 0.32 6.43 -51.93 -0.33 -0.02 16 32 H 0.06 0.29 7.50 -51.93 -0.39 -0.10 16 33 H 0.06 0.31 7.49 -51.93 -0.39 -0.08 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.43 6.43 -51.93 -0.33 0.09 16 40 H 0.08 0.44 6.43 -51.93 -0.33 0.11 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.41 4.10 7.96 -40.82 -0.33 3.77 16 44 H 0.08 1.52 7.05 -51.93 -0.37 1.16 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.11 2.75 6.03 -51.92 -0.31 2.43 16 48 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 49 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 50 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 51 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 52 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 53 H 0.14 2.52 3.78 -56.75 -0.21 2.30 16 LS Contribution 408.06 15.07 6.15 6.15 Total: -1.00 -29.93 408.06 -8.86 -38.78 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -9.09 Total: 3.02 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.83 Total: -1.91 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.23 Total: -43.75 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.16 Total: -18.51 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -29.93 -8.86 -38.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329749436.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.357 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds