Wall clock time and date at job start Tue Mar 31 2020 20:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00234 * 2 1 4 4 C 1.53002 * 109.46934 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.47050 * 240.00407 * 3 2 1 6 6 C 1.52993 * 109.47181 * 119.99969 * 3 2 1 7 7 C 1.52998 * 109.46919 * 180.02562 * 6 3 2 8 8 C 1.53006 * 109.46913 * 180.02562 * 7 6 3 9 9 N 1.46501 * 109.47082 * 180.02562 * 8 7 6 10 10 C 1.34774 * 120.00243 * 180.02562 * 9 8 7 11 11 O 1.21357 * 119.99737 * 359.97438 * 10 9 8 12 12 C 1.49450 * 120.00173 * 179.97438 * 10 9 8 13 13 O 1.21345 * 120.00237 * 353.32917 * 12 10 9 14 14 N 1.34779 * 119.99959 * 173.33642 * 12 10 9 15 15 C 1.46926 * 120.62965 * 173.06654 * 14 12 10 16 16 C 1.53192 * 108.89029 * 233.55576 * 15 14 12 17 17 C 1.53071 * 109.29669 * 305.57921 * 16 15 14 18 18 C 1.50702 * 109.44365 * 181.24072 * 17 16 15 19 19 H 1.08007 * 119.99829 * 239.79782 * 18 17 16 20 20 C 1.37879 * 120.00166 * 59.78883 * 18 17 16 21 21 N 1.31515 * 119.99785 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99970 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47098 * 90.00321 * 22 20 18 24 24 H 1.48500 * 109.46833 * 210.00496 * 22 20 18 25 25 H 1.48499 * 109.47091 * 330.00443 * 22 20 18 26 26 C 1.53039 * 109.66157 * 61.15585 * 17 16 15 27 27 C 1.46927 * 120.62872 * 353.08530 * 14 12 10 28 28 H 1.08010 * 119.99818 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00146 * 359.97438 * 1 2 3 30 30 H 1.08007 * 119.99495 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.46920 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47068 * 300.00244 * 4 3 2 33 33 H 1.09003 * 109.47002 * 59.99794 * 4 3 2 34 34 H 1.08993 * 109.46910 * 299.99663 * 5 3 2 35 35 H 1.08994 * 109.47078 * 59.99992 * 5 3 2 36 36 H 1.09001 * 109.46526 * 179.97438 * 5 3 2 37 37 H 1.09005 * 109.47063 * 60.00575 * 6 3 2 38 38 H 1.08998 * 109.47418 * 300.00214 * 6 3 2 39 39 H 1.09001 * 109.47337 * 60.00375 * 7 6 3 40 40 H 1.09003 * 109.47515 * 299.99965 * 7 6 3 41 41 H 1.08993 * 109.47263 * 59.99970 * 8 7 6 42 42 H 1.09003 * 109.47332 * 299.99584 * 8 7 6 43 43 H 0.96998 * 119.99852 * 359.97438 * 9 8 7 44 44 H 1.08995 * 109.58498 * 353.41300 * 15 14 12 45 45 H 1.09003 * 109.58798 * 113.70109 * 15 14 12 46 46 H 1.08998 * 109.49941 * 65.39130 * 16 15 14 47 47 H 1.09008 * 109.49729 * 185.48788 * 16 15 14 48 48 H 1.09009 * 109.34867 * 301.12720 * 17 16 15 49 49 H 0.97002 * 119.99706 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.49875 * 178.74934 * 26 17 16 51 51 H 1.09001 * 109.52161 * 58.66408 * 26 17 16 52 52 H 1.08997 * 109.58946 * 246.15605 * 27 14 12 53 53 H 1.08998 * 109.59100 * 6.44429 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9431 1.3861 1.2492 7 6 3.7077 2.7113 1.2494 8 6 4.5878 2.7921 2.4984 9 7 5.3194 4.0613 2.4990 10 6 6.1624 4.3528 3.5094 11 8 6.3151 3.5640 4.4189 12 6 6.9092 5.6474 3.5097 13 8 6.8512 6.3815 2.5453 14 7 7.6472 5.9993 4.5811 15 6 8.5058 7.1909 4.5399 16 6 9.9292 6.7907 4.9408 17 6 9.8928 6.0852 6.2987 18 6 11.2949 5.7171 6.7105 19 1 11.5531 4.6826 6.8828 20 6 12.2482 6.7009 6.8672 21 7 11.9336 7.9606 6.6578 22 14 13.9864 6.2445 7.3770 23 1 14.8066 5.9896 6.1657 24 1 14.5836 7.3605 8.1535 25 1 13.9505 5.0205 8.2171 26 6 9.0417 4.8174 6.1976 27 6 7.6087 5.1985 5.8123 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.6143 3.4119 -0.0002 32 1 0.4430 2.4100 -0.8908 33 1 0.4423 2.4104 0.8891 34 1 3.6514 0.5576 -1.2493 35 1 2.3164 1.3284 -2.1392 36 1 3.4878 2.3303 -1.2495 37 1 3.6515 0.5576 1.2491 38 1 2.3165 1.3283 2.1392 39 1 2.9991 3.5396 1.2497 40 1 4.3343 2.7695 0.3594 41 1 5.2964 1.9639 2.4978 42 1 3.9616 2.7338 3.3887 43 1 5.1977 4.6916 1.7718 44 1 8.5124 7.6018 3.5304 45 1 8.1267 7.9388 5.2364 46 1 10.3413 6.1140 4.1923 47 1 10.5525 7.6825 5.0082 48 1 9.4600 6.7548 7.0421 49 1 12.6041 8.6527 6.7684 50 1 9.0357 4.3055 7.1599 51 1 9.4596 4.1577 5.4371 52 1 7.1579 5.7829 6.6144 53 1 7.0213 4.2961 5.6431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329749436.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:43 Heat of formation + Delta-G solvation = -73.736390 kcal Electronic energy + Delta-G solvation = -29108.508548 eV Core-core repulsion = 25172.804892 eV Total energy + Delta-G solvation = -3935.703657 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.00642 -39.98556 -39.35277 -38.60240 -36.61538 -35.29893 -33.44244 -32.92872 -31.86394 -30.98873 -28.46397 -28.18266 -27.49297 -25.78552 -24.41981 -23.97947 -23.09172 -21.98368 -21.37085 -20.38401 -18.91896 -18.69487 -18.50276 -17.96011 -17.20718 -16.93398 -16.59988 -16.50851 -16.32346 -15.85877 -15.57571 -15.21380 -15.06296 -14.89264 -14.66462 -14.57911 -14.47370 -14.02787 -13.80441 -13.52735 -13.22229 -13.08111 -13.02406 -12.98095 -12.82431 -12.61005 -12.55291 -12.38448 -12.35615 -12.11805 -11.93853 -11.81703 -11.67879 -11.45057 -11.35857 -11.28894 -11.18614 -10.87226 -10.45149 -10.33157 -10.17522 -9.99220 -9.69022 -8.08178 -6.22123 0.30173 1.29543 1.41172 1.42517 1.48529 1.52176 2.09636 2.43609 2.49806 3.17893 3.26678 3.73762 3.84313 3.94461 4.13445 4.14637 4.27177 4.30581 4.35387 4.43520 4.44291 4.52037 4.55152 4.60308 4.66956 4.71637 4.73432 4.82374 4.87068 4.92499 4.95182 4.96772 5.07762 5.11959 5.16740 5.19697 5.21211 5.26828 5.30760 5.36570 5.43311 5.46550 5.51771 5.54957 5.62898 5.82339 5.96088 5.98146 6.00877 6.09328 6.31361 6.37988 6.69714 6.87908 6.91945 7.45749 8.95311 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029220 B = 0.001791 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.004955 B =15630.204813 C =15951.564764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.037 4.037 4 C -0.148 4.148 5 C -0.141 4.141 6 C -0.098 4.098 7 C -0.127 4.127 8 C 0.114 3.886 9 N -0.683 5.683 10 C 0.514 3.486 11 O -0.523 6.523 12 C 0.497 3.503 13 O -0.554 6.554 14 N -0.570 5.570 15 C 0.115 3.885 16 C -0.111 4.111 17 C 0.042 3.958 18 C -0.534 4.534 19 H 0.050 0.950 20 C 0.015 3.985 21 N -0.914 5.914 22 Si 0.952 3.048 23 H -0.278 1.278 24 H -0.282 1.282 25 H -0.270 1.270 26 C -0.109 4.109 27 C 0.057 3.943 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.420 0.580 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.024 0.976 47 H 0.080 0.920 48 H 0.003 0.997 49 H 0.261 0.739 50 H 0.066 0.934 51 H 0.041 0.959 52 H 0.066 0.934 53 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.332 -12.723 -14.238 30.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.169 4.169 3 C -0.037 4.037 4 C -0.205 4.205 5 C -0.199 4.199 6 C -0.136 4.136 7 C -0.165 4.165 8 C -0.008 4.008 9 N -0.336 5.336 10 C 0.295 3.705 11 O -0.401 6.401 12 C 0.280 3.720 13 O -0.434 6.434 14 N -0.301 5.301 15 C -0.007 4.007 16 C -0.150 4.150 17 C 0.024 3.976 18 C -0.572 4.572 19 H 0.068 0.932 20 C -0.184 4.184 21 N -0.554 5.554 22 Si 0.778 3.222 23 H -0.204 1.204 24 H -0.208 1.208 25 H -0.194 1.194 26 C -0.147 4.147 27 C -0.064 4.064 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.257 0.743 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.043 0.957 47 H 0.098 0.902 48 H 0.021 0.979 49 H 0.070 0.930 50 H 0.085 0.915 51 H 0.060 0.940 52 H 0.084 0.916 53 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -23.192 -12.728 -14.090 29.973 hybrid contribution 1.349 0.380 0.172 1.412 sum -21.842 -12.349 -13.918 28.693 Atomic orbital electron populations 1.24129 0.96283 1.02517 1.01071 1.23019 0.96071 0.97960 0.99866 1.19654 0.95247 0.93257 0.95569 1.22033 0.98853 0.97745 1.01849 1.21895 0.99224 1.02389 0.96351 1.21444 0.98059 0.96661 0.97431 1.21909 0.98606 0.99540 0.96428 1.21695 0.94858 0.83863 1.00358 1.45809 1.41620 1.22179 1.23948 1.19971 0.80588 0.86685 0.83216 1.90332 1.64466 1.50245 1.35106 1.20319 0.81289 0.87206 0.83168 1.90688 1.64463 1.53476 1.34745 1.48212 1.41022 1.27148 1.13720 1.21795 0.90659 0.86151 1.02046 1.21788 0.93706 1.01731 0.97726 1.18670 0.93814 0.92510 0.92651 1.21568 0.96518 0.93196 1.45938 0.93157 1.25700 1.02339 0.95004 0.95376 1.69963 1.35109 1.00195 1.50115 0.85650 0.80376 0.77898 0.78279 1.20427 1.20802 1.19447 1.21777 0.94242 0.98378 1.00318 1.23295 0.99435 0.99016 0.84623 0.88279 0.87609 0.87357 0.91628 0.92449 0.92349 0.92491 0.92845 0.91572 0.91254 0.91418 0.89849 0.90024 0.91145 0.90730 0.74266 0.90074 0.91229 0.95720 0.90207 0.97862 0.92953 0.91513 0.94013 0.91602 0.82721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 13.70 67.78 0.93 -1.07 16 2 C -0.15 -1.54 8.76 25.64 0.22 -1.32 16 3 C -0.04 -0.34 0.77 -52.93 -0.04 -0.38 16 4 C -0.15 -1.28 6.77 71.98 0.49 -0.79 16 5 C -0.14 -1.29 8.10 71.98 0.58 -0.71 16 6 C -0.10 -0.91 4.25 30.59 0.13 -0.78 16 7 C -0.13 -1.21 4.62 30.60 0.14 -1.07 16 8 C 0.11 1.71 5.67 86.38 0.49 2.20 16 9 N -0.68 -13.65 5.55 -464.40 -2.58 -16.23 16 10 C 0.51 14.57 7.78 87.27 0.68 15.25 16 11 O -0.52 -16.45 13.10 -3.27 -0.04 -16.50 16 12 C 0.50 16.95 7.74 87.27 0.68 17.62 16 13 O -0.55 -20.12 15.94 -3.23 -0.05 -20.17 16 14 N -0.57 -21.23 2.97 -820.48 -2.44 -23.67 16 15 C 0.12 4.66 6.41 86.36 0.55 5.22 16 16 C -0.11 -5.33 5.16 30.68 0.16 -5.17 16 17 C 0.04 2.11 2.06 -11.50 -0.02 2.09 16 18 C -0.53 -29.59 8.56 25.60 0.22 -29.37 16 19 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 20 C 0.01 0.80 5.30 84.66 0.45 1.25 16 21 N -0.91 -52.17 11.30 21.45 0.24 -51.92 16 22 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 C -0.11 -4.60 5.30 30.67 0.16 -4.44 16 27 C 0.06 2.05 6.27 86.37 0.54 2.59 16 28 H 0.10 0.84 8.06 -2.91 -0.02 0.82 16 29 H 0.11 0.95 5.69 -2.91 -0.02 0.94 16 30 H 0.11 1.05 8.06 -2.91 -0.02 1.02 16 31 H 0.06 0.52 6.43 -2.39 -0.02 0.50 16 32 H 0.06 0.50 7.50 -2.39 -0.02 0.48 16 33 H 0.06 0.51 7.49 -2.39 -0.02 0.50 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.07 0.55 6.43 -2.39 -0.02 0.54 16 37 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.70 6.43 -2.39 -0.02 0.69 16 40 H 0.08 0.73 6.43 -2.39 -0.02 0.71 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.42 7.27 7.96 -92.71 -0.74 6.53 16 44 H 0.08 3.20 7.05 -2.39 -0.02 3.18 16 45 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 46 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.08 4.26 6.03 -2.38 -0.01 4.25 16 48 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 49 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 50 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 51 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 52 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 53 H 0.16 5.30 3.78 -78.70 -0.30 5.01 16 Total: -1.00 -63.61 408.06 3.38 -60.22 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -0.13 Total: 21.35 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 6.36 Total: 1.12 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -4.77 Total: -91.82 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.09 Total: -36.67 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -63.61 3.38 -60.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329749436.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.515 kcal (2) G-P(sol) polarization free energy of solvation -63.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds