Wall clock time and date at job start Tue Mar 31 2020 19:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46971 * 2 1 4 4 C 1.53005 * 109.46836 * 119.99886 * 2 1 3 5 5 C 1.53000 * 109.46858 * 174.20191 * 4 2 1 6 6 C 1.53353 * 109.41530 * 294.28146 * 5 4 2 7 7 C 1.53188 * 109.15042 * 178.67623 * 6 5 4 8 8 N 1.46927 * 108.89201 * 54.57805 * 7 6 5 9 9 C 1.34780 * 120.63168 * 126.34465 * 8 7 6 10 10 O 1.21350 * 119.99718 * 355.09559 * 9 8 7 11 11 C 1.49453 * 119.99895 * 175.09487 * 9 8 7 12 12 O 1.21342 * 119.99871 * 275.45043 * 11 9 8 13 13 N 1.34777 * 119.99605 * 95.45759 * 11 9 8 14 14 C 1.46503 * 119.99562 * 184.99818 * 13 11 9 15 15 C 1.53001 * 109.46682 * 175.02983 * 14 13 11 16 16 C 1.50695 * 115.55183 * 65.11572 * 15 14 13 17 17 H 1.08007 * 120.00062 * 273.96419 * 16 15 14 18 18 C 1.37878 * 120.00387 * 93.96455 * 16 15 14 19 19 N 1.31509 * 119.99867 * 4.69111 * 18 16 15 20 20 Si 1.86803 * 120.00093 * 184.69634 * 18 16 15 21 21 H 1.48505 * 109.47149 * 89.99689 * 20 18 16 22 22 H 1.48501 * 109.47081 * 209.99607 * 20 18 16 23 23 H 1.48498 * 109.47150 * 329.99801 * 20 18 16 24 24 C 1.53002 * 117.49973 * 279.44142 * 15 14 13 25 25 C 1.53001 * 117.49766 * 210.77893 * 15 14 13 26 26 C 1.46929 * 118.73843 * 306.32098 * 8 7 6 27 27 C 1.53036 * 109.45984 * 174.16020 * 5 4 2 28 28 H 1.08999 * 109.47235 * 304.96139 * 1 2 3 29 29 H 1.09004 * 109.46747 * 64.95899 * 1 2 3 30 30 H 1.08997 * 109.47104 * 184.95498 * 1 2 3 31 31 H 1.08995 * 109.47067 * 239.99575 * 2 1 3 32 32 H 1.09001 * 109.46946 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47085 * 299.99479 * 3 2 1 34 34 H 1.08993 * 109.47063 * 59.99951 * 3 2 1 35 35 H 1.08992 * 109.47009 * 54.20137 * 4 2 1 36 36 H 1.08999 * 109.46825 * 294.19966 * 4 2 1 37 37 H 1.08996 * 109.46461 * 54.17866 * 5 4 2 38 38 H 1.09003 * 109.68738 * 58.71371 * 6 5 4 39 39 H 1.09002 * 109.48024 * 298.51326 * 6 5 4 40 40 H 1.09006 * 109.58934 * 294.72010 * 7 6 5 41 41 H 1.08994 * 109.59480 * 174.43710 * 7 6 5 42 42 H 0.96996 * 119.99861 * 4.99348 * 13 11 9 43 43 H 1.08993 * 109.46874 * 295.02693 * 14 13 11 44 44 H 1.08993 * 109.47105 * 55.03067 * 14 13 11 45 45 H 0.96998 * 120.00177 * 184.99987 * 19 18 16 46 46 H 1.09001 * 117.49688 * 0.02562 * 24 15 14 47 47 H 1.08998 * 117.49608 * 145.02608 * 24 15 14 48 48 H 1.08992 * 117.50170 * 214.97874 * 25 15 14 49 49 H 1.09007 * 117.49697 * 359.97438 * 25 15 14 50 50 H 1.08998 * 109.58467 * 173.39652 * 26 8 7 51 51 H 1.08995 * 109.58561 * 293.68015 * 26 8 7 52 52 H 1.08995 * 109.50105 * 61.43072 * 27 5 4 53 53 H 1.09004 * 109.51936 * 301.35136 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5630 -0.8487 1.1786 6 6 3.9439 -1.7694 0.0129 7 6 5.4703 -1.8663 -0.0729 8 7 5.9939 -2.2937 1.2317 9 6 6.8071 -3.3642 1.3281 10 8 7.0421 -4.0379 0.3465 11 6 7.4194 -3.7215 2.6438 12 8 8.4459 -3.1825 3.0016 13 7 6.8312 -4.6424 3.4328 14 6 7.3690 -4.9136 4.7683 15 6 6.4533 -5.8999 5.4961 16 6 6.3741 -7.2790 4.8939 17 1 5.6703 -7.4821 4.1002 18 6 7.2000 -8.2816 5.3561 19 7 7.9912 -8.0606 6.3831 20 14 7.1953 -9.9538 4.5235 21 1 8.2032 -9.9665 3.4329 22 1 7.5301 -11.0035 5.5191 23 1 5.8491 -10.2206 3.9564 24 6 5.1873 -5.3397 6.1476 25 6 6.3631 -5.7880 7.0193 26 6 5.6146 -1.5315 2.4292 27 6 4.0868 -1.4376 2.4904 28 1 -0.3634 0.5889 0.8422 29 1 -0.3633 0.4350 -0.9311 30 1 -0.3633 -1.0238 0.0888 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.5943 -1.7145 1.3027 36 1 1.7639 -0.1509 2.1362 37 1 4.0030 0.1360 1.0213 38 1 3.5523 -1.3626 -0.9195 39 1 3.5254 -2.7616 0.1816 40 1 5.8845 -0.8917 -0.3314 41 1 5.7481 -2.5949 -0.8345 42 1 6.0520 -5.1256 3.1163 43 1 8.3667 -5.3429 4.6779 44 1 7.4236 -3.9834 5.3337 45 1 8.6239 -8.7405 6.6630 46 1 5.0066 -4.2686 6.0573 47 1 4.2973 -5.9689 6.1409 48 1 6.2460 -6.7117 7.5858 49 1 6.9565 -5.0119 7.5030 50 1 5.9853 -2.0406 3.3189 51 1 6.0425 -0.5305 2.3760 52 1 3.6667 -2.4328 2.6358 53 1 3.7948 -0.7945 3.3206 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343810058.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:35 Heat of formation + Delta-G solvation = -89.651896 kcal Electronic energy + Delta-G solvation = -30219.658972 eV Core-core repulsion = 26283.265167 eV Total energy + Delta-G solvation = -3936.393805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.98109 -40.21295 -39.14977 -38.43598 -37.03793 -35.23244 -33.92859 -33.77875 -32.23864 -29.25628 -28.35717 -27.92788 -27.38918 -25.45444 -24.57670 -23.38246 -22.83310 -21.71452 -21.38157 -20.52319 -20.21905 -19.09822 -18.15808 -17.94745 -17.33253 -16.70509 -16.31250 -16.10784 -16.07769 -15.83260 -15.48506 -15.31126 -15.10610 -14.87624 -14.77503 -14.47732 -14.33952 -13.98231 -13.81200 -13.47934 -13.46383 -13.29959 -12.99160 -12.96581 -12.83145 -12.73410 -12.58902 -12.38910 -12.26356 -12.18340 -11.96789 -11.94985 -11.58712 -11.39469 -11.23174 -11.14890 -11.03861 -11.03095 -10.74847 -10.41887 -10.18997 -9.94648 -9.87310 -8.12288 -6.25474 0.95890 1.05111 1.39423 1.43227 1.48886 1.49675 2.39504 2.43962 3.14846 3.29211 3.59629 3.68589 3.76882 3.82745 4.06094 4.17652 4.18361 4.21258 4.33156 4.38130 4.41670 4.52843 4.54383 4.62524 4.68967 4.74495 4.77935 4.81067 4.86573 4.89215 4.91484 4.97382 5.01619 5.06328 5.10846 5.15329 5.17497 5.21715 5.25666 5.31878 5.33623 5.38551 5.44897 5.47992 5.57951 5.63615 5.67745 5.73302 5.79147 5.95522 6.32020 6.35274 6.62980 6.81723 6.86606 7.44131 8.93605 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.002710 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.711059 B =10329.912565 C =10746.096848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.105 4.105 5 C -0.084 4.084 6 C -0.122 4.122 7 C 0.104 3.896 8 N -0.582 5.582 9 C 0.517 3.483 10 O -0.552 6.552 11 C 0.510 3.490 12 O -0.560 6.560 13 N -0.675 5.675 14 C 0.174 3.826 15 C -0.007 4.007 16 C -0.507 4.507 17 H 0.058 0.942 18 C 0.027 3.973 19 N -0.902 5.902 20 Si 0.941 3.059 21 H -0.285 1.285 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.175 4.175 25 C -0.141 4.141 26 C 0.100 3.900 27 C -0.123 4.123 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.412 0.588 43 H 0.031 0.969 44 H 0.061 0.939 45 H 0.259 0.741 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.067 0.933 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.094 0.906 52 H 0.061 0.939 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.193 19.994 -10.605 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.142 4.142 5 C -0.102 4.102 6 C -0.160 4.160 7 C -0.017 4.017 8 N -0.316 5.316 9 C 0.300 3.700 10 O -0.430 6.430 11 C 0.290 3.710 12 O -0.439 6.439 13 N -0.325 5.325 14 C 0.051 3.949 15 C -0.007 4.007 16 C -0.545 4.545 17 H 0.077 0.923 18 C -0.174 4.174 19 N -0.540 5.540 20 Si 0.768 3.232 21 H -0.211 1.211 22 H -0.212 1.212 23 H -0.189 1.189 24 C -0.213 4.213 25 C -0.179 4.179 26 C -0.021 4.021 27 C -0.161 4.161 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.248 0.752 43 H 0.049 0.951 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.114 0.886 47 H 0.098 0.902 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.112 0.888 52 H 0.080 0.920 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.279 19.914 -10.682 26.731 hybrid contribution 0.417 -1.711 -0.254 1.780 sum -13.863 18.203 -10.935 25.359 Atomic orbital electron populations 1.21851 0.95450 1.01564 1.01751 1.21164 0.95508 0.96596 0.98410 1.21887 1.01379 0.95587 1.01651 1.21629 0.93909 1.00420 0.98245 1.21256 0.96228 0.99335 0.93371 1.22056 0.92922 1.00495 1.00501 1.21940 0.95371 1.01271 0.83120 1.48208 1.44905 1.27507 1.10956 1.20245 0.79336 0.81775 0.88679 1.90757 1.61415 1.52390 1.38400 1.20356 0.85032 0.80851 0.84721 1.90751 1.24275 1.55683 1.73155 1.45963 1.32089 1.38165 1.16280 1.20868 0.96424 0.96790 0.80840 1.19034 0.95513 0.93459 0.92722 1.20682 1.21126 0.93511 1.19151 0.92346 1.25621 0.95765 1.01333 0.94652 1.70101 1.22850 1.35893 1.25143 0.85812 0.78571 0.80617 0.78209 1.21137 1.21163 1.18918 1.23049 0.92524 0.99611 1.06070 1.22353 1.01079 1.00340 0.94135 1.22047 0.97469 0.97045 0.85583 1.21964 0.92320 1.02507 0.99357 0.92735 0.92644 0.93051 0.90959 0.92064 0.92868 0.92782 0.92505 0.91334 0.89318 0.88338 0.92459 0.88953 0.90397 0.75193 0.95104 0.92110 0.93168 0.88616 0.90181 0.91484 0.90807 0.91259 0.88826 0.91977 0.88407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.19 71.98 0.66 -0.77 16 2 C -0.10 -0.91 2.80 -10.79 -0.03 -0.94 16 3 C -0.15 -1.24 8.97 71.98 0.65 -0.59 16 4 C -0.10 -1.07 4.13 30.60 0.13 -0.94 16 5 C -0.08 -0.93 2.04 -10.66 -0.02 -0.95 16 6 C -0.12 -1.64 5.19 30.78 0.16 -1.48 16 7 C 0.10 1.92 6.43 86.36 0.56 2.47 16 8 N -0.58 -14.08 2.97 -820.49 -2.44 -16.52 16 9 C 0.52 17.59 7.54 87.27 0.66 18.24 16 10 O -0.55 -22.05 16.51 -3.25 -0.05 -22.10 16 11 C 0.51 19.53 5.62 87.27 0.49 20.02 16 12 O -0.56 -24.76 17.11 -3.22 -0.06 -24.82 16 13 N -0.67 -25.65 5.48 -464.42 -2.54 -28.19 16 14 C 0.17 7.48 5.51 86.38 0.48 7.96 16 15 C -0.01 -0.29 1.64 -52.93 -0.09 -0.38 16 16 C -0.51 -25.90 8.64 25.60 0.22 -25.68 16 17 H 0.06 2.93 7.82 -2.91 -0.02 2.91 16 18 C 0.03 1.45 5.41 84.66 0.46 1.91 16 19 N -0.90 -50.34 11.86 21.45 0.25 -50.09 16 20 Si 0.94 43.04 29.54 68.60 2.03 45.07 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 24 C -0.18 -6.58 9.96 30.62 0.30 -6.27 16 25 C -0.14 -6.19 8.84 30.62 0.27 -5.92 16 26 C 0.10 1.91 6.32 86.36 0.55 2.45 16 27 C -0.12 -1.72 5.36 30.67 0.16 -1.55 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.68 6.32 -2.39 -0.02 0.66 16 32 H 0.06 0.48 6.47 -2.39 -0.02 0.46 16 33 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 0.82 6.34 -2.39 -0.02 0.81 16 38 H 0.10 0.98 6.43 -2.39 -0.02 0.96 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.08 1.75 7.00 -2.39 -0.02 1.73 16 42 H 0.41 14.77 8.32 -92.71 -0.77 14.00 16 43 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.06 2.42 8.09 -2.39 -0.02 2.41 16 45 H 0.26 14.00 8.32 -92.71 -0.77 13.23 16 46 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 47 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 48 H 0.07 3.31 7.59 -2.39 -0.02 3.29 16 49 H 0.07 3.02 8.14 -2.38 -0.02 3.00 16 50 H 0.07 1.59 6.37 -2.39 -0.02 1.58 16 51 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 53 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -65.76 417.73 2.90 -62.86 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.11 Total: 26.21 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 5.60 Total: 7.58 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -4.73 Total: -94.79 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -0.11 Total: -46.92 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -65.76 2.90 -62.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343810058.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.790 kcal (2) G-P(sol) polarization free energy of solvation -65.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds