Wall clock time and date at job start Tue Mar 31 2020 20:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46965 * 2 1 4 4 C 1.52998 * 109.47379 * 240.00069 * 2 1 3 5 5 C 1.52999 * 109.47246 * 120.00114 * 2 1 3 6 6 C 1.52997 * 109.47232 * 60.00049 * 5 2 1 7 7 H 1.08995 * 115.56578 * 29.31282 * 6 5 2 8 8 C 1.53003 * 117.49892 * 243.62240 * 6 5 2 9 9 C 1.52999 * 117.49809 * 175.00074 * 6 5 2 10 10 H 1.09002 * 117.49905 * 359.97438 * 9 6 5 11 11 N 1.46497 * 117.50105 * 214.97782 * 9 6 5 12 12 C 1.34781 * 120.00001 * 154.99997 * 11 9 6 13 13 O 1.21344 * 120.00065 * 0.02562 * 12 11 9 14 14 C 1.49451 * 119.99747 * 180.02562 * 12 11 9 15 15 O 1.21347 * 119.99995 * 353.60223 * 14 12 11 16 16 N 1.34776 * 120.00019 * 173.59957 * 14 12 11 17 17 C 1.46930 * 120.62905 * 352.93349 * 16 14 12 18 18 C 1.53189 * 108.77215 * 126.37027 * 17 16 14 19 19 C 1.53036 * 109.34101 * 54.61973 * 18 17 16 20 20 C 1.53042 * 109.53944 * 298.68053 * 19 18 17 21 21 H 1.08999 * 109.49880 * 301.34790 * 20 19 18 22 22 C 1.50699 * 109.49538 * 181.28096 * 20 19 18 23 23 H 1.08001 * 120.00206 * 0.06883 * 22 20 19 24 24 C 1.37877 * 119.99604 * 180.33791 * 22 20 19 25 25 N 1.31510 * 120.00463 * 359.73137 * 24 22 20 26 26 Si 1.86803 * 119.99893 * 179.72740 * 24 22 20 27 27 H 1.48502 * 109.47201 * 90.00101 * 26 24 22 28 28 H 1.48497 * 109.47350 * 210.00658 * 26 24 22 29 29 H 1.48506 * 109.47040 * 330.00506 * 26 24 22 30 30 C 1.46918 * 120.63286 * 172.91451 * 16 14 12 31 31 H 1.08996 * 109.47219 * 299.99837 * 1 2 3 32 32 H 1.08997 * 109.47375 * 60.00219 * 1 2 3 33 33 H 1.09010 * 109.46726 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47449 * 179.97438 * 3 2 1 35 35 H 1.09010 * 109.47036 * 299.99829 * 3 2 1 36 36 H 1.09003 * 109.47491 * 59.99591 * 3 2 1 37 37 H 1.09008 * 109.47150 * 300.00201 * 4 2 1 38 38 H 1.08997 * 109.47102 * 59.99544 * 4 2 1 39 39 H 1.08996 * 109.47346 * 180.02562 * 4 2 1 40 40 H 1.09003 * 109.46955 * 299.99794 * 5 2 1 41 41 H 1.08998 * 109.47367 * 180.02562 * 5 2 1 42 42 H 1.09000 * 117.49552 * 145.02001 * 8 6 5 43 43 H 1.09005 * 117.49480 * 0.02562 * 8 6 5 44 44 H 0.96998 * 119.99858 * 335.00393 * 11 9 6 45 45 H 1.08997 * 109.58855 * 246.16070 * 17 16 14 46 46 H 1.09007 * 109.58331 * 6.58636 * 17 16 14 47 47 H 1.09003 * 109.49707 * 174.59096 * 18 17 16 48 48 H 1.09004 * 109.49675 * 294.64955 * 18 17 16 49 49 H 1.09004 * 109.48584 * 178.64417 * 19 18 17 50 50 H 1.08995 * 109.43064 * 58.68904 * 19 18 17 51 51 H 0.96997 * 120.00693 * 179.97438 * 25 24 22 52 52 H 1.09003 * 109.59205 * 113.84262 * 30 16 14 53 53 H 1.09003 * 109.70642 * 353.48557 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 -2.1637 1.2492 7 1 1.3622 -2.6033 0.2660 8 6 0.5862 -2.5793 2.3793 9 6 2.0286 -3.0892 2.3609 10 1 2.7202 -2.6706 3.0921 11 7 2.2436 -4.4983 2.0225 12 6 3.1167 -5.2370 2.7357 13 8 3.7242 -4.7351 3.6585 14 6 3.3364 -6.6743 2.3900 15 8 2.6473 -7.2074 1.5455 16 7 4.3001 -7.3783 3.0163 17 6 5.2422 -6.7124 3.9262 18 6 5.2216 -7.4384 5.2750 19 6 5.5059 -8.9258 5.0543 20 6 4.4167 -9.5285 4.1639 21 1 3.4438 -9.3914 4.6359 22 6 4.6804 -10.9999 3.9730 23 1 5.5382 -11.4600 4.4408 24 6 3.8294 -11.7576 3.1967 25 7 2.7848 -11.1975 2.6270 26 14 4.1603 -13.5800 2.9537 27 1 3.4755 -14.3539 4.0202 28 1 3.6464 -14.0039 1.6266 29 1 5.6225 -13.8309 3.0215 30 6 4.4283 -8.8261 2.8026 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2074 -2.1392 39 1 3.1301 -0.7216 -1.2490 40 1 1.6767 -0.2074 2.1392 41 1 3.1300 -0.7209 1.2495 42 1 -0.2028 -3.2922 2.1395 43 1 0.3281 -1.8249 3.1226 44 1 1.7578 -4.8995 1.2851 45 1 6.2468 -6.7520 3.5051 46 1 4.9429 -5.6735 4.0658 47 1 5.9850 -7.0150 5.9277 48 1 4.2414 -7.3199 5.7370 49 1 5.5156 -9.4406 6.0150 50 1 6.4758 -9.0417 4.5706 51 1 2.1863 -11.7304 2.0805 52 1 5.3665 -9.0383 2.2899 53 1 3.5935 -9.1840 2.1998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347651589.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:27 Heat of formation + Delta-G solvation = -70.980898 kcal Electronic energy + Delta-G solvation = -29737.481059 eV Core-core repulsion = 25801.896889 eV Total energy + Delta-G solvation = -3935.584170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.99406 -40.25498 -39.30828 -38.55222 -37.26411 -35.29924 -34.03933 -33.41177 -31.58082 -28.50510 -28.10849 -28.03823 -27.61608 -26.83819 -24.81796 -23.52960 -22.59601 -22.02225 -21.66809 -20.42631 -19.51340 -18.88374 -18.23743 -18.01280 -17.30214 -16.77613 -16.52171 -16.37821 -15.54819 -15.48278 -15.42160 -15.33027 -15.25241 -14.83316 -14.59325 -14.46255 -14.17688 -14.12401 -13.85730 -13.49601 -13.23910 -13.13566 -12.97349 -12.88916 -12.61714 -12.54762 -12.50166 -12.48556 -12.30433 -12.28502 -12.17090 -11.72776 -11.66200 -11.59439 -11.45452 -11.32205 -11.18382 -10.99839 -10.90640 -10.55523 -10.06662 -9.81571 -9.55979 -8.13319 -6.29797 0.30014 1.28479 1.41740 1.42069 1.52750 2.08510 2.40167 2.52155 2.88833 3.14618 3.25865 3.61070 3.78269 3.91386 4.07030 4.09940 4.14495 4.18295 4.22289 4.32933 4.45912 4.53906 4.61344 4.72654 4.73553 4.78470 4.80805 4.83043 4.91055 4.96357 4.99960 5.02170 5.03849 5.05692 5.15195 5.16310 5.19052 5.23049 5.28743 5.29699 5.34763 5.39882 5.48134 5.53883 5.56311 5.58061 5.59354 5.82993 5.92487 5.98588 6.28467 6.42687 6.72231 6.82303 6.95874 7.40058 8.90872 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021585 B = 0.002205 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.910373 B =12696.988115 C =13416.658131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.076 4.076 6 C -0.135 4.135 7 H 0.114 0.886 8 C -0.172 4.172 9 C 0.053 3.947 10 H 0.136 0.864 11 N -0.660 5.660 12 C 0.525 3.475 13 O -0.518 6.518 14 C 0.486 3.514 15 O -0.559 6.559 16 N -0.574 5.574 17 C 0.049 3.951 18 C -0.120 4.120 19 C -0.107 4.107 20 C 0.038 3.962 21 H -0.012 1.012 22 C -0.534 4.534 23 H 0.063 0.937 24 C 0.010 3.990 25 N -0.916 5.916 26 Si 0.960 3.040 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.263 1.263 30 C 0.121 3.879 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.120 0.880 44 H 0.417 0.583 45 H 0.071 0.929 46 H 0.156 0.844 47 H 0.098 0.902 48 H 0.045 0.955 49 H 0.054 0.946 50 H 0.057 0.943 51 H 0.262 0.738 52 H 0.044 0.956 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 25.677 -3.603 26.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.113 4.113 6 C -0.154 4.154 7 H 0.132 0.868 8 C -0.211 4.211 9 C -0.052 4.052 10 H 0.154 0.846 11 N -0.309 5.309 12 C 0.307 3.693 13 O -0.397 6.397 14 C 0.268 3.732 15 O -0.439 6.439 16 N -0.305 5.305 17 C -0.071 4.071 18 C -0.158 4.158 19 C -0.144 4.144 20 C 0.019 3.981 21 H 0.006 0.994 22 C -0.573 4.573 23 H 0.081 0.919 24 C -0.189 4.189 25 N -0.555 5.555 26 Si 0.785 3.215 27 H -0.201 1.201 28 H -0.211 1.211 29 H -0.187 1.187 30 C -0.001 4.001 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.138 0.862 44 H 0.254 0.746 45 H 0.090 0.910 46 H 0.172 0.828 47 H 0.117 0.883 48 H 0.064 0.936 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.071 0.929 52 H 0.063 0.937 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.984 25.702 -3.505 26.016 hybrid contribution -0.359 -1.838 -0.645 1.981 sum -2.343 23.864 -4.150 24.335 Atomic orbital electron populations 1.21867 0.94163 1.01918 1.01714 1.20503 0.95996 0.95426 0.94609 1.21863 1.00952 0.94951 1.02059 1.21966 1.00864 1.00304 0.97211 1.21263 1.00411 0.91293 0.98367 1.22995 1.01827 0.95887 0.94705 0.86848 1.23723 0.92294 1.03419 1.01621 1.22049 0.99933 0.79435 1.03738 0.84616 1.45176 1.41211 1.10746 1.33808 1.19918 0.80392 0.86326 0.82662 1.90260 1.47447 1.72180 1.29791 1.20440 0.81845 0.88158 0.82708 1.90727 1.47980 1.71948 1.33220 1.48462 1.29571 1.09605 1.42830 1.23335 0.92622 1.02083 0.89103 1.21823 1.01869 0.95334 0.96811 1.21560 0.98590 0.95030 0.99252 1.18916 0.93820 0.93944 0.91404 0.99354 1.21485 1.10898 0.94049 1.30852 0.91860 1.25900 0.94671 1.03119 0.95256 1.70045 1.15033 1.37406 1.32981 0.85520 0.78821 0.79845 0.77272 1.20133 1.21148 1.18709 1.21955 1.01305 0.75825 1.00998 0.92350 0.92853 0.92621 0.92758 0.92443 0.92224 0.92706 0.92501 0.92976 0.90531 0.91530 0.88299 0.86229 0.74604 0.91037 0.82777 0.88316 0.93580 0.92753 0.92398 0.92929 0.93745 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.23 71.98 0.59 -0.84 16 2 C -0.07 -0.70 0.80 -52.18 -0.04 -0.74 16 3 C -0.14 -1.36 8.47 71.98 0.61 -0.75 16 4 C -0.15 -1.76 8.23 71.98 0.59 -1.17 16 5 C -0.08 -0.88 4.55 30.59 0.14 -0.74 16 6 C -0.14 -1.87 4.18 -10.79 -0.05 -1.91 16 7 H 0.11 1.60 6.06 -2.39 -0.01 1.59 16 8 C -0.17 -2.46 10.10 30.60 0.31 -2.15 16 9 C 0.05 1.01 6.15 44.99 0.28 1.29 16 10 H 0.14 2.75 7.40 -2.39 -0.02 2.73 16 11 N -0.66 -16.81 5.56 -443.87 -2.47 -19.28 16 12 C 0.53 17.26 7.78 87.27 0.68 17.94 16 13 O -0.52 -17.14 12.67 -3.23 -0.04 -17.18 16 14 C 0.49 20.24 7.74 87.27 0.68 20.92 16 15 O -0.56 -26.64 15.95 -3.24 -0.05 -26.69 16 16 N -0.57 -24.58 2.97 -820.48 -2.44 -27.02 16 17 C 0.05 1.69 6.27 86.36 0.54 2.23 16 18 C -0.12 -4.14 6.08 30.67 0.19 -3.95 16 19 C -0.11 -4.37 5.11 30.62 0.16 -4.21 16 20 C 0.04 1.98 2.25 -11.46 -0.03 1.96 16 21 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 22 C -0.53 -29.62 8.57 25.60 0.22 -29.40 16 23 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 24 C 0.01 0.56 5.30 84.66 0.45 1.01 16 25 N -0.92 -55.08 11.38 21.45 0.24 -54.84 16 26 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 27 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 28 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 29 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 30 C 0.12 6.14 5.38 86.36 0.46 6.60 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.62 7.20 -2.38 -0.02 0.60 16 34 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.05 0.70 6.14 -2.38 -0.01 0.68 16 38 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 0.77 7.88 -2.39 -0.02 0.76 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.12 1.36 8.03 -2.38 -0.02 1.34 16 44 H 0.42 10.20 8.31 -92.71 -0.77 9.43 16 45 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.16 5.11 3.78 -78.87 -0.30 4.81 16 47 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 48 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 49 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 50 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 52 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.08 5.01 5.17 -2.39 -0.01 5.00 16 Total: -1.00 -67.31 410.87 2.88 -64.43 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.17 Total: 28.35 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.78 Total: 6.07 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -4.66 Total: -101.14 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -0.09 Total: -43.87 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -67.31 2.88 -64.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347651589.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.555 kcal (2) G-P(sol) polarization free energy of solvation -67.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds