Wall clock time and date at job start Tue Mar 31 2020 20:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47336 * 2 1 4 4 C 1.53003 * 109.47306 * 239.99928 * 2 1 3 5 5 C 1.53004 * 109.47117 * 120.00236 * 2 1 3 6 6 C 1.52998 * 109.47139 * 60.00038 * 5 2 1 7 7 H 1.09000 * 115.56245 * 29.30945 * 6 5 2 8 8 C 1.52999 * 117.49611 * 243.62522 * 6 5 2 9 9 C 1.53000 * 117.49723 * 175.00419 * 6 5 2 10 10 H 1.09003 * 117.51958 * 0.02562 * 9 6 5 11 11 N 1.46502 * 117.49440 * 214.97826 * 9 6 5 12 12 C 1.34776 * 119.99849 * 154.98504 * 11 9 6 13 13 O 1.21346 * 119.99949 * 0.02562 * 12 11 9 14 14 C 1.49451 * 119.99784 * 179.97438 * 12 11 9 15 15 O 1.21348 * 120.00414 * 353.21200 * 14 12 11 16 16 N 1.34784 * 119.99842 * 173.21547 * 14 12 11 17 17 C 1.46924 * 120.62903 * 351.09763 * 16 14 12 18 18 C 1.53189 * 108.77767 * 233.88636 * 17 16 14 19 19 C 1.53035 * 109.31168 * 305.36773 * 18 17 16 20 20 C 1.53041 * 109.53829 * 61.36592 * 19 18 17 21 21 H 1.08997 * 109.52634 * 58.60443 * 20 19 18 22 22 C 1.50710 * 109.49450 * 178.68314 * 20 19 18 23 23 H 1.07991 * 120.00058 * 359.83822 * 22 20 19 24 24 C 1.37878 * 119.99524 * 179.83742 * 22 20 19 25 25 N 1.31514 * 120.00042 * 359.97438 * 24 22 20 26 26 Si 1.86803 * 119.99829 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46804 * 59.99937 * 26 24 22 28 28 H 1.48496 * 109.46819 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.46820 * 299.99847 * 26 24 22 30 30 C 1.46924 * 120.62859 * 171.38682 * 16 14 12 31 31 H 1.09002 * 109.46890 * 300.00028 * 1 2 3 32 32 H 1.09006 * 109.46695 * 59.99974 * 1 2 3 33 33 H 1.08998 * 109.47102 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46972 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47302 * 300.00093 * 3 2 1 36 36 H 1.09002 * 109.47154 * 60.00133 * 3 2 1 37 37 H 1.09000 * 109.47230 * 300.00555 * 4 2 1 38 38 H 1.09003 * 109.46851 * 59.99975 * 4 2 1 39 39 H 1.08997 * 109.47244 * 179.97438 * 4 2 1 40 40 H 1.09002 * 109.47025 * 299.99654 * 5 2 1 41 41 H 1.09004 * 109.46654 * 180.02562 * 5 2 1 42 42 H 1.08997 * 117.50139 * 145.02567 * 8 6 5 43 43 H 1.09004 * 117.49872 * 359.97438 * 8 6 5 44 44 H 0.97000 * 119.99927 * 334.98153 * 11 9 6 45 45 H 1.09001 * 109.58559 * 353.67728 * 17 16 14 46 46 H 1.08998 * 109.58515 * 114.09771 * 17 16 14 47 47 H 1.09003 * 109.49700 * 185.41727 * 18 17 16 48 48 H 1.09002 * 109.52641 * 65.33418 * 18 17 16 49 49 H 1.09006 * 109.46231 * 301.34203 * 19 18 17 50 50 H 1.09005 * 109.45279 * 181.38148 * 19 18 17 51 51 H 0.97007 * 120.00098 * 180.02562 * 25 24 22 52 52 H 1.09008 * 109.58184 * 245.89853 * 30 16 14 53 53 H 1.08997 * 109.59143 * 6.17663 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2492 7 1 1.3621 -2.6032 0.2659 8 6 0.5860 -2.5793 2.3792 9 6 2.0284 -3.0893 2.3609 10 1 2.7193 -2.6707 3.0928 11 7 2.2434 -4.4983 2.0223 12 6 3.1166 -5.2370 2.7353 13 8 3.7242 -4.7352 3.6580 14 6 3.3355 -6.6746 2.3903 15 8 2.6409 -7.2099 1.5515 16 7 4.3044 -7.3766 3.0108 17 6 5.2769 -6.7020 3.8814 18 6 6.6905 -7.0602 3.4122 19 6 6.8379 -8.5828 3.3665 20 6 5.8354 -9.1643 2.3671 21 1 6.0116 -8.7332 1.3816 22 6 6.0034 -10.6605 2.2990 23 1 6.7522 -11.1479 2.9055 24 6 5.2010 -11.4068 1.4622 25 7 4.2888 -10.8132 0.7239 26 14 5.4088 -13.2614 1.3782 27 1 5.1696 -13.8475 2.7215 28 1 4.4327 -13.8254 0.4116 29 1 6.7887 -13.5853 0.9352 30 6 4.4121 -8.8300 2.8244 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2493 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7209 -1.2495 40 1 1.6767 -0.2075 2.1392 41 1 3.1300 -0.7209 1.2494 42 1 -0.2029 -3.2922 2.1395 43 1 0.3286 -1.8251 3.1230 44 1 1.7573 -4.8996 1.2850 45 1 5.1343 -5.6230 3.8212 46 1 5.1382 -7.0341 4.9102 47 1 7.4206 -6.6447 4.1068 48 1 6.8594 -6.6484 2.4172 49 1 6.6452 -8.9962 4.3566 50 1 7.8507 -8.8403 3.0565 51 1 3.7241 -11.3383 0.1354 52 1 4.2029 -9.3357 3.7672 53 1 3.6972 -9.1555 2.0688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347651590.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:33 Heat of formation + Delta-G solvation = -74.355341 kcal Electronic energy + Delta-G solvation = -29758.589533 eV Core-core repulsion = 25822.859037 eV Total energy + Delta-G solvation = -3935.730497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.96390 -40.25823 -39.30270 -38.52806 -37.25729 -35.29265 -34.03147 -33.40654 -31.59424 -28.50163 -28.11583 -28.03989 -27.60848 -26.82613 -24.81354 -23.52866 -22.58767 -22.00774 -21.61830 -20.46902 -19.50648 -18.81150 -18.25008 -18.01752 -17.27405 -16.91697 -16.49405 -16.28488 -15.57549 -15.48056 -15.39783 -15.29896 -15.05560 -14.86610 -14.64719 -14.40664 -14.15515 -14.13168 -13.93944 -13.50266 -13.25721 -13.13055 -12.96354 -12.84596 -12.62675 -12.55696 -12.51519 -12.50188 -12.30113 -12.27271 -12.16526 -11.76796 -11.65791 -11.60193 -11.44707 -11.32718 -11.15681 -10.99150 -10.90881 -10.54459 -10.19612 -9.79765 -9.55274 -8.11433 -6.28492 0.31791 1.29080 1.42270 1.44054 1.51704 2.08129 2.40980 2.52272 2.89048 3.16082 3.27082 3.61105 3.78242 3.91675 4.06743 4.09714 4.11903 4.16730 4.22021 4.32128 4.45786 4.56774 4.61152 4.71936 4.73110 4.78455 4.80632 4.82880 4.90390 4.95385 4.99405 5.01505 5.02270 5.05985 5.14844 5.16893 5.18605 5.22344 5.28337 5.29253 5.33757 5.37196 5.47530 5.50060 5.56654 5.57807 5.58399 5.83860 5.93365 5.99489 6.29549 6.41545 6.71328 6.83209 6.96689 7.41297 8.92074 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.002254 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.146517 B =12417.256789 C =12968.504536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.147 4.147 5 C -0.076 4.076 6 C -0.138 4.138 7 H 0.112 0.888 8 C -0.169 4.169 9 C 0.053 3.947 10 H 0.135 0.865 11 N -0.662 5.662 12 C 0.524 3.476 13 O -0.522 6.522 14 C 0.485 3.515 15 O -0.557 6.557 16 N -0.576 5.576 17 C 0.072 3.928 18 C -0.126 4.126 19 C -0.106 4.106 20 C 0.039 3.961 21 H -0.011 1.011 22 C -0.536 4.536 23 H 0.063 0.937 24 C 0.010 3.990 25 N -0.914 5.914 26 Si 0.959 3.041 27 H -0.267 1.267 28 H -0.288 1.288 29 H -0.269 1.269 30 C 0.120 3.880 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.121 0.879 44 H 0.416 0.584 45 H 0.138 0.862 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.048 0.952 49 H 0.058 0.942 50 H 0.054 0.946 51 H 0.261 0.739 52 H 0.045 0.955 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.421 24.355 2.200 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 C -0.198 4.198 4 C -0.204 4.204 5 C -0.113 4.113 6 C -0.158 4.158 7 H 0.130 0.870 8 C -0.207 4.207 9 C -0.051 4.051 10 H 0.153 0.847 11 N -0.312 5.312 12 C 0.305 3.695 13 O -0.400 6.400 14 C 0.268 3.732 15 O -0.436 6.436 16 N -0.307 5.307 17 C -0.049 4.049 18 C -0.164 4.164 19 C -0.144 4.144 20 C 0.020 3.980 21 H 0.007 0.993 22 C -0.575 4.575 23 H 0.081 0.919 24 C -0.189 4.189 25 N -0.553 5.553 26 Si 0.784 3.216 27 H -0.192 1.192 28 H -0.213 1.213 29 H -0.194 1.194 30 C -0.001 4.001 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.139 0.861 44 H 0.253 0.747 45 H 0.155 0.845 46 H 0.092 0.908 47 H 0.119 0.881 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.073 0.927 51 H 0.070 0.930 52 H 0.064 0.936 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.481 24.381 2.300 25.332 hybrid contribution -0.228 -1.769 -0.815 1.960 sum -6.709 22.613 1.485 23.633 Atomic orbital electron populations 1.21860 0.94049 1.01935 1.01753 1.20505 0.96085 0.95407 0.94538 1.21861 1.00910 0.94947 1.02100 1.21972 1.00804 1.00308 0.97325 1.21260 1.00318 0.91348 0.98389 1.22994 1.02095 0.95915 0.94748 0.87027 1.23719 0.92182 1.03352 1.01422 1.22036 1.00002 0.79464 1.03645 0.84704 1.45180 1.41305 1.10761 1.33925 1.19883 0.80450 0.86334 0.82815 1.90443 1.47023 1.72684 1.29861 1.20507 0.82197 0.88137 0.82371 1.90747 1.48479 1.71864 1.32554 1.48461 1.27983 1.09395 1.44887 1.22905 0.87310 1.01547 0.93129 1.21933 0.96659 0.96245 1.01555 1.21552 0.98926 0.94759 0.99169 1.18898 0.90915 0.94841 0.93366 0.99305 1.21457 1.18936 0.92631 1.24436 0.91884 1.25896 0.94840 1.03287 0.94884 1.70060 1.21663 1.37094 1.26443 0.85594 0.77952 0.79936 0.78092 1.19236 1.21339 1.19429 1.21966 1.02266 0.75821 1.00075 0.92226 0.92871 0.92607 0.92854 0.92441 0.92111 0.92765 0.92485 0.93122 0.90392 0.91729 0.88156 0.86126 0.74686 0.84547 0.90793 0.88060 0.93329 0.92346 0.92691 0.92968 0.93621 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.23 71.98 0.59 -0.87 16 2 C -0.07 -0.74 0.80 -52.18 -0.04 -0.78 16 3 C -0.14 -1.44 8.47 71.98 0.61 -0.83 16 4 C -0.15 -1.93 8.23 71.98 0.59 -1.34 16 5 C -0.08 -0.92 4.55 30.59 0.14 -0.78 16 6 C -0.14 -1.98 4.18 -10.79 -0.05 -2.02 16 7 H 0.11 1.68 6.06 -2.39 -0.01 1.66 16 8 C -0.17 -2.34 10.10 30.59 0.31 -2.03 16 9 C 0.05 1.02 6.15 44.99 0.28 1.30 16 10 H 0.14 2.76 7.40 -2.39 -0.02 2.74 16 11 N -0.66 -17.02 5.56 -443.86 -2.47 -19.49 16 12 C 0.52 17.20 7.74 87.27 0.68 17.88 16 13 O -0.52 -17.21 12.76 -3.23 -0.04 -17.26 16 14 C 0.49 20.22 7.73 87.27 0.67 20.89 16 15 O -0.56 -26.80 15.93 -3.24 -0.05 -26.85 16 16 N -0.58 -24.58 2.97 -820.49 -2.44 -27.02 16 17 C 0.07 2.48 5.98 86.36 0.52 3.00 16 18 C -0.13 -4.22 6.08 30.67 0.19 -4.03 16 19 C -0.11 -4.30 5.10 30.62 0.16 -4.15 16 20 C 0.04 2.00 2.25 -11.46 -0.03 1.98 16 21 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 22 C -0.54 -29.59 8.56 25.60 0.22 -29.38 16 23 H 0.06 3.34 7.74 -2.92 -0.02 3.32 16 24 C 0.01 0.59 5.30 84.66 0.45 1.04 16 25 N -0.91 -54.91 11.39 21.45 0.24 -54.67 16 26 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 29 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 30 C 0.12 6.08 5.41 86.36 0.47 6.54 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.05 0.63 7.20 -2.39 -0.02 0.61 16 34 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.05 0.76 6.14 -2.39 -0.01 0.75 16 38 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.80 7.88 -2.39 -0.02 0.78 16 41 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.12 1.29 8.03 -2.38 -0.02 1.27 16 44 H 0.42 10.39 8.32 -92.71 -0.77 9.62 16 45 H 0.14 4.49 4.32 -46.59 -0.20 4.28 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 48 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 50 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 51 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 52 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 53 H 0.09 5.04 5.13 -2.39 -0.01 5.03 16 Total: -1.00 -67.21 411.15 2.95 -64.26 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: -0.07 Total: 28.58 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 5.75 Total: 6.42 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -4.66 Total: -101.17 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.09 Total: -44.11 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -67.21 2.95 -64.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347651590.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.098 kcal (2) G-P(sol) polarization free energy of solvation -67.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds