Wall clock time and date at job start Tue Mar 31 2020 19:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00040 * 2 1 4 4 C 1.53005 * 109.46883 * 125.00014 * 3 2 1 5 5 C 1.53002 * 109.46875 * 65.00730 * 4 3 2 6 6 C 1.50694 * 109.47105 * 186.03370 * 5 4 3 7 7 C 1.31000 * 120.00369 * 122.01457 * 6 5 4 8 8 C 1.50704 * 109.46856 * 185.00353 * 4 3 2 9 9 O 1.21282 * 119.99703 * 260.78115 * 8 4 3 10 10 N 1.34768 * 119.99912 * 80.78741 * 8 4 3 11 11 C 1.46920 * 120.63452 * 4.64519 * 10 8 4 12 12 C 1.53188 * 108.77963 * 126.36952 * 11 10 8 13 13 C 1.53038 * 109.31377 * 54.63336 * 12 11 10 14 14 C 1.53039 * 109.54009 * 298.64071 * 13 12 11 15 15 H 1.09007 * 109.49466 * 301.38069 * 14 13 12 16 16 N 1.46496 * 109.49995 * 181.31755 * 14 13 12 17 17 C 1.36937 * 119.99953 * 299.99275 * 16 14 13 18 18 H 1.08005 * 119.99979 * 323.93595 * 17 16 14 19 19 C 1.38817 * 119.99851 * 143.93320 * 17 16 14 20 20 N 1.31621 * 119.99650 * 159.36714 * 19 17 16 21 21 Si 1.86800 * 120.00063 * 339.36776 * 19 17 16 22 22 H 1.48492 * 109.46954 * 91.07203 * 21 19 17 23 23 H 1.48498 * 109.46843 * 211.07155 * 21 19 17 24 24 H 1.48496 * 109.47058 * 331.06738 * 21 19 17 25 25 C 1.46502 * 120.00494 * 119.99693 * 16 14 13 26 26 C 1.53005 * 109.47028 * 84.23688 * 25 16 14 27 27 O 1.42894 * 109.46803 * 66.44625 * 26 25 16 28 28 C 1.46935 * 120.62700 * 184.36313 * 10 8 4 29 29 H 1.07993 * 119.99583 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99869 * 359.97438 * 1 2 3 31 31 H 1.07992 * 120.00196 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46836 * 5.00788 * 3 2 1 33 33 H 1.08994 * 109.47690 * 245.00371 * 3 2 1 34 34 H 1.08997 * 109.47079 * 305.00159 * 4 3 2 35 35 H 1.09005 * 109.46652 * 306.03028 * 5 4 3 36 36 H 1.08996 * 109.47157 * 66.02959 * 5 4 3 37 37 H 1.07997 * 120.00044 * 302.01765 * 6 5 4 38 38 H 1.08005 * 120.00138 * 179.97438 * 7 6 5 39 39 H 1.07997 * 120.00111 * 0.02562 * 7 6 5 40 40 H 1.09000 * 109.58566 * 246.15527 * 11 10 8 41 41 H 1.09001 * 109.58606 * 6.57866 * 11 10 8 42 42 H 1.09002 * 109.49965 * 174.58380 * 12 11 10 43 43 H 1.08996 * 109.49701 * 294.68399 * 12 11 10 44 44 H 1.09000 * 109.46098 * 58.65794 * 13 12 11 45 45 H 1.08997 * 109.46602 * 178.61585 * 13 12 11 46 46 H 0.97002 * 119.99801 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.47513 * 204.24020 * 25 16 14 48 48 H 1.09000 * 109.46854 * 324.24327 * 25 16 14 49 49 H 1.09005 * 109.46900 * 186.44519 * 26 25 16 50 50 H 1.08999 * 109.47144 * 306.44490 * 26 25 16 51 51 H 0.96697 * 114.00213 * 179.97438 * 27 26 25 52 52 H 1.08997 * 109.58652 * 353.42136 * 28 10 8 53 53 H 1.08996 * 109.58552 * 113.84379 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 4.1000 0.2509 0.9920 6 6 4.9674 0.1786 2.2221 7 6 5.0709 -0.9462 2.8855 8 6 3.6991 2.6840 1.2542 9 8 4.8137 2.8369 0.8013 10 7 3.0543 3.7220 1.8225 11 6 1.7474 3.5301 2.4657 12 6 1.8160 4.0773 3.8949 13 6 2.2906 5.5317 3.8578 14 6 3.6926 5.5972 3.2476 15 1 4.3755 4.9869 3.8387 16 7 4.1588 6.9860 3.2413 17 6 3.4557 7.9412 2.5568 18 1 2.9759 7.6921 1.6218 19 6 3.3597 9.2295 3.0648 20 7 3.0579 10.2310 2.2658 21 14 3.6588 9.5417 4.8820 22 1 5.0941 9.8535 5.1010 23 1 2.8291 10.6888 5.3303 24 1 3.2909 8.3312 5.6594 25 6 5.3772 7.3530 3.9673 26 6 6.5980 7.0760 3.0875 27 8 6.5838 7.9564 1.9622 28 6 3.6478 5.0661 1.8160 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4027 -0.9313 34 1 2.4883 1.1468 2.1060 35 1 3.6149 -0.7121 0.8323 36 1 4.7162 0.4953 0.1267 37 1 5.5037 1.0542 2.5570 38 1 5.6929 -0.9981 3.7669 39 1 4.5350 -1.8220 2.5506 40 1 0.9819 4.0669 1.9053 41 1 1.5058 2.4675 2.4924 42 1 0.8271 4.0289 4.3509 43 1 2.5163 3.4809 4.4795 44 1 1.6033 6.1227 3.2525 45 1 2.3168 5.9312 4.8715 46 1 2.9904 11.1312 2.6208 47 1 5.3444 8.4128 4.2199 48 1 5.4469 6.7636 4.8815 49 1 7.5073 7.2400 3.6658 50 1 6.5692 6.0429 2.7410 51 1 7.3308 7.8370 1.3598 52 1 4.6598 5.0167 1.4142 53 1 3.0406 5.7307 1.2015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479655529.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:28 Heat of formation + Delta-G solvation = -19.740922 kcal Electronic energy + Delta-G solvation = -31255.072859 eV Core-core repulsion = 27321.710622 eV Total energy + Delta-G solvation = -3933.362238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.33687 -37.99306 -36.50215 -36.20716 -34.76512 -34.34364 -32.25991 -31.48342 -31.23707 -29.93399 -27.56914 -26.46099 -25.44887 -24.20462 -23.02569 -22.22767 -21.21284 -20.23631 -19.86671 -19.35075 -18.44297 -17.34151 -16.70002 -16.54958 -15.83277 -15.61217 -15.29890 -15.18060 -14.79918 -14.46552 -14.06543 -14.03344 -13.67583 -13.50102 -13.18762 -13.16157 -13.02582 -12.94454 -12.70982 -12.47732 -12.31152 -12.27859 -11.83781 -11.62208 -11.47726 -11.32402 -11.14838 -11.08229 -10.91775 -10.78848 -10.67778 -10.38741 -10.28463 -10.04279 -9.67962 -9.66562 -9.48421 -9.41505 -9.36654 -9.08704 -8.52400 -8.25770 -6.80328 -5.86773 -3.28338 2.00292 2.19666 2.83486 3.22367 3.34954 3.48875 3.52149 4.38123 4.59464 4.65999 4.67201 4.76405 4.89448 4.94820 5.00461 5.10303 5.14887 5.18723 5.26046 5.30026 5.34541 5.49292 5.50505 5.55804 5.64304 5.67600 5.74580 5.81044 5.87668 5.90378 5.93072 5.97394 6.00156 6.05675 6.17127 6.19665 6.23631 6.36749 6.36844 6.48629 6.50627 6.55148 6.57748 6.68323 6.73292 6.77145 6.94992 7.02480 7.69418 8.10979 8.39163 8.44804 8.50882 9.02749 9.81008 10.16262 11.29195 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014830 B = 0.003444 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.589734 B = 8128.813274 C = 8805.417273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.151 4.151 3 C -0.085 4.085 4 C -0.099 4.099 5 C -0.078 4.078 6 C -0.141 4.141 7 C -0.204 4.204 8 C 0.516 3.484 9 O -0.544 6.544 10 N -0.604 5.604 11 C 0.105 3.895 12 C -0.133 4.133 13 C -0.127 4.127 14 C 0.171 3.829 15 H 0.051 0.949 16 N -0.591 5.591 17 C -0.249 4.249 18 H 0.078 0.922 19 C 0.040 3.960 20 N -0.901 5.901 21 Si 0.877 3.123 22 H -0.287 1.287 23 H -0.305 1.305 24 H -0.272 1.272 25 C 0.128 3.872 26 C 0.061 3.939 27 O -0.538 6.538 28 C 0.104 3.896 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.260 0.740 47 H 0.071 0.929 48 H 0.048 0.952 49 H 0.023 0.977 50 H 0.033 0.967 51 H 0.355 0.645 52 H 0.084 0.916 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 -21.424 0.541 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.169 4.169 3 C -0.123 4.123 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.159 4.159 7 C -0.241 4.241 8 C 0.304 3.696 9 O -0.421 6.421 10 N -0.337 5.337 11 C -0.018 4.018 12 C -0.171 4.171 13 C -0.167 4.167 14 C 0.063 3.937 15 H 0.069 0.931 16 N -0.312 5.312 17 C -0.377 4.377 18 H 0.095 0.905 19 C -0.160 4.160 20 N -0.543 5.543 21 Si 0.709 3.291 22 H -0.216 1.216 23 H -0.233 1.233 24 H -0.197 1.197 25 C 0.002 3.998 26 C -0.020 4.020 27 O -0.340 6.340 28 C -0.020 4.020 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.067 0.933 49 H 0.041 0.959 50 H 0.051 0.949 51 H 0.199 0.801 52 H 0.103 0.897 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.070 -20.910 0.579 21.020 hybrid contribution 0.716 0.169 0.916 1.174 sum -1.354 -20.741 1.495 20.839 Atomic orbital electron populations 1.23891 0.95898 1.01978 1.01124 1.22918 0.95907 0.98183 0.99894 1.20705 0.97523 0.96151 0.97897 1.21330 0.97081 0.93074 1.00518 1.20691 0.95595 0.97591 0.97704 1.23025 0.98103 0.98599 0.96209 1.23786 1.02447 0.97431 1.00419 1.20462 0.85772 0.85609 0.77779 1.90672 1.19136 1.84204 1.48095 1.48241 1.20292 1.09477 1.55720 1.21813 0.84991 1.00988 0.94006 1.21944 1.01413 0.98191 0.95592 1.21962 0.99023 0.93866 1.01812 1.20495 0.93681 0.86309 0.93260 0.93121 1.44024 1.23356 1.03816 1.59988 1.18533 1.28524 0.89247 1.01396 0.90481 1.25308 0.97901 0.95915 0.96835 1.69854 1.51188 0.99130 1.34112 0.87020 0.76293 0.77031 0.88777 1.21581 1.23340 1.19693 1.21438 0.85598 1.00454 0.92319 1.22894 0.97937 0.92469 0.88678 1.86880 1.49636 1.60521 1.36937 1.22173 0.99775 0.80126 0.99886 0.88504 0.88404 0.87167 0.90613 0.90130 0.88748 0.90859 0.89667 0.87247 0.88739 0.88836 0.91217 0.90251 0.91184 0.92212 0.90591 0.92235 0.92991 0.91164 0.93340 0.95907 0.94863 0.80149 0.89717 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 14.32 29.01 0.42 -0.97 16 2 C -0.15 -1.17 9.03 -36.03 -0.33 -1.50 16 3 C -0.09 -0.80 5.03 -27.88 -0.14 -0.94 16 4 C -0.10 -1.05 1.33 -91.77 -0.12 -1.18 16 5 C -0.08 -0.81 4.72 -27.88 -0.13 -0.94 16 6 C -0.14 -1.58 8.91 -36.03 -0.32 -1.90 16 7 C -0.20 -1.92 14.32 29.01 0.42 -1.50 16 8 C 0.52 7.64 6.30 -10.99 -0.07 7.57 16 9 O -0.54 -10.02 14.81 5.56 0.08 -9.93 16 10 N -0.60 -9.05 2.98 -173.04 -0.52 -9.56 16 11 C 0.11 1.25 5.81 -3.72 -0.02 1.23 16 12 C -0.13 -1.68 6.08 -26.61 -0.16 -1.85 16 13 C -0.13 -2.19 5.12 -26.69 -0.14 -2.33 16 14 C 0.17 3.26 2.77 -68.04 -0.19 3.07 16 15 H 0.05 0.94 7.87 -51.93 -0.41 0.53 16 16 N -0.59 -13.53 2.03 -165.77 -0.34 -13.87 16 17 C -0.25 -6.72 8.57 -15.06 -0.13 -6.85 16 18 H 0.08 2.27 6.88 -52.48 -0.36 1.91 16 19 C 0.04 1.15 5.31 -17.43 -0.09 1.06 16 20 N -0.90 -27.71 13.97 55.49 0.78 -26.93 16 21 Si 0.88 22.28 25.02 -169.99 -4.25 18.03 16 22 H -0.29 -7.23 6.49 56.52 0.37 -6.86 16 23 H -0.31 -7.91 7.11 56.52 0.40 -7.51 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.13 2.79 4.60 -4.04 -0.02 2.77 16 26 C 0.06 1.19 7.38 37.16 0.27 1.46 16 27 O -0.54 -11.69 13.47 -35.23 -0.47 -12.16 16 28 C 0.10 1.93 5.75 -3.93 -0.02 1.91 16 29 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 30 H 0.10 0.69 7.84 -52.48 -0.41 0.28 16 31 H 0.11 0.75 6.84 -52.49 -0.36 0.39 16 32 H 0.08 0.72 7.31 -51.93 -0.38 0.34 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.91 6.28 -51.93 -0.33 0.58 16 35 H 0.07 0.60 6.15 -51.93 -0.32 0.28 16 36 H 0.08 1.00 7.67 -51.93 -0.40 0.61 16 37 H 0.11 1.46 7.57 -52.49 -0.40 1.06 16 38 H 0.09 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.09 0.74 7.83 -52.49 -0.41 0.33 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.75 5.42 -51.93 -0.28 0.47 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.45 7.70 -51.93 -0.40 1.05 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 47 H 0.07 1.73 3.11 -51.93 -0.16 1.56 16 48 H 0.05 0.93 8.04 -51.93 -0.42 0.52 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.36 5.76 9.12 45.56 0.42 6.17 16 52 H 0.08 1.77 7.00 -51.93 -0.36 1.41 16 53 H 0.08 1.57 6.77 -51.93 -0.35 1.22 16 LS Contribution 409.13 15.07 6.17 6.17 Total: -1.00 -33.22 409.13 -7.64 -40.86 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -8.31 Total: 8.28 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.77 Total: -0.87 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.08 Total: -50.37 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.39 Total: -22.10 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.25 Total: 18.03 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.22 -7.64 -40.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479655529.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.119 kcal (2) G-P(sol) polarization free energy of solvation -33.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds