Wall clock time and date at job start Tue Mar 31 2020 19:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00040 * 2 1 4 4 C 1.53005 * 109.46883 * 125.00014 * 3 2 1 5 5 C 1.53002 * 109.46875 * 65.00730 * 4 3 2 6 6 C 1.50694 * 109.47105 * 186.03370 * 5 4 3 7 7 C 1.31000 * 120.00369 * 122.01457 * 6 5 4 8 8 C 1.50704 * 109.46856 * 185.00353 * 4 3 2 9 9 O 1.21282 * 119.99703 * 260.78115 * 8 4 3 10 10 N 1.34768 * 119.99912 * 80.78741 * 8 4 3 11 11 C 1.46920 * 120.63452 * 4.64519 * 10 8 4 12 12 C 1.53188 * 108.77963 * 126.36952 * 11 10 8 13 13 C 1.53038 * 109.31377 * 54.63336 * 12 11 10 14 14 C 1.53039 * 109.54009 * 298.64071 * 13 12 11 15 15 H 1.09007 * 109.49466 * 301.38069 * 14 13 12 16 16 N 1.46496 * 109.49995 * 181.31755 * 14 13 12 17 17 C 1.36937 * 119.99953 * 299.99275 * 16 14 13 18 18 H 1.08005 * 119.99979 * 323.93595 * 17 16 14 19 19 C 1.38817 * 119.99851 * 143.93320 * 17 16 14 20 20 N 1.31621 * 119.99650 * 159.36714 * 19 17 16 21 21 Si 1.86800 * 120.00063 * 339.36776 * 19 17 16 22 22 H 1.48492 * 109.46954 * 91.07203 * 21 19 17 23 23 H 1.48498 * 109.46843 * 211.07155 * 21 19 17 24 24 H 1.48496 * 109.47058 * 331.06738 * 21 19 17 25 25 C 1.46502 * 120.00494 * 119.99693 * 16 14 13 26 26 C 1.53005 * 109.47028 * 84.23688 * 25 16 14 27 27 O 1.42894 * 109.46803 * 66.44625 * 26 25 16 28 28 C 1.46935 * 120.62700 * 184.36313 * 10 8 4 29 29 H 1.07993 * 119.99583 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99869 * 359.97438 * 1 2 3 31 31 H 1.07992 * 120.00196 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46836 * 5.00788 * 3 2 1 33 33 H 1.08994 * 109.47690 * 245.00371 * 3 2 1 34 34 H 1.08997 * 109.47079 * 305.00159 * 4 3 2 35 35 H 1.09005 * 109.46652 * 306.03028 * 5 4 3 36 36 H 1.08996 * 109.47157 * 66.02959 * 5 4 3 37 37 H 1.07997 * 120.00044 * 302.01765 * 6 5 4 38 38 H 1.08005 * 120.00138 * 179.97438 * 7 6 5 39 39 H 1.07997 * 120.00111 * 0.02562 * 7 6 5 40 40 H 1.09000 * 109.58566 * 246.15527 * 11 10 8 41 41 H 1.09001 * 109.58606 * 6.57866 * 11 10 8 42 42 H 1.09002 * 109.49965 * 174.58380 * 12 11 10 43 43 H 1.08996 * 109.49701 * 294.68399 * 12 11 10 44 44 H 1.09000 * 109.46098 * 58.65794 * 13 12 11 45 45 H 1.08997 * 109.46602 * 178.61585 * 13 12 11 46 46 H 0.97002 * 119.99801 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.47513 * 204.24020 * 25 16 14 48 48 H 1.09000 * 109.46854 * 324.24327 * 25 16 14 49 49 H 1.09005 * 109.46900 * 186.44519 * 26 25 16 50 50 H 1.08999 * 109.47144 * 306.44490 * 26 25 16 51 51 H 0.96697 * 114.00213 * 179.97438 * 27 26 25 52 52 H 1.08997 * 109.58652 * 353.42136 * 28 10 8 53 53 H 1.08996 * 109.58552 * 113.84379 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 4.1000 0.2509 0.9920 6 6 4.9674 0.1786 2.2221 7 6 5.0709 -0.9462 2.8855 8 6 3.6991 2.6840 1.2542 9 8 4.8137 2.8369 0.8013 10 7 3.0543 3.7220 1.8225 11 6 1.7474 3.5301 2.4657 12 6 1.8160 4.0773 3.8949 13 6 2.2906 5.5317 3.8578 14 6 3.6926 5.5972 3.2476 15 1 4.3755 4.9869 3.8387 16 7 4.1588 6.9860 3.2413 17 6 3.4557 7.9412 2.5568 18 1 2.9759 7.6921 1.6218 19 6 3.3597 9.2295 3.0648 20 7 3.0579 10.2310 2.2658 21 14 3.6588 9.5417 4.8820 22 1 5.0941 9.8535 5.1010 23 1 2.8291 10.6888 5.3303 24 1 3.2909 8.3312 5.6594 25 6 5.3772 7.3530 3.9673 26 6 6.5980 7.0760 3.0875 27 8 6.5838 7.9564 1.9622 28 6 3.6478 5.0661 1.8160 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4027 -0.9313 34 1 2.4883 1.1468 2.1060 35 1 3.6149 -0.7121 0.8323 36 1 4.7162 0.4953 0.1267 37 1 5.5037 1.0542 2.5570 38 1 5.6929 -0.9981 3.7669 39 1 4.5350 -1.8220 2.5506 40 1 0.9819 4.0669 1.9053 41 1 1.5058 2.4675 2.4924 42 1 0.8271 4.0289 4.3509 43 1 2.5163 3.4809 4.4795 44 1 1.6033 6.1227 3.2525 45 1 2.3168 5.9312 4.8715 46 1 2.9904 11.1312 2.6208 47 1 5.3444 8.4128 4.2199 48 1 5.4469 6.7636 4.8815 49 1 7.5073 7.2400 3.6658 50 1 6.5692 6.0429 2.7410 51 1 7.3308 7.8370 1.3598 52 1 4.6598 5.0167 1.4142 53 1 3.0406 5.7307 1.2015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479655529.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:27 Heat of formation + Delta-G solvation = -42.455237 kcal Electronic energy + Delta-G solvation = -31256.057826 eV Core-core repulsion = 27321.710622 eV Total energy + Delta-G solvation = -3934.347204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.52776 -39.42786 -37.91991 -37.26752 -36.40016 -35.08764 -33.90775 -33.16523 -32.19391 -31.28941 -29.35112 -27.20602 -26.68164 -25.94435 -24.29831 -23.53629 -22.70134 -21.26582 -20.94720 -20.28558 -19.57903 -18.51620 -18.46266 -18.26781 -17.26969 -16.89507 -16.62315 -16.21822 -16.10971 -15.70367 -15.42279 -15.26321 -15.06239 -14.68183 -14.65518 -14.44909 -14.28830 -14.05898 -13.98142 -13.80348 -13.66810 -13.52331 -13.19498 -13.05751 -12.87109 -12.52290 -12.36387 -12.21232 -12.17177 -11.93752 -11.84708 -11.80398 -11.70340 -11.56948 -11.51200 -11.26096 -10.76665 -10.69058 -10.50314 -10.21582 -10.13815 -9.68620 -8.71357 -8.07524 -5.45116 1.31335 1.38513 1.40487 1.44417 1.50999 1.71003 2.01498 2.48772 3.08429 3.31331 3.45734 3.63437 3.84473 3.88939 3.96283 4.05035 4.10175 4.19949 4.22302 4.27056 4.35791 4.36549 4.41894 4.44888 4.48287 4.49426 4.56565 4.63258 4.71054 4.77765 4.80183 4.85097 4.88007 4.95784 5.00145 5.02320 5.05740 5.14993 5.17711 5.18916 5.21594 5.39579 5.50810 5.57786 5.77685 5.83518 5.91780 5.95637 6.02350 6.25639 6.51278 7.00148 7.10092 7.21650 7.70839 8.09584 9.12726 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014830 B = 0.003444 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.589734 B = 8128.813274 C = 8805.417273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C -0.082 4.082 4 C -0.086 4.086 5 C -0.073 4.073 6 C -0.168 4.168 7 C -0.181 4.181 8 C 0.512 3.488 9 O -0.586 6.586 10 N -0.605 5.605 11 C 0.102 3.898 12 C -0.122 4.122 13 C -0.122 4.122 14 C 0.170 3.830 15 H 0.065 0.935 16 N -0.601 5.601 17 C -0.219 4.219 18 H 0.037 0.963 19 C -0.021 4.021 20 N -0.956 5.956 21 Si 0.941 3.059 22 H -0.283 1.283 23 H -0.315 1.315 24 H -0.252 1.252 25 C 0.115 3.885 26 C 0.064 3.936 27 O -0.576 6.576 28 C 0.121 3.879 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.257 0.743 47 H 0.045 0.955 48 H 0.081 0.919 49 H 0.058 0.942 50 H 0.037 0.963 51 H 0.377 0.623 52 H 0.056 0.944 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 -25.503 2.713 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.175 4.175 3 C -0.120 4.120 4 C -0.107 4.107 5 C -0.110 4.110 6 C -0.186 4.186 7 C -0.217 4.217 8 C 0.301 3.699 9 O -0.467 6.467 10 N -0.337 5.337 11 C -0.020 4.020 12 C -0.160 4.160 13 C -0.162 4.162 14 C 0.063 3.937 15 H 0.083 0.917 16 N -0.323 5.323 17 C -0.349 4.349 18 H 0.055 0.945 19 C -0.216 4.216 20 N -0.601 5.601 21 Si 0.772 3.228 22 H -0.211 1.211 23 H -0.245 1.245 24 H -0.176 1.176 25 C -0.010 4.010 26 C -0.016 4.016 27 O -0.381 6.381 28 C -0.004 4.004 29 H 0.130 0.870 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.135 0.865 40 H 0.089 0.911 41 H 0.135 0.865 42 H 0.119 0.881 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.099 0.901 49 H 0.076 0.924 50 H 0.055 0.945 51 H 0.223 0.777 52 H 0.074 0.926 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.818 -25.057 2.774 25.367 hybrid contribution 1.008 1.325 0.129 1.670 sum -1.810 -23.731 2.903 23.977 Atomic orbital electron populations 1.24062 0.95766 1.02738 0.99658 1.22848 0.96027 0.97490 1.01125 1.20664 0.97133 0.97496 0.96663 1.21340 0.97264 0.90054 1.02023 1.20669 0.95173 0.98670 0.96510 1.22887 0.99715 0.98442 0.97576 1.24000 1.00996 0.97186 0.99552 1.21328 0.85280 0.86866 0.76377 1.90651 1.21291 1.85049 1.49688 1.48295 1.21379 1.07903 1.56139 1.22081 0.83203 1.03349 0.93344 1.21900 1.03210 0.94624 0.96308 1.21858 0.96929 0.97007 1.00365 1.20651 0.95269 0.84194 0.93556 0.91693 1.44127 1.23916 1.04504 1.59779 1.18294 1.26844 0.89931 0.99820 0.94542 1.25894 0.99132 0.95795 1.00735 1.70003 1.54688 0.99463 1.35955 0.85968 0.76065 0.77041 0.83769 1.21086 1.24455 1.17571 1.21618 0.85902 0.99502 0.93955 1.22854 0.98359 0.92198 0.88194 1.86806 1.51539 1.61447 1.38290 1.21640 0.97771 0.82013 0.99005 0.86958 0.88511 0.85761 0.90851 0.91509 0.86594 0.87839 0.91927 0.90283 0.88205 0.86523 0.91069 0.86522 0.88150 0.90935 0.93287 0.92886 0.93463 0.93664 0.90085 0.92400 0.94466 0.77655 0.92584 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 14.32 67.78 0.97 -1.05 16 2 C -0.16 -1.91 9.03 25.65 0.23 -1.67 16 3 C -0.08 -1.38 5.03 29.85 0.15 -1.23 16 4 C -0.09 -1.66 1.33 -11.54 -0.02 -1.67 16 5 C -0.07 -1.37 4.72 29.85 0.14 -1.23 16 6 C -0.17 -3.47 8.91 25.64 0.23 -3.24 16 7 C -0.18 -2.81 14.32 67.78 0.97 -1.84 16 8 C 0.51 15.04 6.30 87.66 0.55 15.60 16 9 O -0.59 -22.42 14.81 -3.04 -0.04 -22.47 16 10 N -0.60 -17.93 2.98 -819.75 -2.44 -20.37 16 11 C 0.10 2.19 5.81 86.36 0.50 2.69 16 12 C -0.12 -2.72 6.08 30.67 0.19 -2.53 16 13 C -0.12 -4.10 5.12 30.62 0.16 -3.94 16 14 C 0.17 6.49 2.77 44.92 0.12 6.62 16 15 H 0.06 2.31 7.87 -2.38 -0.02 2.29 16 16 N -0.60 -27.89 2.03 -678.39 -1.38 -29.26 16 17 C -0.22 -12.36 8.57 84.03 0.72 -11.64 16 18 H 0.04 2.33 6.88 -2.91 -0.02 2.31 16 19 C -0.02 -1.22 5.31 84.86 0.45 -0.77 16 20 N -0.96 -61.66 13.97 21.65 0.30 -61.35 16 21 Si 0.94 47.07 25.02 68.60 1.72 48.79 16 22 H -0.28 -13.80 6.49 99.48 0.65 -13.16 16 23 H -0.32 -16.13 7.11 99.48 0.71 -15.42 16 24 H -0.25 -11.58 7.11 99.48 0.71 -10.88 16 25 C 0.12 4.92 4.60 86.38 0.40 5.32 16 26 C 0.06 2.44 7.38 71.98 0.53 2.97 16 27 O -0.58 -25.34 13.47 -148.98 -2.01 -27.35 16 28 C 0.12 4.69 5.75 86.22 0.50 5.18 16 29 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 30 H 0.10 1.07 7.84 -2.91 -0.02 1.05 16 31 H 0.12 1.17 6.84 -2.91 -0.02 1.15 16 32 H 0.07 1.27 7.31 -2.39 -0.02 1.25 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.12 1.76 6.28 -2.39 -0.02 1.74 16 35 H 0.10 1.30 6.15 -2.38 -0.01 1.29 16 36 H 0.06 1.46 7.67 -2.39 -0.02 1.44 16 37 H 0.08 2.11 7.57 -2.91 -0.02 2.09 16 38 H 0.10 1.44 8.06 -2.91 -0.02 1.41 16 39 H 0.12 1.29 7.83 -2.91 -0.02 1.27 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.12 1.69 5.42 -2.39 -0.01 1.68 16 42 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.90 7.70 -2.39 -0.02 1.88 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 47 H 0.05 2.19 3.11 -2.39 -0.01 2.18 16 48 H 0.08 2.91 8.04 -2.39 -0.02 2.89 16 49 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 50 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.38 12.36 9.12 -74.06 -0.68 11.68 16 52 H 0.06 2.48 7.00 -2.39 -0.02 2.46 16 53 H 0.04 1.93 6.77 -2.39 -0.02 1.91 16 Total: -1.00 -78.06 409.13 3.09 -74.97 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.15 Total: 29.47 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 6.79 Total: 7.56 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -3.52 Total: -110.98 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -2.05 Total: -49.81 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.72 Total: 48.79 kcal Total: -78.06 3.09 -74.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479655529.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.515 kcal (2) G-P(sol) polarization free energy of solvation -78.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds