Wall clock time and date at job start Tue Mar 31 2020 19:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47228 * 2 1 4 4 C 1.53003 * 109.47107 * 120.00348 * 2 1 3 5 5 C 1.52998 * 109.47117 * 173.39482 * 4 2 1 6 6 C 1.50699 * 112.84801 * 305.76412 * 5 4 2 7 7 O 1.21282 * 120.00056 * 352.06962 * 6 5 4 8 8 N 1.34785 * 120.00178 * 172.06868 * 6 5 4 9 9 C 1.46498 * 120.00100 * 180.02562 * 8 6 5 10 10 H 1.08997 * 110.97425 * 37.69435 * 9 8 6 11 11 C 1.55012 * 111.10376 * 273.54688 * 9 8 6 12 12 O 1.43907 * 105.18058 * 205.99002 * 11 9 8 13 13 C 1.42393 * 109.55734 * 24.29138 * 12 11 9 14 14 C 1.52701 * 116.14544 * 129.85155 * 13 12 11 15 15 N 1.47221 * 87.79779 * 90.70327 * 14 13 12 16 16 C 1.36933 * 135.97827 * 206.43610 * 15 14 13 17 17 H 1.08001 * 119.99583 * 354.05035 * 16 15 14 18 18 C 1.38807 * 120.00201 * 174.04819 * 16 15 14 19 19 N 1.31620 * 119.99983 * 178.71387 * 18 16 15 20 20 Si 1.86793 * 120.00085 * 358.71885 * 18 16 15 21 21 H 1.48506 * 109.47375 * 178.98728 * 20 18 16 22 22 H 1.48511 * 109.47101 * 298.98444 * 20 18 16 23 23 H 1.48503 * 109.47290 * 58.98285 * 20 18 16 24 24 C 1.47215 * 88.05092 * 26.69560 * 15 14 13 25 25 C 1.53652 * 108.53354 * 358.08791 * 13 12 11 26 26 C 1.53772 * 113.62069 * 76.96459 * 5 4 2 27 27 C 1.53954 * 87.02323 * 89.22720 * 26 5 4 28 28 C 1.53782 * 113.61408 * 174.57393 * 5 4 2 29 29 H 1.08993 * 109.47376 * 300.00154 * 1 2 3 30 30 H 1.09008 * 109.46899 * 60.00108 * 1 2 3 31 31 H 1.08994 * 109.47203 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47320 * 239.99902 * 2 1 3 33 33 H 1.08993 * 109.47000 * 312.50503 * 3 2 1 34 34 H 1.08998 * 109.47192 * 72.51109 * 3 2 1 35 35 H 1.09003 * 109.47112 * 192.50955 * 3 2 1 36 36 H 1.08995 * 109.46854 * 53.38959 * 4 2 1 37 37 H 1.09003 * 109.46489 * 293.39117 * 4 2 1 38 38 H 0.96995 * 119.99406 * 0.02562 * 8 6 5 39 39 H 1.09001 * 110.30382 * 87.06515 * 11 9 8 40 40 H 1.08996 * 110.38761 * 324.95573 * 11 9 8 41 41 H 1.08997 * 113.49708 * 335.97787 * 14 13 12 42 42 H 1.09003 * 113.56132 * 205.44346 * 14 13 12 43 43 H 0.97004 * 119.99611 * 354.95602 * 19 18 16 44 44 H 1.08995 * 113.50427 * 88.04057 * 24 15 14 45 45 H 1.08997 * 113.49744 * 218.58382 * 24 15 14 46 46 H 1.09006 * 110.92860 * 97.29771 * 25 13 12 47 47 H 1.09001 * 110.93310 * 220.95645 * 25 13 12 48 48 H 1.09001 * 113.61811 * 203.74977 * 26 5 4 49 49 H 1.09008 * 113.61207 * 334.65233 * 26 5 4 50 50 H 1.09007 * 113.53836 * 270.81910 * 27 26 5 51 51 H 1.08999 * 113.74289 * 139.94277 * 27 26 5 52 52 H 1.09002 * 113.61242 * 25.34389 * 28 5 4 53 53 H 1.09001 * 113.61459 * 156.24796 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5609 -0.8666 1.1690 6 6 4.0187 -1.5346 -0.1019 7 8 3.2049 -2.0198 -0.8591 8 7 5.3325 -1.5928 -0.3972 9 6 5.7775 -2.2416 -1.6330 10 1 5.0872 -2.0371 -2.4514 11 6 5.9630 -3.7667 -1.4271 12 8 6.9367 -4.1639 -2.4095 13 6 7.7372 -3.0421 -2.7679 14 6 9.2489 -3.2535 -2.7265 15 7 9.1734 -3.6619 -4.1389 16 6 9.9059 -4.4643 -4.9724 17 1 10.8332 -4.8974 -4.6276 18 6 9.4565 -4.7210 -6.2604 19 7 10.1731 -5.4716 -7.0700 20 14 7.8349 -4.0011 -6.8447 21 1 7.5954 -4.4006 -8.2548 22 1 6.7312 -4.5105 -5.9917 23 1 7.8889 -2.5199 -6.7522 24 6 7.9691 -2.8246 -4.2644 25 6 7.2257 -1.8124 -2.0017 26 6 4.3216 0.4302 1.4919 27 6 4.3048 -0.0212 2.9637 28 6 4.1906 -1.4623 2.4392 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.5065 2.0165 -0.7576 34 1 1.8699 1.8880 0.9801 35 1 3.1070 1.4506 -0.2226 36 1 1.5832 -1.7091 1.3102 37 1 1.7763 -0.1437 2.1352 38 1 5.9833 -1.2050 0.2085 39 1 5.0210 -4.2885 -1.5959 40 1 6.3337 -3.9720 -0.4229 41 1 9.5572 -4.0571 -2.0577 42 1 9.8133 -2.3343 -2.5695 43 1 11.0484 -5.7849 -6.7932 44 1 8.1853 -1.7884 -4.5245 45 1 7.1966 -3.2659 -4.8940 46 1 7.8202 -1.6374 -1.1049 47 1 7.2195 -0.9299 -2.6414 48 1 5.3210 0.4696 1.0587 49 1 3.7421 1.3344 1.3049 50 1 3.4246 0.3149 3.5120 51 1 5.2358 0.1779 3.4944 52 1 3.5057 -2.0839 3.0160 53 1 5.1542 -1.9413 2.2655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502459816.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:11 Heat of formation + Delta-G solvation = -20.245762 kcal Electronic energy + Delta-G solvation = -30760.221861 eV Core-core repulsion = 26826.837731 eV Total energy + Delta-G solvation = -3933.384129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.12972 -41.43973 -39.06312 -38.05553 -36.51943 -35.42899 -34.55461 -31.89427 -30.18770 -29.36865 -28.40308 -27.31636 -27.13902 -26.19920 -25.75996 -23.47508 -22.64022 -22.03123 -21.13813 -20.83353 -19.87176 -19.57849 -18.11218 -17.77759 -17.64108 -16.66965 -16.46950 -16.16020 -15.93945 -15.74271 -15.67352 -15.48659 -15.26824 -14.93571 -14.86101 -14.51360 -14.30340 -14.02309 -13.57472 -13.45013 -13.31865 -13.13941 -13.02396 -12.84882 -12.80344 -12.69609 -12.63671 -12.46004 -12.40720 -12.28860 -12.03877 -11.75490 -11.50476 -11.49034 -11.28542 -11.25164 -11.12725 -11.11621 -10.77267 -10.42084 -10.30988 -10.05410 -9.22210 -8.66964 -5.48606 1.32701 1.44974 1.58808 1.64152 2.00156 2.49924 2.69229 2.99613 3.17119 3.32506 3.44949 3.53475 3.62257 3.65982 3.70134 3.93726 3.96893 4.00859 4.11206 4.16908 4.24644 4.34811 4.48961 4.55204 4.60320 4.62102 4.68239 4.71996 4.74793 4.76516 4.80212 4.85468 4.85611 4.86844 4.90102 4.93146 4.97581 5.03268 5.04522 5.09191 5.17762 5.19448 5.20136 5.28899 5.35320 5.42018 5.52009 5.55304 5.67393 5.92540 6.14962 6.54951 6.67623 7.28045 7.30194 8.24191 8.88636 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.002688 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.811087 B =10413.712066 C =11131.208058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.148 4.148 4 C -0.071 4.071 5 C -0.103 4.103 6 C 0.523 3.477 7 O -0.573 6.573 8 N -0.702 5.702 9 C 0.124 3.876 10 H 0.087 0.913 11 C 0.037 3.963 12 O -0.373 6.373 13 C 0.086 3.914 14 C 0.116 3.884 15 N -0.660 5.660 16 C -0.284 4.284 17 H 0.051 0.949 18 C -0.086 4.086 19 N -0.973 5.973 20 Si 1.112 2.888 21 H -0.303 1.303 22 H -0.285 1.285 23 H -0.256 1.256 24 C 0.076 3.924 25 C -0.124 4.124 26 C -0.139 4.139 27 C -0.126 4.126 28 C -0.127 4.127 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.417 0.583 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.246 0.754 44 H 0.084 0.916 45 H 0.040 0.960 46 H 0.122 0.878 47 H 0.113 0.887 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.091 0.909 51 H 0.086 0.914 52 H 0.074 0.926 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.888 20.005 26.991 37.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 C -0.204 4.204 4 C -0.109 4.109 5 C -0.106 4.106 6 C 0.312 3.688 7 O -0.452 6.452 8 N -0.356 5.356 9 C 0.018 3.982 10 H 0.105 0.895 11 C -0.041 4.041 12 O -0.292 6.292 13 C 0.044 3.956 14 C -0.009 4.009 15 N -0.389 5.389 16 C -0.412 4.412 17 H 0.068 0.932 18 C -0.278 4.278 19 N -0.620 5.620 20 Si 0.940 3.060 21 H -0.231 1.231 22 H -0.213 1.213 23 H -0.181 1.181 24 C -0.049 4.049 25 C -0.163 4.163 26 C -0.176 4.176 27 C -0.163 4.163 28 C -0.165 4.165 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.256 0.744 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.055 0.945 44 H 0.101 0.899 45 H 0.058 0.942 46 H 0.141 0.859 47 H 0.132 0.868 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.109 0.891 51 H 0.104 0.896 52 H 0.093 0.907 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.324 19.334 24.974 36.514 hybrid contribution 1.817 -0.869 0.791 2.164 sum -16.506 18.465 25.764 35.738 Atomic orbital electron populations 1.21785 0.95183 1.01120 1.01885 1.21292 0.95932 0.96767 0.99024 1.22084 1.01050 0.95171 1.02138 1.21208 0.90757 1.00482 0.98436 1.22224 0.97640 0.99284 0.91455 1.21097 0.81736 0.78311 0.87680 1.90664 1.53909 1.48260 1.52337 1.45698 1.07887 1.59059 1.22923 1.22381 0.96366 0.91219 0.88243 0.89511 1.23963 0.91739 0.95633 0.92729 1.88458 1.47695 1.33065 1.59955 1.22850 0.91987 0.86438 0.94295 1.22935 0.93842 0.98942 0.85153 1.45996 1.31659 1.51869 1.09358 1.20018 1.03056 1.23064 0.95074 0.93154 1.26962 1.08219 0.99562 0.93025 1.71010 1.12976 1.38947 1.39021 0.83215 0.72122 0.76848 0.73856 1.23150 1.21315 1.18118 1.23521 0.89076 0.95871 0.96418 1.23104 0.93553 0.97054 1.02576 1.23479 1.00651 0.96248 0.97195 1.22840 1.03644 0.94118 0.95745 1.23055 1.01148 0.98331 0.93964 0.91575 0.93150 0.93838 0.91960 0.93409 0.91054 0.92135 0.93023 0.89087 0.74401 0.90783 0.90112 0.93844 0.89569 0.94465 0.89884 0.94220 0.85938 0.86831 0.88708 0.88499 0.89096 0.89578 0.90712 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.16 71.98 0.66 -1.49 16 2 C -0.11 -1.83 2.67 -10.79 -0.03 -1.86 16 3 C -0.15 -1.79 7.59 71.98 0.55 -1.24 16 4 C -0.07 -0.97 3.88 30.59 0.12 -0.85 16 5 C -0.10 -1.25 0.82 -52.41 -0.04 -1.29 16 6 C 0.52 10.04 6.64 87.66 0.58 10.63 16 7 O -0.57 -16.42 13.84 -3.03 -0.04 -16.47 16 8 N -0.70 -10.71 4.90 -435.25 -2.13 -12.84 16 9 C 0.12 2.72 3.37 46.54 0.16 2.87 16 10 H 0.09 2.30 7.74 -2.39 -0.02 2.29 16 11 C 0.04 1.02 7.49 72.67 0.54 1.56 16 12 O -0.37 -14.24 11.18 -148.98 -1.67 -15.90 16 13 C 0.09 2.86 1.75 -10.68 -0.02 2.85 16 14 C 0.12 4.39 8.20 83.38 0.68 5.07 16 15 N -0.66 -33.53 3.68 -738.89 -2.72 -36.25 16 16 C -0.28 -17.53 11.09 84.03 0.93 -16.59 16 17 H 0.05 3.31 8.05 -2.91 -0.02 3.29 16 18 C -0.09 -5.48 5.50 84.86 0.47 -5.01 16 19 N -0.97 -65.98 13.70 21.65 0.30 -65.68 16 20 Si 1.11 57.94 25.02 68.60 1.72 59.65 16 21 H -0.30 -15.98 7.11 99.48 0.71 -15.27 16 22 H -0.29 -14.58 6.46 99.48 0.64 -13.94 16 23 H -0.26 -11.66 6.70 99.48 0.67 -10.99 16 24 C 0.08 3.15 5.53 83.48 0.46 3.61 16 25 C -0.12 -2.46 6.03 31.67 0.19 -2.27 16 26 C -0.14 -0.93 6.07 31.18 0.19 -0.74 16 27 C -0.13 -0.59 7.74 31.18 0.24 -0.35 16 28 C -0.13 -1.07 7.14 31.12 0.22 -0.84 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 1.49 5.46 -2.39 -0.01 1.47 16 33 H 0.05 0.61 8.09 -2.39 -0.02 0.59 16 34 H 0.07 0.60 7.58 -2.39 -0.02 0.58 16 35 H 0.06 0.72 5.95 -2.39 -0.01 0.71 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.09 0.84 7.24 -2.39 -0.02 0.82 16 38 H 0.42 3.48 6.88 -92.71 -0.64 2.84 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.09 2.65 8.13 -2.39 -0.02 2.63 16 43 H 0.25 16.66 8.73 -92.71 -0.81 15.85 16 44 H 0.08 2.98 7.94 -2.39 -0.02 2.96 16 45 H 0.04 1.83 3.85 -2.39 -0.01 1.82 16 46 H 0.12 1.57 7.97 -2.38 -0.02 1.55 16 47 H 0.11 1.88 7.81 -2.39 -0.02 1.86 16 48 H 0.09 0.44 6.76 -2.39 -0.02 0.42 16 49 H 0.10 0.62 4.63 -2.38 -0.01 0.61 16 50 H 0.09 0.34 7.61 -2.38 -0.02 0.32 16 51 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 52 H 0.07 0.68 8.10 -2.39 -0.02 0.66 16 53 H 0.09 0.68 7.75 -2.39 -0.02 0.66 16 Total: -1.00 -84.19 394.65 1.48 -82.71 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.12 Total: 10.73 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 5.90 Total: -5.96 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -4.56 Total: -114.77 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -1.71 Total: -32.37 kcal Atomic # 14 Polarization: 57.94 SS G_CDS: 1.72 Total: 59.65 kcal Total: -84.19 1.48 -82.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502459816.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.468 kcal (2) G-P(sol) polarization free energy of solvation -84.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds