Wall clock time and date at job start Tue Mar 31 2020 20:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00407 * 2 1 4 4 C 1.50699 * 119.99480 * 180.02562 * 2 1 3 5 5 C 1.53005 * 109.47127 * 94.99706 * 4 2 1 6 6 C 1.50695 * 109.47215 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00208 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00084 * 180.02562 * 6 5 4 9 9 C 1.46923 * 120.59906 * 180.02562 * 8 6 5 10 10 C 1.53286 * 108.72541 * 234.17765 * 9 8 6 11 11 C 1.52417 * 109.44010 * 306.30138 * 10 9 8 12 12 C 1.53619 * 110.42491 * 182.61370 * 11 10 9 13 13 O 1.43886 * 107.11522 * 116.30069 * 12 11 10 14 14 C 1.44429 * 106.99124 * 26.39850 * 13 12 11 15 15 H 1.09000 * 110.60983 * 78.91996 * 14 13 12 16 16 C 1.52997 * 110.60398 * 201.72655 * 14 13 12 17 17 N 1.46498 * 109.47667 * 298.54933 * 16 14 13 18 18 C 1.36938 * 120.00325 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99830 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99863 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00213 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99972 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47165 * 90.00304 * 22 20 18 24 24 H 1.48493 * 109.47496 * 210.00522 * 22 20 18 25 25 H 1.48505 * 109.47161 * 330.00709 * 22 20 18 26 26 C 1.54312 * 110.07402 * 297.69506 * 11 10 9 27 27 C 1.52416 * 110.98942 * 59.80541 * 11 10 9 28 28 C 1.46931 * 120.59600 * 359.97438 * 8 6 5 29 29 H 1.07996 * 120.00506 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99616 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.47142 * 270.00757 * 3 2 1 32 32 H 1.09005 * 109.46965 * 30.00025 * 3 2 1 33 33 H 1.08993 * 109.47006 * 150.00373 * 3 2 1 34 34 H 1.09002 * 109.47225 * 335.00329 * 4 2 1 35 35 H 1.08995 * 109.47331 * 214.99283 * 4 2 1 36 36 H 1.09005 * 109.46800 * 59.99744 * 5 4 2 37 37 H 1.08999 * 109.47249 * 300.00434 * 5 4 2 38 38 H 1.08999 * 109.60217 * 114.40546 * 9 8 6 39 39 H 1.09004 * 109.59905 * 353.94554 * 9 8 6 40 40 H 1.08995 * 109.47439 * 66.29293 * 10 9 8 41 41 H 1.09002 * 109.47436 * 186.31536 * 10 9 8 42 42 H 1.09000 * 109.90518 * 235.67205 * 12 11 10 43 43 H 1.08997 * 109.90628 * 356.74132 * 12 11 10 44 44 H 1.09008 * 109.46905 * 58.54697 * 16 14 13 45 45 H 1.09000 * 109.47222 * 178.53929 * 16 14 13 46 46 H 0.97000 * 119.99546 * 359.97438 * 17 16 14 47 47 H 0.97007 * 120.00105 * 179.97438 * 21 20 18 48 48 H 1.08988 * 110.93145 * 338.90115 * 26 11 10 49 49 H 1.09003 * 110.92640 * 102.55509 * 26 11 10 50 50 H 1.09006 * 109.47749 * 180.19628 * 27 11 10 51 51 H 1.08999 * 109.48177 * 60.18449 * 27 11 10 52 52 H 1.09002 * 109.60078 * 245.58369 * 28 8 6 53 53 H 1.08998 * 109.59794 * 6.04912 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4272 -1.6834 -1.4378 6 6 3.1811 -2.9882 -1.4384 7 8 3.4050 -3.5597 -0.3923 8 7 3.6066 -3.5202 -2.6013 9 6 4.3423 -4.7919 -2.6172 10 6 5.6642 -4.5863 -3.3654 11 6 5.3821 -3.9895 -4.7392 12 6 6.6871 -3.8342 -5.5346 13 8 6.5869 -4.6932 -6.6846 14 6 5.1807 -4.8439 -6.9775 15 1 4.8025 -3.9679 -7.5045 16 6 4.9344 -6.1116 -7.7979 17 7 5.6478 -6.0140 -9.0738 18 6 5.5750 -7.0387 -9.9792 19 1 4.9920 -7.9192 -9.7525 20 6 6.2505 -6.9459 -11.1882 21 7 6.9613 -5.8731 -11.4643 22 14 6.1518 -8.3441 -12.4230 23 1 5.0002 -8.1201 -13.3334 24 1 7.4066 -8.3943 -13.2154 25 1 5.9699 -9.6295 -11.7019 26 6 4.5283 -4.9656 -5.5756 27 6 4.6714 -2.6469 -4.6157 28 6 3.3421 -2.8394 -3.8762 29 1 -0.5401 -0.9352 0.0004 30 1 -0.5400 0.9354 0.0004 31 1 2.2452 1.6197 -1.0277 32 1 1.4745 2.0647 0.5139 33 1 3.0160 1.1746 0.5137 34 1 1.4384 -2.0857 0.4333 35 1 2.9742 -1.1993 0.5888 36 1 3.0522 -0.9029 -1.8718 37 1 1.5165 -1.7893 -2.0273 38 1 3.7487 -5.5514 -3.1259 39 1 4.5466 -5.1089 -1.5945 40 1 6.3011 -3.9077 -2.7982 41 1 6.1685 -5.5456 -3.4826 42 1 6.8062 -2.7989 -5.8538 43 1 7.5352 -4.1322 -4.9181 44 1 5.2964 -6.9784 -7.2448 45 1 3.8664 -6.2209 -7.9862 46 1 6.1717 -5.2233 -9.2772 47 1 7.4337 -5.8084 -12.3091 48 1 4.6133 -5.9828 -5.1935 49 1 3.4862 -4.6470 -5.6020 50 1 4.4789 -2.2446 -5.6103 51 1 5.3003 -1.9526 -4.0584 52 1 2.6708 -3.4471 -4.4830 53 1 2.8864 -1.8680 -3.6843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506877209.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:33 Heat of formation + Delta-G solvation = -86.008621 kcal Electronic energy + Delta-G solvation = -29620.580501 eV Core-core repulsion = 25684.344680 eV Total energy + Delta-G solvation = -3936.235821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87658 -40.53618 -38.07713 -37.22015 -36.39085 -34.41250 -33.50231 -32.78163 -31.62792 -30.98609 -28.51759 -28.05743 -27.08576 -25.78629 -24.57818 -24.35123 -23.60749 -22.08016 -20.89855 -19.40805 -19.19295 -19.10854 -18.04076 -17.40357 -16.97974 -16.90717 -16.58279 -16.42017 -15.94871 -15.69581 -15.44691 -15.20793 -15.05146 -14.88707 -14.70796 -14.54697 -14.38281 -13.98250 -13.88691 -13.50265 -13.41210 -13.36889 -13.13158 -13.01344 -12.81944 -12.75715 -12.51603 -12.44787 -12.24057 -12.20311 -12.02038 -11.93863 -11.87667 -11.80652 -11.53746 -11.39602 -11.27437 -10.96712 -10.78736 -10.49589 -9.89471 -9.64180 -8.99276 -7.93611 -5.22950 1.32327 1.46901 1.49638 1.58041 1.62093 2.03816 2.56159 2.98824 3.39446 3.40436 3.46044 3.62061 3.73546 3.92280 3.97871 4.03804 4.06344 4.07520 4.20955 4.24533 4.31210 4.34742 4.36361 4.48617 4.53159 4.55960 4.61692 4.66426 4.71435 4.75042 4.80508 4.83587 4.86048 4.88908 4.95102 4.98593 5.00118 5.02949 5.06248 5.11485 5.16461 5.19877 5.21548 5.30363 5.34052 5.48161 5.55992 5.77800 6.00668 6.12463 6.28183 6.41341 7.16546 7.33836 8.10543 8.33991 9.30124 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025199 B = 0.001919 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.906951 B =14588.712698 C =14780.815819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.122 4.122 4 C -0.068 4.068 5 C -0.126 4.126 6 C 0.509 3.491 7 O -0.589 6.589 8 N -0.608 5.608 9 C 0.112 3.888 10 C -0.110 4.110 11 C -0.080 4.080 12 C 0.048 3.952 13 O -0.398 6.398 14 C 0.077 3.923 15 H 0.067 0.933 16 C 0.155 3.845 17 N -0.743 5.743 18 C -0.248 4.248 19 H 0.077 0.923 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.977 3.023 23 H -0.283 1.283 24 H -0.296 1.296 25 H -0.270 1.270 26 C -0.128 4.128 27 C -0.118 4.118 28 C 0.103 3.897 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.017 0.983 45 H 0.044 0.956 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.077 0.923 49 H 0.104 0.896 50 H 0.088 0.912 51 H 0.078 0.922 52 H 0.084 0.916 53 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.266 14.833 24.158 30.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.131 4.131 3 C -0.178 4.178 4 C -0.106 4.106 5 C -0.165 4.165 6 C 0.300 3.700 7 O -0.470 6.470 8 N -0.340 5.340 9 C -0.010 4.010 10 C -0.148 4.148 11 C -0.080 4.080 12 C -0.028 4.028 13 O -0.318 6.318 14 C 0.020 3.980 15 H 0.085 0.915 16 C 0.028 3.972 17 N -0.385 5.385 18 C -0.380 4.380 19 H 0.095 0.905 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.806 3.194 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.195 1.195 26 C -0.165 4.165 27 C -0.156 4.156 28 C -0.019 4.019 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.035 0.965 45 H 0.061 0.939 46 H 0.206 0.794 47 H 0.060 0.940 48 H 0.095 0.905 49 H 0.122 0.878 50 H 0.106 0.894 51 H 0.097 0.903 52 H 0.102 0.898 53 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.034 14.262 24.538 30.828 hybrid contribution 0.543 -0.629 -0.903 1.227 sum -11.491 13.633 23.635 29.606 Atomic orbital electron populations 1.23854 0.95248 1.02430 1.01853 1.21793 0.95550 0.95567 1.00205 1.20912 1.00069 0.93911 1.02924 1.20364 1.00073 0.94549 0.95596 1.21686 1.01806 0.93773 0.99257 1.21298 0.78709 0.87471 0.82548 1.90678 1.59262 1.64337 1.32751 1.48227 1.55446 1.23277 1.07058 1.21565 0.92479 0.85656 1.01335 1.21792 0.97118 1.01741 0.94138 1.21407 0.94769 0.96607 0.95228 1.23367 0.98146 0.94653 0.86681 1.89058 1.25215 1.69438 1.48065 1.23334 0.81484 0.97143 0.96085 0.91467 1.20926 0.95332 0.95149 0.85749 1.42490 1.59179 1.20803 1.16059 1.19680 1.24233 0.97652 0.96400 0.90538 1.25632 1.00517 1.00483 1.00437 1.69849 1.37394 1.30115 1.24701 0.85087 0.76610 0.78920 0.78804 1.21029 1.22221 1.19483 1.23225 1.00574 1.00392 0.92342 1.21895 0.96585 0.95203 1.01948 1.22087 0.97119 0.99323 0.83327 0.88572 0.87430 0.90329 0.91338 0.91954 0.92199 0.91860 0.86603 0.86895 0.90605 0.90506 0.91217 0.90592 0.91784 0.89954 0.96548 0.93874 0.79400 0.94034 0.90456 0.87764 0.89363 0.90297 0.89780 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.03 13.89 67.78 0.94 -1.09 16 2 C -0.13 -1.44 5.31 -16.49 -0.09 -1.53 16 3 C -0.12 -1.01 10.03 71.23 0.71 -0.29 16 4 C -0.07 -0.94 4.67 29.85 0.14 -0.80 16 5 C -0.13 -1.37 4.03 29.85 0.12 -1.25 16 6 C 0.51 9.26 7.70 87.65 0.67 9.93 16 7 O -0.59 -15.94 15.39 -3.04 -0.05 -15.99 16 8 N -0.61 -9.29 2.96 -818.46 -2.42 -11.71 16 9 C 0.11 1.97 6.13 86.39 0.53 2.50 16 10 C -0.11 -1.90 4.53 30.50 0.14 -1.76 16 11 C -0.08 -1.45 0.63 -51.91 -0.03 -1.48 16 12 C 0.05 1.19 7.03 72.19 0.51 1.69 16 13 O -0.40 -14.44 11.10 -148.98 -1.65 -16.10 16 14 C 0.08 2.45 3.42 31.32 0.11 2.56 16 15 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 16 C 0.15 6.32 6.02 86.38 0.52 6.84 16 17 N -0.74 -39.71 5.53 -343.45 -1.90 -41.61 16 18 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 19 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 20 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 21 N -0.97 -61.30 13.06 21.65 0.28 -61.02 16 22 Si 0.98 47.07 29.55 68.60 2.03 49.09 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 26 C -0.13 -2.72 4.56 31.76 0.14 -2.57 16 27 C -0.12 -1.49 4.66 30.51 0.14 -1.35 16 28 C 0.10 1.03 6.03 86.40 0.52 1.55 16 29 H 0.10 0.99 7.99 -2.91 -0.02 0.97 16 30 H 0.11 0.88 8.04 -2.91 -0.02 0.86 16 31 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.07 0.50 8.06 -2.38 -0.02 0.48 16 33 H 0.06 0.54 8.08 -2.39 -0.02 0.52 16 34 H 0.06 1.01 7.94 -2.39 -0.02 0.99 16 35 H 0.06 1.03 8.05 -2.39 -0.02 1.01 16 36 H 0.12 0.80 7.70 -2.38 -0.02 0.78 16 37 H 0.11 0.84 7.93 -2.39 -0.02 0.82 16 38 H 0.08 1.25 7.37 -2.39 -0.02 1.24 16 39 H 0.08 1.62 7.00 -2.39 -0.02 1.60 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.42 8.13 -2.39 -0.02 1.40 16 42 H 0.06 1.45 7.68 -2.39 -0.02 1.43 16 43 H 0.08 1.93 7.68 -2.39 -0.02 1.91 16 44 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.37 21.65 7.62 -92.71 -0.71 20.95 16 47 H 0.25 15.28 8.31 -92.70 -0.77 14.51 16 48 H 0.08 1.72 7.51 -2.39 -0.02 1.70 16 49 H 0.10 1.71 6.05 -2.39 -0.01 1.69 16 50 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 51 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.08 0.77 6.46 -2.39 -0.02 0.76 16 53 H 0.11 0.56 5.92 -2.39 -0.01 0.54 16 Total: -1.00 -76.30 411.38 2.85 -73.45 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.17 Total: 28.62 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 6.39 Total: -4.74 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -4.04 Total: -114.34 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.70 Total: -32.08 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.09 kcal Total: -76.30 2.85 -73.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506877209.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.555 kcal (2) G-P(sol) polarization free energy of solvation -76.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds