Wall clock time and date at job start Tue Mar 31 2020 21:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99720 * 2 1 4 4 C 1.53003 * 109.46755 * 125.00492 * 3 2 1 5 5 C 1.53003 * 109.47133 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47183 * 180.02562 * 5 4 3 7 7 O 1.21285 * 119.99856 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99904 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99900 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47060 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.33280 * 305.70184 * 10 9 8 12 12 C 1.54603 * 110.36889 * 183.45744 * 10 9 8 13 13 C 1.54002 * 103.88721 * 217.27763 * 12 10 9 14 14 C 1.53962 * 104.57499 * 0.14840 * 13 12 10 15 15 O 1.44471 * 110.36795 * 67.94364 * 10 9 8 16 16 C 1.52400 * 110.25135 * 241.59268 * 13 12 10 17 17 C 1.53290 * 109.40792 * 297.41926 * 16 13 12 18 18 N 1.46925 * 108.71779 * 306.31799 * 17 16 13 19 19 C 1.36944 * 120.57594 * 234.17829 * 18 17 16 20 20 H 1.07997 * 119.99879 * 152.45797 * 19 18 17 21 21 C 1.38816 * 119.99494 * 332.45788 * 19 18 17 22 22 N 1.31624 * 119.99361 * 159.34966 * 21 19 18 23 23 Si 1.86794 * 120.00330 * 339.35225 * 21 19 18 24 24 H 1.48500 * 109.47201 * 93.15745 * 23 21 19 25 25 H 1.48505 * 109.47101 * 213.15198 * 23 21 19 26 26 H 1.48499 * 109.47394 * 333.15156 * 23 21 19 27 27 C 1.46922 * 118.84947 * 54.16146 * 18 17 16 28 28 C 1.52411 * 110.23901 * 118.68075 * 13 12 10 29 29 H 1.08000 * 120.00085 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99986 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00085 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47565 * 5.01002 * 3 2 1 33 33 H 1.09000 * 109.47268 * 245.00364 * 3 2 1 34 34 H 1.08998 * 109.47003 * 60.00660 * 4 3 2 35 35 H 1.09000 * 109.47128 * 299.99958 * 4 3 2 36 36 H 1.08997 * 109.47039 * 59.99991 * 5 4 3 37 37 H 1.09000 * 109.47028 * 299.99956 * 5 4 3 38 38 H 0.97001 * 120.00138 * 359.97438 * 8 6 5 39 39 H 1.08997 * 109.47250 * 300.00401 * 9 8 6 40 40 H 1.09006 * 109.46665 * 59.99850 * 9 8 6 41 41 H 1.09000 * 110.54949 * 335.88513 * 12 10 9 42 42 H 1.09008 * 110.54336 * 98.53978 * 12 10 9 43 43 H 1.09012 * 110.38584 * 142.41754 * 14 13 12 44 44 H 1.09000 * 110.38900 * 264.68870 * 14 13 12 45 45 H 1.08999 * 109.48290 * 57.40055 * 16 13 12 46 46 H 1.09005 * 109.47742 * 177.43498 * 16 13 12 47 47 H 1.09000 * 109.59656 * 186.54519 * 17 16 13 48 48 H 1.09001 * 109.72111 * 66.16603 * 17 16 13 49 49 H 0.97004 * 119.99835 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.60132 * 186.06198 * 27 18 17 51 51 H 1.09006 * 109.73024 * 65.67429 * 27 18 17 52 52 H 1.08998 * 109.48117 * 182.55947 * 28 13 12 53 53 H 1.08996 * 109.48509 * 302.58635 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7996 2.6583 1.1821 6 6 4.7570 2.6855 2.3455 7 8 4.8212 1.7384 3.1003 8 7 5.5412 3.7629 2.5478 9 6 6.4716 3.7896 3.6792 10 6 7.2362 5.1147 3.6795 11 1 7.7179 5.2743 2.7149 12 6 8.2860 5.1300 4.8144 13 6 8.2571 6.5826 5.3251 14 6 7.1979 7.2794 4.4516 15 8 6.3441 6.2098 3.9833 16 6 9.6188 7.2380 5.1287 17 6 10.6682 6.4913 5.9599 18 7 10.2064 6.4253 7.3531 19 6 11.0013 6.8769 8.3727 20 1 10.5537 7.2442 9.2843 21 6 12.3825 6.8626 8.2343 22 7 13.1278 7.6391 8.9919 23 14 13.1832 5.7415 6.9728 24 1 13.3796 6.4859 5.7029 25 1 14.4988 5.2804 7.4847 26 1 12.3081 4.5670 6.7280 27 6 8.8767 5.8667 7.6335 28 6 7.8399 6.6180 6.7906 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6212 1.4027 -0.9314 34 1 3.7400 0.5066 1.0918 35 1 2.4773 1.2354 2.1130 36 1 3.0944 3.4845 1.2720 37 1 4.3573 2.7563 0.2507 38 1 5.4896 4.5205 1.9443 39 1 5.9140 3.6911 4.6105 40 1 7.1770 2.9634 3.5890 41 1 8.0012 4.4396 5.6083 42 1 9.2729 4.8785 4.4259 43 1 6.6245 7.9914 5.0455 44 1 7.6720 7.7833 3.6094 45 1 9.8934 7.1968 4.0746 46 1 9.5716 8.2780 5.4518 47 1 11.6177 7.0246 5.9144 48 1 10.7968 5.4819 5.5691 49 1 14.0930 7.6288 8.8955 50 1 8.6448 5.9880 8.6916 51 1 8.8603 4.8080 7.3748 52 1 7.7794 7.6532 7.1264 53 1 6.8658 6.1420 6.9029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569579569.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:17 Heat of formation + Delta-G solvation = -58.246945 kcal Electronic energy + Delta-G solvation = -29363.816669 eV Core-core repulsion = 25428.784685 eV Total energy + Delta-G solvation = -3935.031984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.50600 -39.74938 -37.14136 -36.38991 -34.93086 -33.41843 -32.80461 -31.33418 -30.84098 -30.52427 -27.93004 -26.98128 -25.55289 -23.72481 -22.91961 -22.47012 -21.53916 -21.10739 -20.50619 -20.10436 -18.49455 -17.33648 -16.85793 -16.65168 -16.31984 -15.78580 -15.56493 -15.32336 -15.08897 -14.99784 -14.47422 -14.30366 -13.89302 -13.74951 -13.73852 -13.60292 -13.14219 -12.95332 -12.77683 -12.46202 -12.26961 -12.23419 -12.09511 -11.91814 -11.81872 -11.48958 -11.30367 -11.17776 -11.10372 -11.08570 -10.82738 -10.68429 -10.47309 -10.13339 -10.04616 -9.93355 -9.74827 -9.70898 -9.56666 -9.42578 -9.27180 -8.62755 -6.97821 -5.96720 -3.32114 1.88739 2.45393 2.95066 3.28307 3.46123 3.48397 3.77314 4.35439 4.43342 4.49619 4.50714 4.58925 4.73858 4.80701 4.86548 4.87290 4.92310 5.00857 5.03255 5.10791 5.17930 5.24889 5.30015 5.38542 5.40447 5.42548 5.52862 5.57750 5.60196 5.73560 5.76469 5.78605 5.82245 5.90372 5.95593 6.01781 6.03873 6.15007 6.20484 6.23960 6.30407 6.37287 6.41088 6.45209 6.58831 6.64594 6.65971 6.79985 6.94612 7.28097 7.95370 8.02664 8.31577 8.93214 9.70737 10.08841 11.19415 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026890 B = 0.001902 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.046628 B =14715.270740 C =15043.987731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.141 4.141 6 C 0.509 3.491 7 O -0.542 6.542 8 N -0.727 5.727 9 C 0.127 3.873 10 C 0.063 3.937 11 H 0.071 0.929 12 C -0.138 4.138 13 C -0.077 4.077 14 C 0.054 3.946 15 O -0.372 6.372 16 C -0.121 4.121 17 C 0.127 3.873 18 N -0.604 5.604 19 C -0.259 4.259 20 H 0.085 0.915 21 C 0.023 3.977 22 N -0.909 5.909 23 Si 0.882 3.118 24 H -0.289 1.289 25 H -0.303 1.303 26 H -0.271 1.271 27 C 0.148 3.852 28 C -0.119 4.119 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.403 0.597 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.025 0.975 49 H 0.262 0.738 50 H 0.063 0.937 51 H 0.023 0.977 52 H 0.064 0.936 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.226 -7.641 -20.063 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.181 4.181 6 C 0.296 3.704 7 O -0.420 6.420 8 N -0.379 5.379 9 C 0.003 3.997 10 C 0.005 3.995 11 H 0.089 0.911 12 C -0.176 4.176 13 C -0.078 4.078 14 C -0.023 4.023 15 O -0.292 6.292 16 C -0.161 4.161 17 C 0.001 3.999 18 N -0.328 5.328 19 C -0.388 4.388 20 H 0.103 0.897 21 C -0.176 4.176 22 N -0.552 5.552 23 Si 0.713 3.287 24 H -0.217 1.217 25 H -0.232 1.232 26 H -0.196 1.196 27 C 0.022 3.978 28 C -0.158 4.158 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.237 0.763 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.043 0.957 49 H 0.072 0.928 50 H 0.081 0.919 51 H 0.041 0.959 52 H 0.083 0.917 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.235 -8.275 -19.437 29.253 hybrid contribution 0.891 -0.100 -0.950 1.307 sum -19.344 -8.375 -20.387 29.325 Atomic orbital electron populations 1.23861 0.95990 1.01833 1.01729 1.22963 0.96039 0.98595 0.99369 1.20804 0.98215 0.95539 0.98745 1.21288 0.97723 0.96162 0.98642 1.21698 0.98258 1.00779 0.97335 1.20741 0.80967 0.82148 0.86543 1.90721 1.68214 1.35491 1.47528 1.45999 1.41148 1.19795 1.30926 1.21473 0.92200 0.95927 0.90100 1.23253 0.90481 0.87073 0.98674 0.91091 1.23029 0.98982 0.97888 0.97719 1.21347 0.95780 0.94039 0.96592 1.23577 0.91836 0.90152 0.96709 1.89132 1.30404 1.23803 1.85825 1.21974 0.94387 1.00651 0.99041 1.21361 0.96375 0.96996 0.85169 1.44320 1.15421 1.71613 1.01411 1.18939 0.87605 1.35206 0.97000 0.89741 1.25282 0.96111 0.98640 0.97548 1.69842 1.05179 1.38069 1.42069 0.86957 0.78339 0.82747 0.80670 1.21735 1.23173 1.19591 1.20964 0.84876 0.94247 0.97730 1.21957 0.98673 1.01777 0.93417 0.88629 0.88580 0.87354 0.91425 0.90911 0.91008 0.91004 0.88814 0.88890 0.76293 0.90451 0.90139 0.89847 0.90010 0.89089 0.92388 0.92771 0.91342 0.91014 0.95697 0.92800 0.91888 0.95906 0.91742 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.19 14.32 29.01 0.42 -0.77 16 2 C -0.15 -0.97 9.52 -36.03 -0.34 -1.31 16 3 C -0.10 -0.55 5.66 -27.88 -0.16 -0.71 16 4 C -0.10 -0.74 4.49 -26.73 -0.12 -0.86 16 5 C -0.14 -0.92 5.70 -27.88 -0.16 -1.08 16 6 C 0.51 5.34 7.83 -10.99 -0.09 5.26 16 7 O -0.54 -8.01 15.98 5.55 0.09 -7.92 16 8 N -0.73 -6.82 5.55 -60.29 -0.33 -7.15 16 9 C 0.13 1.39 5.28 -4.04 -0.02 1.37 16 10 C 0.06 0.69 3.33 -25.89 -0.09 0.61 16 11 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 12 C -0.14 -1.81 4.96 -25.37 -0.13 -1.93 16 13 C -0.08 -1.10 0.69 -154.09 -0.11 -1.20 16 14 C 0.05 0.66 6.73 37.66 0.25 0.91 16 15 O -0.37 -4.59 11.35 -35.23 -0.40 -4.99 16 16 C -0.12 -1.98 4.64 -26.89 -0.12 -2.10 16 17 C 0.13 2.63 3.89 -3.66 -0.01 2.62 16 18 N -0.60 -13.89 2.76 -172.20 -0.47 -14.37 16 19 C -0.26 -7.14 10.03 -15.05 -0.15 -7.29 16 20 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 21 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 22 N -0.91 -27.67 13.97 55.49 0.78 -26.90 16 23 Si 0.88 22.12 24.35 -169.99 -4.14 17.98 16 24 H -0.29 -6.96 6.63 56.52 0.37 -6.59 16 25 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 26 H -0.27 -6.66 6.64 56.52 0.38 -6.28 16 27 C 0.15 2.82 6.20 -3.66 -0.02 2.80 16 28 C -0.12 -1.87 4.63 -26.88 -0.12 -1.99 16 29 H 0.10 0.51 7.84 -52.49 -0.41 0.10 16 30 H 0.10 0.50 8.06 -52.48 -0.42 0.08 16 31 H 0.11 0.66 8.06 -52.49 -0.42 0.23 16 32 H 0.07 0.35 7.79 -51.93 -0.40 -0.06 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.40 2.86 8.47 -40.82 -0.35 2.51 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.14 6.32 -51.93 -0.33 0.81 16 42 H 0.08 1.09 6.59 -51.92 -0.34 0.75 16 43 H 0.09 1.07 7.85 -51.92 -0.41 0.66 16 44 H 0.06 0.65 7.83 -51.93 -0.41 0.24 16 45 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.07 1.66 4.47 -51.93 -0.23 1.43 16 48 H 0.03 0.51 5.81 -51.93 -0.30 0.21 16 49 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 50 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 51 H 0.02 0.43 6.85 -51.93 -0.36 0.07 16 52 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 53 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 405.28 15.07 6.11 6.11 Total: -1.00 -32.72 405.28 -8.91 -41.63 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -9.47 Total: 0.74 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.06 Total: -5.14 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.03 Total: -48.41 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.31 Total: -12.91 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.72 -8.91 -41.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569579569.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.614 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds