Wall clock time and date at job start Tue Mar 31 2020 21:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99720 * 2 1 4 4 C 1.53003 * 109.46755 * 125.00492 * 3 2 1 5 5 C 1.53003 * 109.47133 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47183 * 180.02562 * 5 4 3 7 7 O 1.21285 * 119.99856 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99904 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99900 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47060 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.33280 * 305.70184 * 10 9 8 12 12 C 1.54603 * 110.36889 * 183.45744 * 10 9 8 13 13 C 1.54002 * 103.88721 * 217.27763 * 12 10 9 14 14 C 1.53962 * 104.57499 * 0.14840 * 13 12 10 15 15 O 1.44471 * 110.36795 * 67.94364 * 10 9 8 16 16 C 1.52400 * 110.25135 * 241.59268 * 13 12 10 17 17 C 1.53290 * 109.40792 * 297.41926 * 16 13 12 18 18 N 1.46925 * 108.71779 * 306.31799 * 17 16 13 19 19 C 1.36944 * 120.57594 * 234.17829 * 18 17 16 20 20 H 1.07997 * 119.99879 * 152.45797 * 19 18 17 21 21 C 1.38816 * 119.99494 * 332.45788 * 19 18 17 22 22 N 1.31624 * 119.99361 * 159.34966 * 21 19 18 23 23 Si 1.86794 * 120.00330 * 339.35225 * 21 19 18 24 24 H 1.48500 * 109.47201 * 93.15745 * 23 21 19 25 25 H 1.48505 * 109.47101 * 213.15198 * 23 21 19 26 26 H 1.48499 * 109.47394 * 333.15156 * 23 21 19 27 27 C 1.46922 * 118.84947 * 54.16146 * 18 17 16 28 28 C 1.52411 * 110.23901 * 118.68075 * 13 12 10 29 29 H 1.08000 * 120.00085 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99986 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00085 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47565 * 5.01002 * 3 2 1 33 33 H 1.09000 * 109.47268 * 245.00364 * 3 2 1 34 34 H 1.08998 * 109.47003 * 60.00660 * 4 3 2 35 35 H 1.09000 * 109.47128 * 299.99958 * 4 3 2 36 36 H 1.08997 * 109.47039 * 59.99991 * 5 4 3 37 37 H 1.09000 * 109.47028 * 299.99956 * 5 4 3 38 38 H 0.97001 * 120.00138 * 359.97438 * 8 6 5 39 39 H 1.08997 * 109.47250 * 300.00401 * 9 8 6 40 40 H 1.09006 * 109.46665 * 59.99850 * 9 8 6 41 41 H 1.09000 * 110.54949 * 335.88513 * 12 10 9 42 42 H 1.09008 * 110.54336 * 98.53978 * 12 10 9 43 43 H 1.09012 * 110.38584 * 142.41754 * 14 13 12 44 44 H 1.09000 * 110.38900 * 264.68870 * 14 13 12 45 45 H 1.08999 * 109.48290 * 57.40055 * 16 13 12 46 46 H 1.09005 * 109.47742 * 177.43498 * 16 13 12 47 47 H 1.09000 * 109.59656 * 186.54519 * 17 16 13 48 48 H 1.09001 * 109.72111 * 66.16603 * 17 16 13 49 49 H 0.97004 * 119.99835 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.60132 * 186.06198 * 27 18 17 51 51 H 1.09006 * 109.73024 * 65.67429 * 27 18 17 52 52 H 1.08998 * 109.48117 * 182.55947 * 28 13 12 53 53 H 1.08996 * 109.48509 * 302.58635 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7996 2.6583 1.1821 6 6 4.7570 2.6855 2.3455 7 8 4.8212 1.7384 3.1003 8 7 5.5412 3.7629 2.5478 9 6 6.4716 3.7896 3.6792 10 6 7.2362 5.1147 3.6795 11 1 7.7179 5.2743 2.7149 12 6 8.2860 5.1300 4.8144 13 6 8.2571 6.5826 5.3251 14 6 7.1979 7.2794 4.4516 15 8 6.3441 6.2098 3.9833 16 6 9.6188 7.2380 5.1287 17 6 10.6682 6.4913 5.9599 18 7 10.2064 6.4253 7.3531 19 6 11.0013 6.8769 8.3727 20 1 10.5537 7.2442 9.2843 21 6 12.3825 6.8626 8.2343 22 7 13.1278 7.6391 8.9919 23 14 13.1832 5.7415 6.9728 24 1 13.3796 6.4859 5.7029 25 1 14.4988 5.2804 7.4847 26 1 12.3081 4.5670 6.7280 27 6 8.8767 5.8667 7.6335 28 6 7.8399 6.6180 6.7906 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6212 1.4027 -0.9314 34 1 3.7400 0.5066 1.0918 35 1 2.4773 1.2354 2.1130 36 1 3.0944 3.4845 1.2720 37 1 4.3573 2.7563 0.2507 38 1 5.4896 4.5205 1.9443 39 1 5.9140 3.6911 4.6105 40 1 7.1770 2.9634 3.5890 41 1 8.0012 4.4396 5.6083 42 1 9.2729 4.8785 4.4259 43 1 6.6245 7.9914 5.0455 44 1 7.6720 7.7833 3.6094 45 1 9.8934 7.1968 4.0746 46 1 9.5716 8.2780 5.4518 47 1 11.6177 7.0246 5.9144 48 1 10.7968 5.4819 5.5691 49 1 14.0930 7.6288 8.8955 50 1 8.6448 5.9880 8.6916 51 1 8.8603 4.8080 7.3748 52 1 7.7794 7.6532 7.1264 53 1 6.8658 6.1420 6.9029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569579569.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:16 Heat of formation + Delta-G solvation = -80.041211 kcal Electronic energy + Delta-G solvation = -29364.761739 eV Core-core repulsion = 25428.784685 eV Total energy + Delta-G solvation = -3935.977054 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.55540 -40.63190 -38.51276 -36.91675 -35.87274 -35.02483 -33.36993 -33.14811 -32.03149 -31.76567 -28.76579 -28.28676 -26.39991 -25.39564 -24.38694 -23.09475 -22.73160 -22.37454 -21.19656 -20.62357 -19.91446 -18.59735 -18.04589 -17.64531 -17.19898 -16.98173 -16.59162 -16.50480 -16.05546 -15.91441 -15.85012 -15.30518 -15.11617 -14.99813 -14.75415 -14.49553 -14.31111 -14.26444 -14.07840 -13.71787 -13.48557 -13.22455 -13.19484 -12.81186 -12.63177 -12.61742 -12.44856 -12.42111 -12.26753 -12.10827 -12.05052 -11.75795 -11.65999 -11.61375 -11.57223 -11.18116 -11.15012 -10.85378 -10.70671 -10.57269 -10.17668 -10.10663 -8.90439 -8.16986 -5.47985 1.27714 1.40740 1.42799 1.49426 1.67732 2.21705 2.40845 2.85932 3.06483 3.35002 3.49066 3.70604 3.80917 3.84198 3.88143 3.98214 4.09044 4.12109 4.16977 4.32563 4.35351 4.38141 4.39304 4.50548 4.55531 4.63380 4.66323 4.69740 4.73442 4.74876 4.79256 4.80306 4.80829 4.89831 4.95189 4.98332 5.02013 5.08970 5.17379 5.23599 5.24056 5.24756 5.27026 5.37811 5.46121 5.52703 5.79796 5.86134 5.87936 5.92047 6.12512 6.58017 6.93125 7.28970 7.63630 8.03732 9.03185 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026890 B = 0.001902 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.046628 B =14715.270740 C =15043.987731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C -0.089 4.089 4 C -0.097 4.097 5 C -0.132 4.132 6 C 0.504 3.496 7 O -0.593 6.593 8 N -0.716 5.716 9 C 0.129 3.871 10 C 0.076 3.924 11 H 0.097 0.903 12 C -0.140 4.140 13 C -0.077 4.077 14 C 0.061 3.939 15 O -0.378 6.378 16 C -0.112 4.112 17 C 0.120 3.880 18 N -0.617 5.617 19 C -0.249 4.249 20 H 0.048 0.952 21 C -0.036 4.036 22 N -0.958 5.958 23 Si 0.948 3.052 24 H -0.271 1.271 25 H -0.314 1.314 26 H -0.262 1.262 27 C 0.143 3.857 28 C -0.109 4.109 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.417 0.583 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.057 0.943 47 H 0.046 0.954 48 H 0.035 0.965 49 H 0.261 0.739 50 H 0.048 0.952 51 H 0.034 0.966 52 H 0.054 0.946 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.808 -7.693 -23.938 33.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.185 4.185 3 C -0.126 4.126 4 C -0.136 4.136 5 C -0.171 4.171 6 C 0.292 3.708 7 O -0.474 6.474 8 N -0.369 5.369 9 C 0.005 3.995 10 C 0.018 3.982 11 H 0.114 0.886 12 C -0.178 4.178 13 C -0.078 4.078 14 C -0.015 4.015 15 O -0.298 6.298 16 C -0.151 4.151 17 C -0.005 4.005 18 N -0.342 5.342 19 C -0.379 4.379 20 H 0.066 0.934 21 C -0.230 4.230 22 N -0.605 5.605 23 Si 0.777 3.223 24 H -0.197 1.197 25 H -0.243 1.243 26 H -0.186 1.186 27 C 0.018 3.982 28 C -0.148 4.148 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.254 0.746 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.070 0.930 50 H 0.066 0.934 51 H 0.051 0.949 52 H 0.073 0.927 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.865 -8.309 -23.370 33.065 hybrid contribution 1.293 -0.087 0.347 1.342 sum -20.572 -8.396 -23.023 31.996 Atomic orbital electron populations 1.24019 0.96023 1.02477 1.01185 1.23111 0.96400 0.99058 0.99900 1.20766 0.97992 0.95425 0.98431 1.21219 0.97608 0.96340 0.98392 1.21730 0.97876 1.00838 0.96654 1.21475 0.81022 0.81399 0.86876 1.90704 1.69782 1.37383 1.49543 1.45916 1.40374 1.20083 1.30482 1.21325 0.92215 0.96086 0.89897 1.23199 0.89596 0.86511 0.98851 0.88560 1.23010 0.99841 0.96653 0.98314 1.21303 0.95410 0.95199 0.95842 1.23514 0.91097 0.89936 0.96955 1.89140 1.30719 1.24064 1.85829 1.21853 0.94017 0.99340 0.99867 1.21445 0.96804 0.97772 0.84449 1.44433 1.16113 1.72100 1.01576 1.18876 0.88190 1.33740 0.97052 0.93439 1.25911 0.96711 1.00089 1.00316 1.69978 1.05287 1.40210 1.45006 0.85890 0.76648 0.80855 0.78925 1.19745 1.24287 1.18598 1.21113 0.84022 0.95172 0.97883 1.21818 0.98163 1.00675 0.94106 0.87893 0.88160 0.87648 0.90413 0.89465 0.92630 0.93288 0.86549 0.85988 0.74580 0.92571 0.90415 0.90812 0.89845 0.88663 0.90350 0.89529 0.92416 0.93576 0.94679 0.93025 0.93350 0.94853 0.92688 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 14.32 67.78 0.97 -1.18 16 2 C -0.17 -1.94 9.52 25.64 0.24 -1.70 16 3 C -0.09 -0.83 5.66 29.85 0.17 -0.66 16 4 C -0.10 -1.32 4.49 30.60 0.14 -1.18 16 5 C -0.13 -1.35 5.70 29.85 0.17 -1.18 16 6 C 0.50 9.65 7.83 87.66 0.69 10.34 16 7 O -0.59 -17.42 15.98 -3.04 -0.05 -17.46 16 8 N -0.72 -11.42 5.55 -463.06 -2.57 -13.99 16 9 C 0.13 2.55 5.28 86.38 0.46 3.00 16 10 C 0.08 1.39 3.33 31.14 0.10 1.49 16 11 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 12 C -0.14 -3.23 4.96 31.48 0.16 -3.07 16 13 C -0.08 -1.96 0.69 -51.91 -0.04 -2.00 16 14 C 0.06 1.24 6.73 72.31 0.49 1.73 16 15 O -0.38 -7.80 11.35 -148.98 -1.69 -9.49 16 16 C -0.11 -3.32 4.64 30.49 0.14 -3.18 16 17 C 0.12 4.77 3.89 86.40 0.34 5.11 16 18 N -0.62 -28.36 2.76 -698.71 -1.93 -30.28 16 19 C -0.25 -14.13 10.03 84.03 0.84 -13.29 16 20 H 0.05 2.98 8.06 -2.91 -0.02 2.95 16 21 C -0.04 -2.09 5.23 84.86 0.44 -1.64 16 22 N -0.96 -60.45 13.97 21.65 0.30 -60.15 16 23 Si 0.95 46.21 24.35 68.60 1.67 47.88 16 24 H -0.27 -12.27 6.63 99.48 0.66 -11.61 16 25 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 26 H -0.26 -12.17 6.64 99.48 0.66 -11.51 16 27 C 0.14 5.41 6.20 86.40 0.54 5.94 16 28 C -0.11 -3.24 4.63 30.50 0.14 -3.10 16 29 H 0.10 0.93 7.84 -2.91 -0.02 0.90 16 30 H 0.10 0.94 8.06 -2.91 -0.02 0.92 16 31 H 0.11 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.08 0.58 7.79 -2.39 -0.02 0.56 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 36 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.42 4.23 8.47 -92.71 -0.79 3.44 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.07 1.85 6.32 -2.39 -0.02 1.84 16 42 H 0.08 1.92 6.59 -2.38 -0.02 1.91 16 43 H 0.10 1.89 7.85 -2.38 -0.02 1.87 16 44 H 0.08 1.33 7.83 -2.39 -0.02 1.31 16 45 H 0.09 2.04 8.12 -2.39 -0.02 2.03 16 46 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 47 H 0.05 2.07 4.47 -2.39 -0.01 2.06 16 48 H 0.04 1.34 5.81 -2.39 -0.01 1.33 16 49 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 50 H 0.05 1.92 7.93 -2.39 -0.02 1.91 16 51 H 0.03 1.21 6.85 -2.38 -0.02 1.19 16 52 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 53 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -74.21 405.28 1.72 -72.49 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.00 Total: 15.57 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 5.98 Total: -4.57 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -4.19 Total: -104.42 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -1.74 Total: -26.95 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.67 Total: 47.88 kcal Total: -74.21 1.72 -72.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569579569.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.548 kcal (2) G-P(sol) polarization free energy of solvation -74.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds