Wall clock time and date at job start Tue Mar 31 2020 19:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99771 * 2 1 4 4 C 1.52997 * 109.47081 * 125.00022 * 3 2 1 5 5 C 1.52999 * 109.46927 * 60.00267 * 4 3 2 6 6 C 1.53001 * 109.47348 * 300.00194 * 4 3 2 7 7 C 1.50703 * 109.47081 * 179.97438 * 4 3 2 8 8 O 1.21277 * 119.99984 * 1.26703 * 7 4 3 9 9 N 1.34777 * 119.99753 * 181.26296 * 7 4 3 10 10 C 1.47150 * 120.98797 * 354.12921 * 9 7 4 11 11 C 1.53301 * 108.37328 * 129.38388 * 10 9 7 12 12 O 1.42964 * 109.22966 * 52.35214 * 11 10 9 13 13 C 1.42898 * 114.20250 * 297.50378 * 12 11 10 14 14 C 1.52989 * 109.56369 * 302.52485 * 13 12 11 15 15 C 1.53198 * 109.34736 * 300.96324 * 14 13 12 16 16 N 1.46928 * 108.77388 * 305.42545 * 15 14 13 17 17 C 1.36938 * 120.64357 * 233.64997 * 16 15 14 18 18 H 1.08001 * 119.99739 * 30.06292 * 17 16 15 19 19 C 1.38814 * 120.00285 * 210.06051 * 17 16 15 20 20 N 1.31620 * 120.00048 * 206.16521 * 19 17 16 21 21 Si 1.86803 * 119.99678 * 26.17354 * 19 17 16 22 22 H 1.48499 * 109.46582 * 269.99490 * 21 19 17 23 23 H 1.48494 * 109.47343 * 29.99364 * 21 19 17 24 24 H 1.48500 * 109.46780 * 149.99786 * 21 19 17 25 25 C 1.46931 * 118.71691 * 53.92902 * 16 15 14 26 26 C 1.52998 * 109.54564 * 182.22724 * 13 12 11 27 27 C 1.47160 * 120.98363 * 174.10066 * 9 7 4 28 28 H 1.07997 * 120.00073 * 179.97438 * 1 2 3 29 29 H 1.08003 * 120.00501 * 359.97438 * 1 2 3 30 30 H 1.07995 * 119.99915 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47147 * 5.00211 * 3 2 1 32 32 H 1.08998 * 109.47303 * 245.00563 * 3 2 1 33 33 H 1.09003 * 109.47534 * 168.02801 * 5 4 3 34 34 H 1.08999 * 109.47190 * 288.02537 * 5 4 3 35 35 H 1.09000 * 109.47409 * 48.02320 * 5 4 3 36 36 H 1.08997 * 109.47035 * 310.81796 * 6 4 3 37 37 H 1.08999 * 109.46868 * 70.81765 * 6 4 3 38 38 H 1.09000 * 109.46871 * 190.81756 * 6 4 3 39 39 H 1.09000 * 109.68442 * 249.10209 * 10 9 7 40 40 H 1.08996 * 109.68676 * 9.66595 * 10 9 7 41 41 H 1.09006 * 109.51227 * 172.27431 * 11 10 9 42 42 H 1.09001 * 109.51020 * 292.37057 * 11 10 9 43 43 H 1.09000 * 109.48980 * 181.00002 * 14 13 12 44 44 H 1.08996 * 109.50855 * 60.93484 * 14 13 12 45 45 H 1.08998 * 109.58232 * 185.63903 * 15 14 13 46 46 H 1.09001 * 109.70366 * 65.28441 * 15 14 13 47 47 H 0.97000 * 119.99834 * 354.92926 * 20 19 17 48 48 H 1.08996 * 109.58916 * 65.84792 * 25 16 15 49 49 H 1.09004 * 109.58913 * 186.28163 * 25 16 15 50 50 H 1.09001 * 109.49301 * 179.00344 * 26 13 12 51 51 H 1.09004 * 109.49179 * 299.04869 * 26 13 12 52 52 H 1.09005 * 109.67100 * 110.77175 * 27 9 7 53 53 H 1.09000 * 109.67489 * 350.22940 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 4.0245 0.1731 1.0558 6 6 2.2521 1.1962 2.4890 7 6 3.7889 2.6381 1.1812 8 8 3.5543 3.4737 0.3342 9 7 4.7238 2.8764 2.1223 10 6 4.9369 1.9359 3.2338 11 6 6.4341 1.6172 3.3168 12 8 7.1735 2.8396 3.3700 13 6 7.0286 3.6628 2.2109 14 6 7.4546 2.8779 0.9687 15 6 8.9122 2.4328 1.1248 16 7 9.7397 3.6137 1.4065 17 6 10.8388 3.8949 0.6396 18 1 10.8605 3.6036 -0.4002 19 6 11.9249 4.5543 1.1985 20 7 12.7234 5.2708 0.4359 21 14 12.2534 4.4246 3.0328 22 1 11.5412 5.5179 3.7417 23 1 11.7677 3.1128 3.5311 24 1 13.7125 4.5400 3.2837 25 6 9.3688 4.4837 2.5310 26 6 7.9032 4.9097 2.3561 27 6 5.5622 4.0846 2.0684 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4028 -0.9314 33 1 4.8388 0.3112 1.7671 34 1 3.5127 -0.7657 1.2675 35 1 4.4271 0.1470 0.0432 36 1 1.4223 1.9030 2.4913 37 1 1.8649 0.1810 2.5760 38 1 2.9113 1.4071 3.3310 39 1 4.6059 2.3902 4.1677 40 1 4.3760 1.0193 3.0518 41 1 6.6326 1.0324 4.2151 42 1 6.7342 1.0472 2.4376 43 1 7.3605 3.5126 0.0876 44 1 6.8168 2.0014 0.8555 45 1 9.2508 1.9609 0.2024 46 1 8.9938 1.7242 1.9491 47 1 12.5970 5.2791 -0.5258 48 1 9.4845 3.9390 3.4680 49 1 10.0091 5.3658 2.5372 50 1 7.8057 5.5283 1.4639 51 1 7.5838 5.4783 3.2295 52 1 5.2922 4.7553 2.8842 53 1 5.4167 4.5900 1.1136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700331228.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:29 Heat of formation + Delta-G solvation = -20.204913 kcal Electronic energy + Delta-G solvation = -32031.476728 eV Core-core repulsion = 28098.094371 eV Total energy + Delta-G solvation = -3933.382358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.26312 -39.39388 -36.87022 -36.50844 -34.87305 -33.39360 -32.72546 -31.32934 -30.32782 -29.07248 -27.81673 -27.22576 -26.84024 -24.01838 -23.81375 -22.95534 -22.09754 -20.81251 -19.74316 -19.14509 -18.94783 -17.44140 -16.83427 -16.60378 -15.80496 -15.68219 -15.57485 -15.13585 -14.92535 -14.40575 -14.33957 -14.24976 -14.07289 -13.92954 -13.56091 -13.34088 -13.24766 -12.86136 -12.67560 -12.44682 -12.40166 -12.16598 -11.99949 -11.92669 -11.81599 -11.54758 -11.39064 -11.30880 -11.23678 -11.04668 -10.82085 -10.62483 -10.44955 -10.30187 -9.90094 -9.80882 -9.67204 -9.61403 -9.49494 -9.14145 -8.53142 -8.33521 -7.00943 -6.21299 -3.27559 1.95953 2.48648 2.76756 3.46009 3.58783 3.75528 3.82940 4.07994 4.35341 4.52022 4.61790 4.62578 4.73220 4.77665 4.82390 4.90323 4.95543 4.97680 5.10297 5.14526 5.16675 5.21515 5.34204 5.36338 5.44566 5.46535 5.53083 5.54033 5.55799 5.62298 5.69157 5.74395 5.78215 5.85730 5.87228 5.92284 6.08101 6.14180 6.20059 6.23996 6.32144 6.34398 6.41399 6.46963 6.61652 6.74375 6.75736 6.98524 7.23850 7.39142 8.02656 8.08914 8.49941 9.10415 9.67121 10.28245 11.14937 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025210 B = 0.003029 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.413054 B = 9242.166967 C = 9469.132306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C -0.070 4.070 4 C -0.075 4.075 5 C -0.158 4.158 6 C -0.156 4.156 7 C 0.526 3.474 8 O -0.538 6.538 9 N -0.607 5.607 10 C 0.052 3.948 11 C 0.041 3.959 12 O -0.359 6.359 13 C 0.117 3.883 14 C -0.153 4.153 15 C 0.153 3.847 16 N -0.602 5.602 17 C -0.348 4.348 18 H 0.062 0.938 19 C -0.012 4.012 20 N -0.916 5.916 21 Si 1.058 2.942 22 H -0.292 1.292 23 H -0.285 1.285 24 H -0.299 1.299 25 C 0.139 3.861 26 C -0.119 4.119 27 C 0.090 3.910 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.023 0.977 47 H 0.263 0.737 48 H 0.032 0.968 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.063 0.937 52 H 0.071 0.929 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.372 -11.720 6.175 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.165 4.165 3 C -0.108 4.108 4 C -0.078 4.078 5 C -0.215 4.215 6 C -0.213 4.213 7 C 0.314 3.686 8 O -0.415 6.415 9 N -0.341 5.341 10 C -0.070 4.070 11 C -0.037 4.037 12 O -0.277 6.277 13 C 0.077 3.923 14 C -0.192 4.192 15 C 0.026 3.974 16 N -0.326 5.326 17 C -0.477 4.477 18 H 0.080 0.920 19 C -0.214 4.214 20 N -0.555 5.555 21 Si 0.889 3.111 22 H -0.220 1.220 23 H -0.212 1.212 24 H -0.226 1.226 25 C 0.013 3.987 26 C -0.159 4.159 27 C -0.033 4.033 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.041 0.959 47 H 0.073 0.927 48 H 0.050 0.950 49 H 0.091 0.909 50 H 0.097 0.903 51 H 0.081 0.919 52 H 0.090 0.910 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.367 -10.674 7.045 25.765 hybrid contribution -1.275 -0.714 -1.417 2.035 sum -23.642 -11.388 5.628 26.838 Atomic orbital electron populations 1.23847 0.95930 1.01762 1.01743 1.22942 0.95939 0.98306 0.99308 1.20620 0.97401 0.95517 0.97226 1.20695 0.96002 0.93225 0.97896 1.22261 0.98749 0.96924 1.03520 1.22258 1.00446 1.03123 0.95431 1.20544 0.79279 0.88416 0.80380 1.90691 1.65451 1.47377 1.37932 1.48032 1.36523 1.23525 1.26009 1.23074 0.98800 0.94976 0.90197 1.22976 0.89446 0.88310 1.02990 1.88042 1.68939 1.30852 1.39905 1.21743 0.92270 0.92180 0.86065 1.22508 0.99563 0.99708 0.97422 1.20811 0.88437 0.89727 0.98399 1.44325 1.29517 1.23616 1.35119 1.20136 0.93844 1.41054 0.92617 0.92025 1.26211 0.92938 0.95670 1.06621 1.70923 1.43856 1.34347 1.06356 0.83832 0.75124 0.76344 0.75756 1.22000 1.21160 1.22647 1.21283 0.92153 0.94623 0.90670 1.22098 0.97734 0.94138 1.01938 1.22435 0.90130 0.86725 1.03965 0.88577 0.88663 0.87233 0.90773 0.90195 0.90953 0.91040 0.91611 0.91999 0.91078 0.90911 0.90569 0.86891 0.88039 0.92112 0.91232 0.92774 0.92692 0.95948 0.92670 0.94980 0.90934 0.90348 0.91866 0.91040 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 14.32 29.01 0.42 -0.93 16 2 C -0.15 -1.09 7.87 -36.02 -0.28 -1.37 16 3 C -0.07 -0.66 3.96 -27.88 -0.11 -0.77 16 4 C -0.08 -0.68 0.52 -155.66 -0.08 -0.77 16 5 C -0.16 -1.22 7.53 37.16 0.28 -0.94 16 6 C -0.16 -1.11 7.64 37.16 0.28 -0.83 16 7 C 0.53 6.77 6.49 -10.98 -0.07 6.70 16 8 O -0.54 -8.98 15.48 5.56 0.09 -8.90 16 9 N -0.61 -7.40 2.51 -172.29 -0.43 -7.83 16 10 C 0.05 0.48 4.05 -3.53 -0.01 0.47 16 11 C 0.04 0.45 6.36 37.31 0.24 0.69 16 12 O -0.36 -5.54 9.00 -35.23 -0.32 -5.86 16 13 C 0.12 1.88 0.68 -90.50 -0.06 1.82 16 14 C -0.15 -2.64 4.33 -26.63 -0.12 -2.75 16 15 C 0.15 3.14 6.28 -3.71 -0.02 3.11 16 16 N -0.60 -14.65 2.70 -172.04 -0.46 -15.12 16 17 C -0.35 -9.89 9.81 -15.06 -0.15 -10.04 16 18 H 0.06 1.88 8.06 -52.49 -0.42 1.45 16 19 C -0.01 -0.36 5.07 -17.43 -0.09 -0.45 16 20 N -0.92 -28.54 13.70 55.49 0.76 -27.78 16 21 Si 1.06 26.71 25.15 -169.99 -4.27 22.44 16 22 H -0.29 -6.93 6.60 56.52 0.37 -6.55 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 25 C 0.14 3.07 4.08 -3.48 -0.01 3.06 16 26 C -0.12 -2.15 5.12 -26.41 -0.14 -2.28 16 27 C 0.09 1.28 5.27 -3.55 -0.02 1.26 16 28 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 29 H 0.10 0.66 7.84 -52.48 -0.41 0.25 16 30 H 0.11 0.69 7.10 -52.49 -0.37 0.32 16 31 H 0.07 0.77 7.74 -51.93 -0.40 0.37 16 32 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 33 H 0.07 0.55 4.20 -51.93 -0.22 0.34 16 34 H 0.07 0.41 7.00 -51.93 -0.36 0.05 16 35 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 37 H 0.07 0.41 7.46 -51.93 -0.39 0.02 16 38 H 0.07 0.48 4.65 -51.93 -0.24 0.23 16 39 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.11 0.79 2.96 -51.93 -0.15 0.63 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.70 5.69 -51.93 -0.30 0.41 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.05 0.83 6.16 -51.93 -0.32 0.51 16 45 H 0.05 1.16 7.93 -51.93 -0.41 0.74 16 46 H 0.02 0.46 7.83 -51.93 -0.41 0.05 16 47 H 0.26 8.14 8.73 -40.82 -0.36 7.79 16 48 H 0.03 0.72 7.11 -51.93 -0.37 0.35 16 49 H 0.07 1.75 5.14 -51.93 -0.27 1.48 16 50 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 51 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 52 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 53 H 0.10 1.55 7.12 -51.93 -0.37 1.18 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -33.38 382.63 -7.64 -41.01 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.81 Total: 0.29 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 0.05 Total: -4.02 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.14 Total: -50.72 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.23 Total: -14.76 kcal Atomic # 14 Polarization: 26.71 SS G_CDS: -4.27 Total: 22.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.38 -7.64 -41.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700331228.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.809 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds