Wall clock time and date at job start Tue Mar 31 2020 19:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99771 * 2 1 4 4 C 1.52997 * 109.47081 * 125.00022 * 3 2 1 5 5 C 1.52999 * 109.46927 * 60.00267 * 4 3 2 6 6 C 1.53001 * 109.47348 * 300.00194 * 4 3 2 7 7 C 1.50703 * 109.47081 * 179.97438 * 4 3 2 8 8 O 1.21277 * 119.99984 * 1.26703 * 7 4 3 9 9 N 1.34777 * 119.99753 * 181.26296 * 7 4 3 10 10 C 1.47150 * 120.98797 * 354.12921 * 9 7 4 11 11 C 1.53301 * 108.37328 * 129.38388 * 10 9 7 12 12 O 1.42964 * 109.22966 * 52.35214 * 11 10 9 13 13 C 1.42898 * 114.20250 * 297.50378 * 12 11 10 14 14 C 1.52989 * 109.56369 * 302.52485 * 13 12 11 15 15 C 1.53198 * 109.34736 * 300.96324 * 14 13 12 16 16 N 1.46928 * 108.77388 * 305.42545 * 15 14 13 17 17 C 1.36938 * 120.64357 * 233.64997 * 16 15 14 18 18 H 1.08001 * 119.99739 * 30.06292 * 17 16 15 19 19 C 1.38814 * 120.00285 * 210.06051 * 17 16 15 20 20 N 1.31620 * 120.00048 * 206.16521 * 19 17 16 21 21 Si 1.86803 * 119.99678 * 26.17354 * 19 17 16 22 22 H 1.48499 * 109.46582 * 269.99490 * 21 19 17 23 23 H 1.48494 * 109.47343 * 29.99364 * 21 19 17 24 24 H 1.48500 * 109.46780 * 149.99786 * 21 19 17 25 25 C 1.46931 * 118.71691 * 53.92902 * 16 15 14 26 26 C 1.52998 * 109.54564 * 182.22724 * 13 12 11 27 27 C 1.47160 * 120.98363 * 174.10066 * 9 7 4 28 28 H 1.07997 * 120.00073 * 179.97438 * 1 2 3 29 29 H 1.08003 * 120.00501 * 359.97438 * 1 2 3 30 30 H 1.07995 * 119.99915 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47147 * 5.00211 * 3 2 1 32 32 H 1.08998 * 109.47303 * 245.00563 * 3 2 1 33 33 H 1.09003 * 109.47534 * 168.02801 * 5 4 3 34 34 H 1.08999 * 109.47190 * 288.02537 * 5 4 3 35 35 H 1.09000 * 109.47409 * 48.02320 * 5 4 3 36 36 H 1.08997 * 109.47035 * 310.81796 * 6 4 3 37 37 H 1.08999 * 109.46868 * 70.81765 * 6 4 3 38 38 H 1.09000 * 109.46871 * 190.81756 * 6 4 3 39 39 H 1.09000 * 109.68442 * 249.10209 * 10 9 7 40 40 H 1.08996 * 109.68676 * 9.66595 * 10 9 7 41 41 H 1.09006 * 109.51227 * 172.27431 * 11 10 9 42 42 H 1.09001 * 109.51020 * 292.37057 * 11 10 9 43 43 H 1.09000 * 109.48980 * 181.00002 * 14 13 12 44 44 H 1.08996 * 109.50855 * 60.93484 * 14 13 12 45 45 H 1.08998 * 109.58232 * 185.63903 * 15 14 13 46 46 H 1.09001 * 109.70366 * 65.28441 * 15 14 13 47 47 H 0.97000 * 119.99834 * 354.92926 * 20 19 17 48 48 H 1.08996 * 109.58916 * 65.84792 * 25 16 15 49 49 H 1.09004 * 109.58913 * 186.28163 * 25 16 15 50 50 H 1.09001 * 109.49301 * 179.00344 * 26 13 12 51 51 H 1.09004 * 109.49179 * 299.04869 * 26 13 12 52 52 H 1.09005 * 109.67100 * 110.77175 * 27 9 7 53 53 H 1.09000 * 109.67489 * 350.22940 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 4.0245 0.1731 1.0558 6 6 2.2521 1.1962 2.4890 7 6 3.7889 2.6381 1.1812 8 8 3.5543 3.4737 0.3342 9 7 4.7238 2.8764 2.1223 10 6 4.9369 1.9359 3.2338 11 6 6.4341 1.6172 3.3168 12 8 7.1735 2.8396 3.3700 13 6 7.0286 3.6628 2.2109 14 6 7.4546 2.8779 0.9687 15 6 8.9122 2.4328 1.1248 16 7 9.7397 3.6137 1.4065 17 6 10.8388 3.8949 0.6396 18 1 10.8605 3.6036 -0.4002 19 6 11.9249 4.5543 1.1985 20 7 12.7234 5.2708 0.4359 21 14 12.2534 4.4246 3.0328 22 1 11.5412 5.5179 3.7417 23 1 11.7677 3.1128 3.5311 24 1 13.7125 4.5400 3.2837 25 6 9.3688 4.4837 2.5310 26 6 7.9032 4.9097 2.3561 27 6 5.5622 4.0846 2.0684 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4028 -0.9314 33 1 4.8388 0.3112 1.7671 34 1 3.5127 -0.7657 1.2675 35 1 4.4271 0.1470 0.0432 36 1 1.4223 1.9030 2.4913 37 1 1.8649 0.1810 2.5760 38 1 2.9113 1.4071 3.3310 39 1 4.6059 2.3902 4.1677 40 1 4.3760 1.0193 3.0518 41 1 6.6326 1.0324 4.2151 42 1 6.7342 1.0472 2.4376 43 1 7.3605 3.5126 0.0876 44 1 6.8168 2.0014 0.8555 45 1 9.2508 1.9609 0.2024 46 1 8.9938 1.7242 1.9491 47 1 12.5970 5.2791 -0.5258 48 1 9.4845 3.9390 3.4680 49 1 10.0091 5.3658 2.5372 50 1 7.8057 5.5283 1.4639 51 1 7.5838 5.4783 3.2295 52 1 5.2922 4.7553 2.8842 53 1 5.4167 4.5900 1.1136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700331228.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:28 Heat of formation + Delta-G solvation = -41.751325 kcal Electronic energy + Delta-G solvation = -32032.411051 eV Core-core repulsion = 28098.094371 eV Total energy + Delta-G solvation = -3934.316680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.26653 -40.55777 -38.03405 -37.70851 -35.96968 -34.82856 -33.81907 -32.92753 -31.97308 -30.23719 -28.52018 -28.31463 -27.63504 -25.66941 -24.92363 -24.28431 -23.44695 -22.22980 -20.74988 -20.31569 -19.77386 -19.44179 -17.79665 -17.55030 -17.08563 -16.88042 -16.46602 -16.19285 -16.16102 -15.88199 -15.67724 -15.31046 -15.16587 -15.09269 -15.05896 -14.80789 -14.08306 -14.01149 -13.67433 -13.64232 -13.54382 -13.38955 -13.09759 -13.07606 -12.98275 -12.71324 -12.50201 -12.41708 -12.20504 -12.02936 -11.93611 -11.87808 -11.83877 -11.74319 -11.52991 -11.45130 -11.24113 -10.87346 -10.60170 -10.48649 -10.18057 -9.56982 -9.11850 -8.48298 -5.53706 1.40048 1.43848 1.51725 1.56291 1.76301 1.83940 2.52655 2.72644 3.06002 3.28308 3.37166 3.62157 3.67878 3.72294 3.79180 3.84953 3.93712 4.10924 4.14851 4.21447 4.24839 4.26741 4.34355 4.40862 4.49260 4.55677 4.58850 4.62276 4.67328 4.72858 4.74872 4.76089 4.80232 4.86870 4.90416 4.91836 4.96538 5.01629 5.02255 5.05758 5.13545 5.14675 5.23709 5.30189 5.32378 5.39968 5.76624 5.77995 5.92604 6.25492 6.26431 6.30602 6.91322 7.05040 7.57971 8.10867 8.82251 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025210 B = 0.003029 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.413054 B = 9242.166967 C = 9469.132306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 C -0.068 4.068 4 C -0.069 4.069 5 C -0.156 4.156 6 C -0.152 4.152 7 C 0.518 3.482 8 O -0.586 6.586 9 N -0.607 5.607 10 C 0.054 3.946 11 C 0.031 3.969 12 O -0.374 6.374 13 C 0.128 3.872 14 C -0.140 4.140 15 C 0.153 3.847 16 N -0.617 5.617 17 C -0.338 4.338 18 H 0.024 0.976 19 C -0.064 4.064 20 N -0.949 5.949 21 Si 1.102 2.898 22 H -0.267 1.267 23 H -0.271 1.271 24 H -0.303 1.303 25 C 0.136 3.864 26 C -0.116 4.116 27 C 0.097 3.903 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.076 0.924 45 H 0.039 0.961 46 H 0.037 0.963 47 H 0.248 0.752 48 H 0.042 0.958 49 H 0.050 0.950 50 H 0.064 0.936 51 H 0.091 0.909 52 H 0.086 0.914 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.951 -14.240 9.497 31.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.169 4.169 3 C -0.106 4.106 4 C -0.072 4.072 5 C -0.213 4.213 6 C -0.209 4.209 7 C 0.308 3.692 8 O -0.466 6.466 9 N -0.339 5.339 10 C -0.067 4.067 11 C -0.046 4.046 12 O -0.293 6.293 13 C 0.088 3.912 14 C -0.179 4.179 15 C 0.028 3.972 16 N -0.342 5.342 17 C -0.468 4.468 18 H 0.042 0.958 19 C -0.260 4.260 20 N -0.591 5.591 21 Si 0.927 3.073 22 H -0.193 1.193 23 H -0.196 1.196 24 H -0.231 1.231 25 C 0.011 3.989 26 C -0.155 4.155 27 C -0.026 4.026 28 H 0.132 0.868 29 H 0.108 0.892 30 H 0.145 0.855 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.060 0.940 49 H 0.068 0.932 50 H 0.083 0.917 51 H 0.109 0.891 52 H 0.104 0.896 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.993 -13.229 10.392 30.127 hybrid contribution -0.552 0.011 -2.547 2.606 sum -25.545 -13.218 7.846 29.813 Atomic orbital electron populations 1.24002 0.95857 1.02392 1.00524 1.22891 0.96035 0.97626 1.00339 1.20550 0.97149 0.96373 0.96537 1.20724 0.96013 0.91449 0.98972 1.22294 0.98680 0.97437 1.02914 1.22268 1.00079 1.04345 0.94167 1.21346 0.79147 0.89240 0.79483 1.90670 1.66964 1.49199 1.39783 1.48133 1.35788 1.23313 1.26699 1.23320 0.98025 0.95617 0.89775 1.23326 0.90038 0.86780 1.04428 1.88008 1.70140 1.32298 1.38840 1.21429 0.92792 0.91306 0.85678 1.22333 0.97660 1.00367 0.97556 1.20885 0.89574 0.88706 0.98064 1.44425 1.28924 1.25561 1.35333 1.20001 0.95360 1.39864 0.91528 0.95775 1.27404 0.92798 0.95518 1.10260 1.71040 1.45488 1.36930 1.05620 0.83262 0.74930 0.77727 0.71400 1.19327 1.19605 1.23131 1.21308 0.94261 0.93409 0.89941 1.21987 0.95457 0.95468 1.02633 1.22159 0.89318 0.87842 1.03317 0.86788 0.89234 0.85496 0.92526 0.92474 0.90481 0.88119 0.93003 0.92862 0.88781 0.89764 0.88739 0.84107 0.84882 0.92580 0.93653 0.90567 0.94247 0.94489 0.94301 0.94029 0.93194 0.91705 0.89054 0.89626 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 14.32 67.78 0.97 -1.19 16 2 C -0.15 -1.87 7.87 25.65 0.20 -1.67 16 3 C -0.07 -1.24 3.96 29.85 0.12 -1.12 16 4 C -0.07 -1.10 0.52 -52.93 -0.03 -1.13 16 5 C -0.16 -1.90 7.53 71.98 0.54 -1.36 16 6 C -0.15 -1.61 7.64 71.98 0.55 -1.06 16 7 C 0.52 12.78 6.49 87.66 0.57 13.35 16 8 O -0.59 -20.03 15.48 -3.02 -0.05 -20.07 16 9 N -0.61 -13.39 2.51 -817.40 -2.05 -15.45 16 10 C 0.05 0.76 4.05 86.36 0.35 1.11 16 11 C 0.03 0.56 6.36 72.08 0.46 1.02 16 12 O -0.37 -10.24 9.00 -148.98 -1.34 -11.58 16 13 C 0.13 3.89 0.68 -10.71 -0.01 3.88 16 14 C -0.14 -4.77 4.33 30.66 0.13 -4.63 16 15 C 0.15 6.25 6.28 86.36 0.54 6.79 16 16 N -0.62 -30.27 2.70 -698.22 -1.88 -32.15 16 17 C -0.34 -19.88 9.81 84.03 0.82 -19.06 16 18 H 0.02 1.58 8.06 -2.91 -0.02 1.55 16 19 C -0.06 -3.85 5.07 84.86 0.43 -3.41 16 20 N -0.95 -61.34 13.70 21.65 0.30 -61.04 16 21 Si 1.10 53.95 25.15 68.60 1.73 55.68 16 22 H -0.27 -11.94 6.60 99.48 0.66 -11.28 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 25 C 0.14 5.87 4.08 86.51 0.35 6.23 16 26 C -0.12 -4.04 5.12 30.80 0.16 -3.89 16 27 C 0.10 2.62 5.27 86.34 0.46 3.07 16 28 H 0.11 0.91 8.06 -2.91 -0.02 0.88 16 29 H 0.09 1.11 7.84 -2.91 -0.02 1.09 16 30 H 0.13 1.15 7.10 -2.91 -0.02 1.13 16 31 H 0.06 1.20 7.74 -2.39 -0.02 1.18 16 32 H 0.06 1.27 8.11 -2.39 -0.02 1.25 16 33 H 0.08 0.86 4.20 -2.39 -0.01 0.85 16 34 H 0.10 0.67 7.00 -2.39 -0.02 0.65 16 35 H 0.05 0.80 8.09 -2.39 -0.02 0.78 16 36 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 37 H 0.09 0.62 7.46 -2.39 -0.02 0.60 16 38 H 0.08 0.70 4.65 -2.39 -0.01 0.69 16 39 H 0.09 1.11 8.10 -2.39 -0.02 1.09 16 40 H 0.14 1.23 2.96 -2.39 -0.01 1.22 16 41 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.06 1.07 5.69 -2.39 -0.01 1.06 16 43 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 2.24 6.16 -2.39 -0.01 2.23 16 45 H 0.04 1.69 7.93 -2.39 -0.02 1.67 16 46 H 0.04 1.43 7.83 -2.39 -0.02 1.41 16 47 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 48 H 0.04 1.74 7.11 -2.39 -0.02 1.72 16 49 H 0.05 2.37 5.14 -2.39 -0.01 2.36 16 50 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 51 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 52 H 0.09 2.08 8.14 -2.38 -0.02 2.07 16 53 H 0.07 2.40 7.12 -2.39 -0.02 2.39 16 Total: -1.00 -76.88 382.63 4.12 -72.76 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.80 Total: 14.94 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 6.62 Total: -3.09 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -3.64 Total: -108.64 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.39 Total: -31.65 kcal Atomic # 14 Polarization: 53.95 SS G_CDS: 1.73 Total: 55.68 kcal Total: -76.88 4.12 -72.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700331228.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.009 kcal (2) G-P(sol) polarization free energy of solvation -76.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds