Wall clock time and date at job start Tue Mar 31 2020 19:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 342.55438 * 3 2 1 5 5 C 1.52997 * 109.47072 * 7.51316 * 4 3 2 6 6 C 1.53005 * 109.46921 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47454 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99864 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00445 * 179.97438 * 7 6 5 10 10 C 1.46919 * 120.63375 * 179.97438 * 9 7 6 11 11 C 1.53189 * 108.89614 * 233.55910 * 10 9 7 12 12 C 1.53074 * 109.29604 * 305.57884 * 11 10 9 13 13 N 1.46504 * 109.44373 * 181.23303 * 12 11 10 14 14 C 1.36935 * 119.99942 * 304.57379 * 13 12 11 15 15 H 1.08008 * 119.99991 * 321.78649 * 14 13 12 16 16 C 1.38811 * 120.00214 * 141.79403 * 14 13 12 17 17 N 1.31622 * 120.00057 * 339.27566 * 16 14 13 18 18 Si 1.86803 * 120.00195 * 159.28170 * 16 14 13 19 19 H 1.48507 * 109.47056 * 89.99690 * 18 16 14 20 20 H 1.48497 * 109.47239 * 209.99801 * 18 16 14 21 21 H 1.48496 * 109.47115 * 329.99894 * 18 16 14 22 22 C 1.46500 * 119.99977 * 124.56543 * 13 12 11 23 23 C 1.53000 * 109.46658 * 90.00558 * 22 13 12 24 24 O 1.42894 * 109.47407 * 64.99908 * 23 22 13 25 25 C 1.42905 * 114.00127 * 179.97438 * 24 23 22 26 26 C 1.53038 * 109.65785 * 61.15285 * 12 11 10 27 27 C 1.46932 * 120.62712 * 0.02562 * 9 7 6 28 28 H 1.09009 * 109.46388 * 189.93106 * 1 2 3 29 29 H 1.08995 * 109.47475 * 309.92871 * 1 2 3 30 30 H 1.08994 * 109.47058 * 69.93395 * 1 2 3 31 31 H 1.09002 * 109.46532 * 247.51142 * 4 3 2 32 32 H 1.09003 * 109.46950 * 127.51595 * 4 3 2 33 33 H 1.08992 * 109.47486 * 60.00313 * 5 4 3 34 34 H 1.08994 * 109.47378 * 299.99691 * 5 4 3 35 35 H 1.09006 * 109.47400 * 59.99713 * 6 5 4 36 36 H 1.09003 * 109.46927 * 300.00172 * 6 5 4 37 37 H 1.09001 * 109.58843 * 353.42152 * 10 9 7 38 38 H 1.09001 * 109.58426 * 113.70348 * 10 9 7 39 39 H 1.09000 * 109.49893 * 65.39024 * 11 10 9 40 40 H 1.08997 * 109.50242 * 185.48562 * 11 10 9 41 41 H 1.09000 * 109.34741 * 301.12907 * 12 11 10 42 42 H 0.96992 * 120.00121 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.46856 * 210.00187 * 22 13 12 44 44 H 1.09000 * 109.47247 * 330.00423 * 22 13 12 45 45 H 1.09002 * 109.46731 * 185.00207 * 23 22 13 46 46 H 1.09002 * 109.47298 * 304.99386 * 23 22 13 47 47 H 1.09004 * 109.47155 * 299.99767 * 25 24 23 48 48 H 1.09003 * 109.46890 * 59.99883 * 25 24 23 49 49 H 1.08998 * 109.47152 * 179.97438 * 25 24 23 50 50 H 1.09004 * 109.49800 * 178.74781 * 26 12 11 51 51 H 1.09001 * 109.52982 * 58.66530 * 26 12 11 52 52 H 1.08998 * 109.58633 * 246.15211 * 27 9 7 53 53 H 1.08995 * 109.58631 * 6.44686 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0006 0.0002 5 6 4.6281 -1.4295 -0.1883 6 6 6.1581 -1.4295 -0.1875 7 6 6.6606 -2.8380 -0.3738 8 8 5.8726 -3.7518 -0.4958 9 7 7.9856 -3.0821 -0.4060 10 6 8.4907 -4.4499 -0.5863 11 6 9.4696 -4.7708 0.5474 12 6 10.5590 -3.6965 0.5944 13 7 11.5136 -4.0161 1.6588 14 6 11.0717 -4.2035 2.9412 15 1 10.2777 -3.5860 3.3345 16 6 11.6444 -5.1871 3.7359 17 7 12.2946 -6.1870 3.1794 18 14 11.4922 -5.0915 5.5953 19 1 10.2643 -5.8055 6.0288 20 1 12.6802 -5.7244 6.2224 21 1 11.4110 -3.6688 6.0129 22 6 12.9410 -4.1354 1.3510 23 6 13.6127 -2.7699 1.5097 24 8 13.5537 -2.3663 2.8792 25 6 14.1571 -1.0970 3.1376 26 6 9.9245 -2.3317 0.8717 27 6 8.9526 -1.9854 -0.2601 28 1 -0.3632 -1.0124 0.1773 29 1 -0.3634 0.6595 0.7880 30 1 -0.3633 0.3526 -0.9652 31 1 4.4811 0.3937 0.9498 32 1 4.4815 0.6264 -0.8149 33 1 4.2650 -1.8226 -1.1379 34 1 4.2647 -2.0553 0.6267 35 1 6.5210 -1.0366 0.7623 36 1 6.5219 -0.8036 -1.0024 37 1 7.6584 -5.1532 -0.5605 38 1 9.0041 -4.5264 -1.5449 39 1 8.9345 -4.7854 1.4969 40 1 9.9243 -5.7455 0.3706 41 1 11.0790 -3.6673 -0.3631 42 1 12.6944 -6.8745 3.7347 43 1 13.4016 -4.8486 2.0346 44 1 13.0637 -4.4838 0.3255 45 1 14.6542 -2.8388 1.1957 46 1 13.0948 -2.0362 0.8920 47 1 15.2100 -1.1315 2.8576 48 1 13.6508 -0.3284 2.5536 49 1 14.0705 -0.8627 4.1986 50 1 10.7045 -1.5722 0.9267 51 1 9.3836 -2.3667 1.8173 52 1 9.5058 -1.8599 -1.1908 53 1 8.4247 -1.0622 -0.0213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716716510.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:47 Heat of formation + Delta-G solvation = -44.259937 kcal Electronic energy + Delta-G solvation = -29743.620009 eV Core-core repulsion = 25809.194547 eV Total energy + Delta-G solvation = -3934.425462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.18122 -39.20537 -38.28448 -36.67904 -36.42923 -34.28050 -33.69743 -32.43899 -31.90191 -30.43284 -29.66143 -27.55681 -27.11346 -26.26853 -24.73932 -24.14951 -22.99565 -22.22328 -21.32974 -19.89760 -18.51077 -17.93329 -17.47215 -17.17134 -16.91363 -16.70150 -16.51698 -16.48181 -15.71243 -15.63727 -15.45518 -15.18957 -14.96969 -14.73938 -14.64850 -14.50479 -14.29736 -14.06135 -13.71638 -13.43950 -13.37250 -13.26318 -13.18705 -13.05332 -12.84003 -12.71810 -12.51842 -12.40473 -12.30999 -12.20521 -12.02424 -11.84529 -11.78272 -11.53277 -11.43479 -11.06413 -10.80199 -10.61556 -10.56258 -10.37172 -10.25955 -9.56463 -8.39773 -7.69399 -5.27657 1.43797 1.47470 1.55707 1.68578 1.72801 1.79182 2.14370 2.58726 3.26417 3.37779 3.41718 3.59428 3.67005 3.99479 4.08842 4.12762 4.20667 4.30136 4.36855 4.47288 4.50555 4.52857 4.58304 4.64858 4.66790 4.67952 4.71065 4.75805 4.77915 4.82129 4.84707 4.85386 4.87290 4.88313 4.91386 4.94694 4.97294 5.05134 5.15207 5.17080 5.21545 5.28047 5.33697 5.52606 5.65635 5.72637 5.78732 5.89933 6.53330 6.55240 6.73636 6.74108 7.24416 7.32607 8.02343 8.50968 9.26563 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.002432 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.333565 B =11510.921506 C =11729.546104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.220 4.220 3 C -0.215 4.215 4 C -0.002 4.002 5 C -0.092 4.092 6 C -0.130 4.130 7 C 0.504 3.496 8 O -0.598 6.598 9 N -0.608 5.608 10 C 0.121 3.879 11 C -0.118 4.118 12 C 0.171 3.829 13 N -0.584 5.584 14 C -0.212 4.212 15 H 0.041 0.959 16 C -0.032 4.032 17 N -0.920 5.920 18 Si 0.937 3.063 19 H -0.294 1.294 20 H -0.297 1.297 21 H -0.277 1.277 22 C 0.140 3.860 23 C 0.057 3.943 24 O -0.398 6.398 25 C 0.027 3.973 26 C -0.130 4.130 27 C 0.113 3.887 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.031 0.969 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.244 0.756 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.043 0.957 46 H 0.046 0.954 47 H 0.044 0.956 48 H 0.047 0.953 49 H 0.077 0.923 50 H 0.075 0.925 51 H 0.039 0.961 52 H 0.092 0.908 53 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 17.220 -10.670 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.220 4.220 3 C -0.215 4.215 4 C -0.038 4.038 5 C -0.130 4.130 6 C -0.169 4.169 7 C 0.294 3.706 8 O -0.479 6.479 9 N -0.340 5.340 10 C -0.002 4.002 11 C -0.158 4.158 12 C 0.065 3.935 13 N -0.304 5.304 14 C -0.343 4.343 15 H 0.058 0.942 16 C -0.228 4.228 17 N -0.566 5.566 18 Si 0.767 3.233 19 H -0.222 1.222 20 H -0.224 1.224 21 H -0.202 1.202 22 C 0.014 3.986 23 C -0.021 4.021 24 O -0.317 6.317 25 C -0.070 4.070 26 C -0.170 4.170 27 C -0.009 4.009 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.134 0.866 36 H 0.150 0.850 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.096 0.904 50 H 0.094 0.906 51 H 0.058 0.942 52 H 0.110 0.890 53 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.512 16.497 -10.522 21.756 hybrid contribution 0.359 -0.722 1.383 1.601 sum -9.153 15.774 -9.138 20.399 Atomic orbital electron populations 1.19050 0.82716 1.03893 1.04226 1.23422 0.95483 1.01147 1.01961 1.23125 0.94970 1.01838 1.01551 1.18792 0.83164 0.96905 1.04950 1.21157 0.93809 0.95987 1.02036 1.21746 0.96204 0.92199 1.06762 1.21460 0.81508 0.92664 0.74952 1.90658 1.56062 1.48586 1.52631 1.48294 1.05921 1.08845 1.70908 1.21480 0.96828 0.83553 0.98353 1.22059 0.97065 0.99662 0.97034 1.20570 0.89507 0.92360 0.91091 1.43903 1.01012 1.81219 1.04221 1.18640 1.17240 1.09398 0.89039 0.94180 1.25505 1.01846 0.94947 1.00483 1.70060 1.41055 1.11164 1.34312 0.85763 0.76119 0.77337 0.84058 1.22198 1.22372 1.20208 1.20964 0.84979 0.94270 0.98426 1.23237 0.98067 0.98420 0.82408 1.88152 1.79847 1.36344 1.27368 1.22800 0.96782 0.85742 1.01670 1.22211 0.98522 0.98325 0.97969 1.22005 0.90369 0.89270 0.99245 0.89570 0.88877 0.88861 0.87961 0.87095 0.92572 0.93663 0.86608 0.84997 0.91770 0.89860 0.95016 0.93471 0.91535 0.94685 0.92068 0.92928 0.93901 0.93571 0.93742 0.93490 0.90396 0.90624 0.94248 0.88961 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.54 10.32 70.18 0.72 0.18 16 2 C -0.22 -4.64 14.13 31.13 0.44 -4.20 16 3 C -0.21 -4.67 13.34 31.13 0.42 -4.26 16 4 C 0.00 -0.03 5.70 28.79 0.16 0.13 16 5 C -0.09 -1.87 4.46 30.59 0.14 -1.74 16 6 C -0.13 -2.26 4.05 29.85 0.12 -2.14 16 7 C 0.50 14.22 7.70 87.66 0.67 14.89 16 8 O -0.60 -22.54 15.39 -3.04 -0.05 -22.59 16 9 N -0.61 -16.44 2.97 -819.01 -2.44 -18.87 16 10 C 0.12 3.82 6.43 86.36 0.55 4.38 16 11 C -0.12 -4.59 5.24 30.68 0.16 -4.43 16 12 C 0.17 6.21 2.59 45.03 0.12 6.33 16 13 N -0.58 -26.55 2.34 -677.81 -1.58 -28.14 16 14 C -0.21 -11.21 7.60 84.03 0.64 -10.57 16 15 H 0.04 2.21 7.09 -2.91 -0.02 2.19 16 16 C -0.03 -1.78 4.97 84.86 0.42 -1.36 16 17 N -0.92 -53.89 11.47 21.65 0.25 -53.64 16 18 Si 0.94 46.73 29.60 68.60 2.03 48.76 16 19 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 20 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 21 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 22 C 0.14 6.11 5.70 86.38 0.49 6.61 16 23 C 0.06 2.08 6.28 71.98 0.45 2.53 16 24 O -0.40 -16.33 10.18 -148.98 -1.52 -17.85 16 25 C 0.03 0.78 11.01 113.37 1.25 2.03 16 26 C -0.13 -3.84 5.38 30.66 0.16 -3.68 16 27 C 0.11 2.30 6.34 86.35 0.55 2.85 16 28 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 34 H 0.04 1.17 8.10 -2.39 -0.02 1.15 16 35 H 0.12 1.63 7.70 -2.38 -0.02 1.61 16 36 H 0.13 1.33 7.94 -2.39 -0.02 1.31 16 37 H 0.06 2.28 7.01 -2.39 -0.02 2.27 16 38 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.03 1.45 7.61 -2.39 -0.02 1.43 16 40 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.07 2.16 7.77 -2.39 -0.02 2.14 16 42 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 43 H 0.06 3.25 5.54 -2.39 -0.01 3.23 16 44 H 0.05 2.08 7.88 -2.39 -0.02 2.06 16 45 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 48 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 51 H 0.04 1.39 7.24 -2.39 -0.02 1.38 16 52 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 53 H 0.11 1.54 5.93 -2.39 -0.01 1.53 16 Total: -1.00 -75.81 424.72 5.03 -70.77 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.86 Total: 13.99 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 7.47 Total: 7.57 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -3.77 Total: -100.66 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -1.56 Total: -40.43 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -75.81 5.03 -70.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716716510.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.514 kcal (2) G-P(sol) polarization free energy of solvation -75.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds