Wall clock time and date at job start Tue Mar 31 2020 20:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00355 * 2 1 4 4 C 1.53000 * 109.47092 * 124.99677 * 3 2 1 5 5 C 1.52996 * 109.47243 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47275 * 180.02562 * 5 4 3 7 7 O 1.21276 * 119.99938 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99998 * 180.02562 * 6 5 4 9 9 C 1.46935 * 120.58809 * 180.02562 * 8 6 5 10 10 C 1.53286 * 108.71973 * 125.79917 * 9 8 6 11 11 C 1.52429 * 109.41681 * 53.71646 * 10 9 8 12 12 C 1.53597 * 110.44215 * 62.97552 * 11 10 9 13 13 O 1.43888 * 107.11679 * 120.49842 * 12 11 10 14 14 C 1.44429 * 106.99536 * 333.63115 * 13 12 11 15 15 H 1.09004 * 110.60598 * 281.07693 * 14 13 12 16 16 C 1.52999 * 110.60924 * 158.26618 * 14 13 12 17 17 N 1.46498 * 109.47072 * 66.45258 * 16 14 13 18 18 C 1.36943 * 119.99727 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00392 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99586 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00460 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00129 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00122 * 22 20 18 26 26 C 1.54319 * 110.03985 * 178.05524 * 11 10 9 27 27 C 1.52424 * 110.98372 * 300.12359 * 11 10 9 28 28 C 1.46936 * 120.58690 * 359.97438 * 8 6 5 29 29 H 1.07999 * 120.00250 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.99585 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99585 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47387 * 4.99960 * 3 2 1 33 33 H 1.09000 * 109.47226 * 244.99325 * 3 2 1 34 34 H 1.09004 * 109.46882 * 60.00367 * 4 3 2 35 35 H 1.08996 * 109.47394 * 300.00331 * 4 3 2 36 36 H 1.08998 * 109.47293 * 60.00249 * 5 4 3 37 37 H 1.09004 * 109.47407 * 300.00158 * 5 4 3 38 38 H 1.08997 * 109.59069 * 6.02441 * 9 8 6 39 39 H 1.09005 * 109.59293 * 245.57009 * 9 8 6 40 40 H 1.08998 * 109.47837 * 293.73202 * 10 9 8 41 41 H 1.08996 * 109.48869 * 173.70953 * 10 9 8 42 42 H 1.09000 * 109.91332 * 1.12600 * 12 11 10 43 43 H 1.09003 * 110.06685 * 239.94965 * 12 11 10 44 44 H 1.09000 * 109.46925 * 306.45082 * 16 14 13 45 45 H 1.09007 * 109.47238 * 186.45107 * 16 14 13 46 46 H 0.96998 * 120.00095 * 359.97438 * 17 16 14 47 47 H 0.97001 * 119.99952 * 359.97438 * 21 20 18 48 48 H 1.08998 * 110.93120 * 143.79105 * 26 11 10 49 49 H 1.08997 * 110.92953 * 20.12586 * 26 11 10 50 50 H 1.08996 * 109.47837 * 179.84517 * 27 11 10 51 51 H 1.09002 * 109.48037 * 299.88753 * 27 11 10 52 52 H 1.09000 * 109.59545 * 353.96394 * 28 8 6 53 53 H 1.09003 * 109.59165 * 114.42286 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.8005 2.6576 1.1813 6 6 4.7579 2.6849 2.3449 7 8 4.8212 1.7383 3.1003 8 7 5.5429 3.7617 2.5466 9 6 6.4812 3.8018 3.6765 10 6 7.8843 4.1078 3.1403 11 6 7.8388 5.3766 2.2967 12 6 7.4270 6.5793 3.1587 13 8 8.4996 7.5360 3.0908 14 6 9.7088 6.7957 2.8154 15 1 10.0854 6.3246 3.7234 16 6 10.7725 7.7098 2.2041 17 7 11.1939 8.7009 3.1973 18 6 12.1444 9.6324 2.8744 19 1 12.5837 9.6361 1.8878 20 6 12.5433 10.5718 3.8153 21 7 12.0083 10.5670 5.0179 22 14 13.8404 11.8419 3.3752 23 1 14.0870 12.7234 4.5446 24 1 13.3640 12.6600 2.2310 25 1 15.1010 11.1525 2.9998 26 6 9.2539 5.7252 1.7893 27 6 6.8859 5.2146 1.1181 28 6 5.4763 4.9159 1.6397 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4025 -0.9313 34 1 3.7399 0.5064 1.0921 35 1 2.4772 1.2355 2.1130 36 1 3.0960 3.4845 1.2707 37 1 4.3585 2.7547 0.2499 38 1 6.4856 2.8364 4.1824 39 1 6.1788 4.5819 4.3753 40 1 8.2283 3.2753 2.5265 41 1 8.5696 4.2510 3.9756 42 1 7.2770 6.2625 4.1907 43 1 6.5100 7.0219 2.7695 44 1 10.3572 8.2201 1.3351 45 1 11.6323 7.1133 1.8987 46 1 10.7991 8.6979 4.0833 47 1 11.3350 9.9072 5.2466 48 1 9.2149 6.1422 0.7830 49 1 9.9055 4.8521 1.8226 50 1 6.8702 6.1349 0.5343 51 1 7.2226 4.3905 0.4891 52 1 4.8180 4.6852 0.8021 53 1 5.0951 5.7830 2.1791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725347752.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:37 Heat of formation + Delta-G solvation = -65.544272 kcal Electronic energy + Delta-G solvation = -29307.356165 eV Core-core repulsion = 25372.007745 eV Total energy + Delta-G solvation = -3935.348420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.08375 -39.65273 -37.15532 -36.33830 -34.77625 -33.64279 -32.86649 -31.72787 -31.53487 -29.53165 -27.97253 -26.84131 -25.19760 -23.91704 -23.85558 -22.61857 -22.07630 -20.84761 -20.37162 -20.01894 -18.51749 -17.43243 -17.21451 -16.48330 -16.30720 -16.16874 -15.75243 -15.38726 -15.15499 -14.85629 -14.47923 -14.22142 -14.05495 -13.81477 -13.68734 -13.59996 -13.39123 -13.19361 -12.98037 -12.84639 -12.60184 -12.19296 -12.10211 -12.05397 -11.91476 -11.67718 -11.50867 -11.32165 -11.27753 -11.14257 -10.72310 -10.69524 -10.54784 -10.52878 -10.46493 -10.04845 -9.93435 -9.75802 -9.39454 -9.11491 -8.93635 -8.84777 -6.94237 -6.04905 -3.03648 1.84726 2.31909 2.63784 3.54214 3.58536 3.75941 3.99308 4.07380 4.23616 4.26978 4.34750 4.50588 4.55565 4.68530 4.70942 4.74324 4.80513 4.81927 4.92217 4.95576 5.04325 5.05284 5.11767 5.18620 5.20417 5.25944 5.33260 5.35466 5.40994 5.48100 5.49926 5.62214 5.65136 5.68330 5.70073 5.72307 5.79332 5.84530 5.89357 5.93744 6.00697 6.03534 6.16659 6.19620 6.22207 6.33233 6.50563 6.68521 7.05467 7.22305 7.84385 7.85864 8.82249 9.29707 10.16212 10.31742 11.44022 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.039948 B = 0.001716 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.737773 B =16316.887809 C =16527.426454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.141 4.141 6 C 0.514 3.486 7 O -0.543 6.543 8 N -0.611 5.611 9 C 0.108 3.892 10 C -0.119 4.119 11 C -0.091 4.091 12 C 0.053 3.947 13 O -0.359 6.359 14 C 0.072 3.928 15 H 0.067 0.933 16 C 0.166 3.834 17 N -0.740 5.740 18 C -0.333 4.333 19 H 0.063 0.937 20 C -0.046 4.046 21 N -0.944 5.944 22 Si 1.081 2.919 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.296 1.296 26 C -0.137 4.137 27 C -0.119 4.119 28 C 0.103 3.897 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.026 0.974 45 H 0.031 0.969 46 H 0.370 0.630 47 H 0.256 0.744 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.071 0.929 52 H 0.088 0.912 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.054 -20.061 -11.205 31.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.181 4.181 6 C 0.303 3.697 7 O -0.420 6.420 8 N -0.345 5.345 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.092 4.092 12 C -0.024 4.024 13 O -0.278 6.278 14 C 0.014 3.986 15 H 0.085 0.915 16 C 0.038 3.962 17 N -0.385 5.385 18 C -0.464 4.464 19 H 0.082 0.918 20 C -0.243 4.243 21 N -0.589 5.589 22 Si 0.912 3.088 23 H -0.210 1.210 24 H -0.223 1.223 25 H -0.223 1.223 26 C -0.175 4.175 27 C -0.157 4.157 28 C -0.020 4.020 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.044 0.956 45 H 0.049 0.951 46 H 0.203 0.797 47 H 0.067 0.933 48 H 0.099 0.901 49 H 0.098 0.902 50 H 0.102 0.898 51 H 0.089 0.911 52 H 0.106 0.894 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.059 -19.024 -10.415 29.542 hybrid contribution -0.960 -1.476 -0.463 1.820 sum -21.019 -20.500 -10.878 31.311 Atomic orbital electron populations 1.23862 0.95986 1.01851 1.01662 1.22954 0.96036 0.98571 0.99429 1.20801 0.98197 0.95563 0.98735 1.21294 0.97704 0.96141 0.98644 1.21740 0.98171 1.00704 0.97445 1.20740 0.80915 0.81621 0.86435 1.90695 1.68485 1.35154 1.47712 1.48154 1.39824 1.17361 1.29180 1.21679 0.88087 1.03435 0.88188 1.21902 0.96738 0.96936 1.00185 1.21490 0.96027 0.95793 0.95861 1.23258 0.91896 0.88817 0.98470 1.89084 1.15964 1.30014 1.92708 1.23459 0.86789 0.91787 0.96564 0.91533 1.20633 0.92367 0.90342 0.92820 1.42276 1.48332 1.35656 1.12266 1.20032 1.16394 1.10243 0.99696 0.91850 1.25778 1.03668 1.00744 0.94120 1.70856 1.29895 1.38153 1.20006 0.83236 0.74895 0.75696 0.74997 1.21022 1.22304 1.22302 1.23177 0.94590 0.99395 1.00319 1.21873 0.93809 1.02873 0.97168 1.21886 0.97938 0.88646 0.93534 0.88569 0.88618 0.87367 0.91417 0.90872 0.91045 0.91059 0.88846 0.88799 0.88773 0.91165 0.91112 0.90172 0.92636 0.90232 0.95615 0.95124 0.79658 0.93305 0.90095 0.90243 0.89843 0.91063 0.89380 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.10 14.32 29.02 0.42 -0.69 16 2 C -0.15 -0.90 9.52 -36.03 -0.34 -1.25 16 3 C -0.10 -0.50 5.66 -27.88 -0.16 -0.66 16 4 C -0.10 -0.68 4.49 -26.73 -0.12 -0.80 16 5 C -0.14 -0.86 4.04 -27.88 -0.11 -0.97 16 6 C 0.51 4.99 7.70 -10.99 -0.08 4.91 16 7 O -0.54 -7.37 15.39 5.56 0.09 -7.28 16 8 N -0.61 -5.30 2.96 -172.66 -0.51 -5.81 16 9 C 0.11 1.02 6.13 -3.66 -0.02 1.00 16 10 C -0.12 -1.12 4.59 -26.88 -0.12 -1.25 16 11 C -0.09 -0.92 0.61 -154.09 -0.09 -1.01 16 12 C 0.05 0.65 6.15 37.47 0.23 0.88 16 13 O -0.36 -6.38 11.22 -35.23 -0.40 -6.78 16 14 C 0.07 1.19 3.38 -25.62 -0.09 1.11 16 15 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 16 C 0.17 3.48 6.00 -4.04 -0.02 3.45 16 17 N -0.74 -19.66 5.59 -59.91 -0.33 -19.99 16 18 C -0.33 -9.76 9.99 -15.06 -0.15 -9.91 16 19 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.05 -1.36 5.50 -17.43 -0.10 -1.46 16 21 N -0.94 -30.11 13.70 55.49 0.76 -29.35 16 22 Si 1.08 26.47 29.92 -169.99 -5.09 21.38 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 26 C -0.14 -1.64 5.67 -24.92 -0.14 -1.79 16 27 C -0.12 -0.92 4.62 -26.90 -0.12 -1.05 16 28 C 0.10 0.67 6.03 -3.68 -0.02 0.65 16 29 H 0.10 0.46 8.06 -52.49 -0.42 0.04 16 30 H 0.10 0.48 7.84 -52.49 -0.41 0.07 16 31 H 0.11 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.07 0.32 7.79 -51.93 -0.40 -0.09 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.57 8.10 -51.93 -0.42 0.14 16 35 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.09 0.42 7.93 -51.93 -0.41 0.01 16 37 H 0.09 0.42 7.70 -51.93 -0.40 0.02 16 38 H 0.09 1.00 7.00 -51.93 -0.36 0.64 16 39 H 0.07 0.64 6.90 -51.93 -0.36 0.28 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.66 6.61 -51.93 -0.34 0.32 16 43 H 0.08 0.87 6.46 -51.93 -0.34 0.54 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.37 10.20 6.50 -40.82 -0.27 9.94 16 47 H 0.26 8.11 6.77 -40.82 -0.28 7.83 16 48 H 0.08 0.96 7.75 -51.93 -0.40 0.55 16 49 H 0.08 0.86 7.83 -51.93 -0.41 0.45 16 50 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.09 0.38 5.92 -51.93 -0.31 0.07 16 53 H 0.07 0.48 6.81 -51.93 -0.35 0.13 16 LS Contribution 409.59 15.07 6.17 6.17 Total: -1.00 -35.83 409.59 -9.68 -45.51 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -9.32 Total: 4.97 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -1.06 Total: -8.82 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.09 Total: -55.16 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.31 Total: -14.06 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -5.09 Total: 21.38 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.83 -9.68 -45.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725347752.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.033 kcal (2) G-P(sol) polarization free energy of solvation -35.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds