Wall clock time and date at job start Tue Mar 31 2020 20:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00355 * 2 1 4 4 C 1.53000 * 109.47092 * 124.99677 * 3 2 1 5 5 C 1.52996 * 109.47243 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47275 * 180.02562 * 5 4 3 7 7 O 1.21276 * 119.99938 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99998 * 180.02562 * 6 5 4 9 9 C 1.46935 * 120.58809 * 180.02562 * 8 6 5 10 10 C 1.53286 * 108.71973 * 125.79917 * 9 8 6 11 11 C 1.52429 * 109.41681 * 53.71646 * 10 9 8 12 12 C 1.53597 * 110.44215 * 62.97552 * 11 10 9 13 13 O 1.43888 * 107.11679 * 120.49842 * 12 11 10 14 14 C 1.44429 * 106.99536 * 333.63115 * 13 12 11 15 15 H 1.09004 * 110.60598 * 281.07693 * 14 13 12 16 16 C 1.52999 * 110.60924 * 158.26618 * 14 13 12 17 17 N 1.46498 * 109.47072 * 66.45258 * 16 14 13 18 18 C 1.36943 * 119.99727 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00392 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99586 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00460 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00129 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00122 * 22 20 18 26 26 C 1.54319 * 110.03985 * 178.05524 * 11 10 9 27 27 C 1.52424 * 110.98372 * 300.12359 * 11 10 9 28 28 C 1.46936 * 120.58690 * 359.97438 * 8 6 5 29 29 H 1.07999 * 120.00250 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.99585 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99585 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47387 * 4.99960 * 3 2 1 33 33 H 1.09000 * 109.47226 * 244.99325 * 3 2 1 34 34 H 1.09004 * 109.46882 * 60.00367 * 4 3 2 35 35 H 1.08996 * 109.47394 * 300.00331 * 4 3 2 36 36 H 1.08998 * 109.47293 * 60.00249 * 5 4 3 37 37 H 1.09004 * 109.47407 * 300.00158 * 5 4 3 38 38 H 1.08997 * 109.59069 * 6.02441 * 9 8 6 39 39 H 1.09005 * 109.59293 * 245.57009 * 9 8 6 40 40 H 1.08998 * 109.47837 * 293.73202 * 10 9 8 41 41 H 1.08996 * 109.48869 * 173.70953 * 10 9 8 42 42 H 1.09000 * 109.91332 * 1.12600 * 12 11 10 43 43 H 1.09003 * 110.06685 * 239.94965 * 12 11 10 44 44 H 1.09000 * 109.46925 * 306.45082 * 16 14 13 45 45 H 1.09007 * 109.47238 * 186.45107 * 16 14 13 46 46 H 0.96998 * 120.00095 * 359.97438 * 17 16 14 47 47 H 0.97001 * 119.99952 * 359.97438 * 21 20 18 48 48 H 1.08998 * 110.93120 * 143.79105 * 26 11 10 49 49 H 1.08997 * 110.92953 * 20.12586 * 26 11 10 50 50 H 1.08996 * 109.47837 * 179.84517 * 27 11 10 51 51 H 1.09002 * 109.48037 * 299.88753 * 27 11 10 52 52 H 1.09000 * 109.59545 * 353.96394 * 28 8 6 53 53 H 1.09003 * 109.59165 * 114.42286 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.8005 2.6576 1.1813 6 6 4.7579 2.6849 2.3449 7 8 4.8212 1.7383 3.1003 8 7 5.5429 3.7617 2.5466 9 6 6.4812 3.8018 3.6765 10 6 7.8843 4.1078 3.1403 11 6 7.8388 5.3766 2.2967 12 6 7.4270 6.5793 3.1587 13 8 8.4996 7.5360 3.0908 14 6 9.7088 6.7957 2.8154 15 1 10.0854 6.3246 3.7234 16 6 10.7725 7.7098 2.2041 17 7 11.1939 8.7009 3.1973 18 6 12.1444 9.6324 2.8744 19 1 12.5837 9.6361 1.8878 20 6 12.5433 10.5718 3.8153 21 7 12.0083 10.5670 5.0179 22 14 13.8404 11.8419 3.3752 23 1 14.0870 12.7234 4.5446 24 1 13.3640 12.6600 2.2310 25 1 15.1010 11.1525 2.9998 26 6 9.2539 5.7252 1.7893 27 6 6.8859 5.2146 1.1181 28 6 5.4763 4.9159 1.6397 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4025 -0.9313 34 1 3.7399 0.5064 1.0921 35 1 2.4772 1.2355 2.1130 36 1 3.0960 3.4845 1.2707 37 1 4.3585 2.7547 0.2499 38 1 6.4856 2.8364 4.1824 39 1 6.1788 4.5819 4.3753 40 1 8.2283 3.2753 2.5265 41 1 8.5696 4.2510 3.9756 42 1 7.2770 6.2625 4.1907 43 1 6.5100 7.0219 2.7695 44 1 10.3572 8.2201 1.3351 45 1 11.6323 7.1133 1.8987 46 1 10.7991 8.6979 4.0833 47 1 11.3350 9.9072 5.2466 48 1 9.2149 6.1422 0.7830 49 1 9.9055 4.8521 1.8226 50 1 6.8702 6.1349 0.5343 51 1 7.2226 4.3905 0.4891 52 1 4.8180 4.6852 0.8021 53 1 5.0951 5.7830 2.1791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725347752.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:36 Heat of formation + Delta-G solvation = -88.322467 kcal Electronic energy + Delta-G solvation = -29308.343902 eV Core-core repulsion = 25372.007745 eV Total energy + Delta-G solvation = -3936.336157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.92508 -40.56626 -38.10465 -36.87031 -36.67817 -34.54599 -33.58635 -33.40421 -32.17969 -31.00182 -28.76987 -27.67127 -26.65844 -25.20288 -24.55315 -24.09939 -22.76594 -22.19148 -20.92941 -20.61819 -19.40903 -19.27826 -18.15396 -17.44820 -17.13112 -17.03818 -16.74048 -16.41259 -16.03699 -15.91208 -15.77599 -15.36583 -15.22828 -14.86952 -14.61860 -14.56223 -14.34157 -14.15154 -13.99398 -13.76566 -13.47324 -13.28393 -13.04685 -12.73425 -12.61465 -12.57911 -12.49884 -12.41226 -12.34254 -12.24797 -11.90906 -11.78818 -11.73351 -11.62487 -11.44631 -11.38994 -11.17803 -10.96643 -10.78243 -10.62248 -10.18347 -9.67084 -9.13365 -8.42027 -5.35220 1.42141 1.57971 1.61873 1.69115 1.85503 1.98911 2.70949 2.87656 3.34326 3.39368 3.46643 3.54603 3.72384 3.78532 3.85482 3.98776 4.02131 4.07027 4.10715 4.18273 4.23428 4.29233 4.31404 4.37319 4.46899 4.50993 4.53614 4.61159 4.66556 4.68154 4.72508 4.74342 4.79184 4.81595 4.88222 4.93731 4.95587 4.98753 5.01743 5.07843 5.12063 5.20948 5.23340 5.26676 5.39977 5.52882 5.54983 5.79254 5.91430 6.00769 6.39907 6.46677 7.07537 7.15991 7.97828 8.09995 9.09873 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.039948 B = 0.001716 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.737773 B =16316.887809 C =16527.426454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.089 4.089 4 C -0.096 4.096 5 C -0.134 4.134 6 C 0.507 3.493 7 O -0.591 6.591 8 N -0.609 5.609 9 C 0.109 3.891 10 C -0.112 4.112 11 C -0.080 4.080 12 C 0.047 3.953 13 O -0.397 6.397 14 C 0.075 3.925 15 H 0.057 0.943 16 C 0.162 3.838 17 N -0.756 5.756 18 C -0.340 4.340 19 H 0.069 0.931 20 C -0.106 4.106 21 N -0.974 5.974 22 Si 1.132 2.868 23 H -0.292 1.292 24 H -0.277 1.277 25 H -0.274 1.274 26 C -0.125 4.125 27 C -0.115 4.115 28 C 0.101 3.899 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.097 0.903 44 H 0.022 0.978 45 H 0.040 0.960 46 H 0.360 0.640 47 H 0.242 0.758 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.090 0.910 51 H 0.082 0.918 52 H 0.121 0.879 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.908 -20.102 -13.869 32.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.184 4.184 3 C -0.126 4.126 4 C -0.134 4.134 5 C -0.173 4.173 6 C 0.298 3.702 7 O -0.472 6.472 8 N -0.342 5.342 9 C -0.014 4.014 10 C -0.151 4.151 11 C -0.081 4.081 12 C -0.029 4.029 13 O -0.317 6.317 14 C 0.017 3.983 15 H 0.075 0.925 16 C 0.036 3.964 17 N -0.400 5.400 18 C -0.471 4.471 19 H 0.087 0.913 20 C -0.297 4.297 21 N -0.622 5.622 22 Si 0.955 3.045 23 H -0.218 1.218 24 H -0.203 1.203 25 H -0.200 1.200 26 C -0.163 4.163 27 C -0.153 4.153 28 C -0.021 4.021 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.115 0.885 44 H 0.040 0.960 45 H 0.058 0.942 46 H 0.192 0.808 47 H 0.052 0.948 48 H 0.107 0.893 49 H 0.112 0.888 50 H 0.109 0.891 51 H 0.100 0.900 52 H 0.139 0.861 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.933 -19.089 -13.136 31.227 hybrid contribution -0.742 -1.515 0.374 1.728 sum -21.676 -20.604 -12.761 32.515 Atomic orbital electron populations 1.24015 0.96028 1.02469 1.01171 1.23102 0.96381 0.99047 0.99912 1.20764 0.97992 0.95440 0.98420 1.21211 0.97536 0.96237 0.98410 1.21789 0.97863 1.00914 0.96720 1.21441 0.81041 0.80934 0.86788 1.90679 1.69966 1.36961 1.49611 1.48246 1.39121 1.17819 1.28982 1.21563 0.88500 1.02527 0.88763 1.21825 0.96542 0.96774 0.99918 1.21414 0.95459 0.94732 0.96449 1.23502 0.91065 0.89088 0.99270 1.89035 1.17261 1.32394 1.93006 1.23309 0.85864 0.91762 0.97332 0.92544 1.20828 0.93974 0.89896 0.91735 1.42532 1.48040 1.36506 1.12937 1.20451 1.16388 1.10449 0.99797 0.91314 1.27356 1.05580 1.03094 0.93644 1.70982 1.30974 1.38718 1.21502 0.82601 0.73280 0.73562 0.75020 1.21807 1.20276 1.20022 1.23129 0.95842 0.98226 0.99135 1.21867 0.93674 1.03725 0.96039 1.22091 0.97876 0.87929 0.94171 0.88192 0.87892 0.87686 0.90358 0.89551 0.92745 0.93174 0.86425 0.86174 0.90450 0.91088 0.90649 0.90979 0.92729 0.88514 0.96046 0.94234 0.80841 0.94811 0.89340 0.88752 0.89115 0.89950 0.86120 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 14.32 67.78 0.97 -1.03 16 2 C -0.17 -1.80 9.52 25.65 0.24 -1.55 16 3 C -0.09 -0.74 5.66 29.85 0.17 -0.57 16 4 C -0.10 -1.18 4.49 30.59 0.14 -1.05 16 5 C -0.13 -1.23 4.04 29.85 0.12 -1.11 16 6 C 0.51 9.07 7.70 87.66 0.67 9.74 16 7 O -0.59 -16.16 15.39 -3.02 -0.05 -16.21 16 8 N -0.61 -9.27 2.96 -818.57 -2.43 -11.70 16 9 C 0.11 1.99 6.13 86.39 0.53 2.51 16 10 C -0.11 -1.98 4.59 30.50 0.14 -1.84 16 11 C -0.08 -1.45 0.61 -51.91 -0.03 -1.48 16 12 C 0.05 1.11 6.15 72.18 0.44 1.56 16 13 O -0.40 -14.13 11.22 -148.98 -1.67 -15.80 16 14 C 0.07 2.48 3.38 31.32 0.11 2.59 16 15 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 16 C 0.16 6.79 6.00 86.38 0.52 7.31 16 17 N -0.76 -40.91 5.59 -343.45 -1.92 -42.83 16 18 C -0.34 -20.03 9.99 84.03 0.84 -19.19 16 19 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 20 C -0.11 -6.38 5.50 84.86 0.47 -5.91 16 21 N -0.97 -63.44 13.70 21.65 0.30 -63.14 16 22 Si 1.13 53.00 29.92 68.60 2.05 55.06 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 26 C -0.13 -2.78 5.67 31.76 0.18 -2.60 16 27 C -0.12 -1.37 4.62 30.48 0.14 -1.22 16 28 C 0.10 0.95 6.03 86.38 0.52 1.47 16 29 H 0.10 0.87 8.06 -2.91 -0.02 0.85 16 30 H 0.10 0.85 7.84 -2.91 -0.02 0.83 16 31 H 0.11 1.15 8.06 -2.91 -0.02 1.12 16 32 H 0.08 0.50 7.79 -2.39 -0.02 0.49 16 33 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 35 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 36 H 0.12 0.57 7.93 -2.39 -0.02 0.55 16 37 H 0.12 0.53 7.70 -2.39 -0.02 0.51 16 38 H 0.08 1.69 7.00 -2.39 -0.02 1.67 16 39 H 0.07 1.26 6.90 -2.38 -0.02 1.25 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.05 1.28 6.61 -2.39 -0.02 1.27 16 43 H 0.10 1.92 6.46 -2.39 -0.02 1.91 16 44 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.36 20.58 6.50 -92.71 -0.60 19.98 16 47 H 0.24 15.89 6.77 -92.71 -0.63 15.26 16 48 H 0.09 1.86 7.75 -2.39 -0.02 1.84 16 49 H 0.09 1.83 7.83 -2.39 -0.02 1.81 16 50 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.12 0.40 5.92 -2.39 -0.01 0.39 16 53 H 0.08 0.73 6.81 -2.39 -0.02 0.71 16 Total: -1.00 -80.16 409.59 2.87 -77.28 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.42 Total: 29.70 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 6.17 Total: -12.37 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -4.05 Total: -117.66 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.72 Total: -32.01 kcal Atomic # 14 Polarization: 53.00 SS G_CDS: 2.05 Total: 55.06 kcal Total: -80.16 2.87 -77.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725347752.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.039 kcal (2) G-P(sol) polarization free energy of solvation -80.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds