Wall clock time and date at job start Tue Mar 31 2020 20:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50699 * 120.00134 * 2 1 4 4 C 1.53005 * 109.47036 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47740 * 240.00563 * 3 2 1 6 6 C 1.50697 * 109.47263 * 120.00074 * 3 2 1 7 7 O 1.21286 * 119.99828 * 1.91536 * 6 3 2 8 8 N 1.34778 * 120.00721 * 181.91194 * 6 3 2 9 9 C 1.46920 * 120.60040 * 175.02842 * 8 6 3 10 10 C 1.53280 * 108.85543 * 234.26869 * 9 8 6 11 11 C 1.52405 * 109.44630 * 306.25217 * 10 9 8 12 12 C 1.53979 * 110.25508 * 182.25287 * 11 10 9 13 13 O 1.44551 * 104.69721 * 142.14944 * 12 11 10 14 14 C 1.44470 * 105.36315 * 319.97971 * 13 12 11 15 15 H 1.08999 * 110.37088 * 281.33839 * 14 13 12 16 16 C 1.53004 * 110.36383 * 159.12173 * 14 13 12 17 17 N 1.46507 * 109.47077 * 66.46115 * 16 14 13 18 18 C 1.36939 * 119.99740 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00144 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99517 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99670 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00270 * 359.97438 * 20 18 17 23 23 H 1.48509 * 109.46915 * 89.99988 * 22 20 18 24 24 H 1.48498 * 109.47332 * 209.99922 * 22 20 18 25 25 H 1.48500 * 109.47019 * 330.00303 * 22 20 18 26 26 C 1.53995 * 110.28147 * 297.23225 * 11 10 9 27 27 C 1.52410 * 111.02628 * 59.76599 * 11 10 9 28 28 C 1.47228 * 120.78393 * 355.17026 * 8 6 3 29 29 H 1.08000 * 120.00237 * 359.97438 * 1 2 3 30 30 H 1.08004 * 119.99957 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00237 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47182 * 167.20528 * 4 3 2 33 33 H 1.08997 * 109.46825 * 287.20991 * 4 3 2 34 34 H 1.09000 * 109.47175 * 47.20609 * 4 3 2 35 35 H 1.08996 * 109.46621 * 308.04419 * 5 3 2 36 36 H 1.09005 * 109.47059 * 68.04249 * 5 3 2 37 37 H 1.09001 * 109.47080 * 188.04162 * 5 3 2 38 38 H 1.09005 * 109.59392 * 114.41856 * 9 8 6 39 39 H 1.08996 * 109.59571 * 354.12086 * 9 8 6 40 40 H 1.08999 * 109.47776 * 66.24110 * 10 9 8 41 41 H 1.08997 * 109.47661 * 186.25541 * 10 9 8 42 42 H 1.09000 * 110.39582 * 260.95383 * 12 11 10 43 43 H 1.08999 * 110.39458 * 23.34728 * 12 11 10 44 44 H 1.09004 * 109.46797 * 186.45072 * 16 14 13 45 45 H 1.08999 * 109.47463 * 306.45624 * 16 14 13 46 46 H 0.96992 * 120.00021 * 359.97438 * 17 16 14 47 47 H 0.96996 * 119.99980 * 179.97438 * 21 20 18 48 48 H 1.08998 * 110.54084 * 0.23313 * 26 11 10 49 49 H 1.08995 * 110.54584 * 123.02378 * 26 11 10 50 50 H 1.08998 * 109.47354 * 60.21788 * 27 11 10 51 51 H 1.08997 * 109.47678 * 180.23847 * 27 11 10 52 52 H 1.08996 * 109.54058 * 5.96363 * 28 8 6 53 53 H 1.08999 * 109.69600 * 245.62879 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9430 1.3863 -1.2493 6 6 2.9298 1.3849 1.2304 7 8 2.9615 0.4572 2.0110 8 7 3.6697 2.4871 1.4635 9 6 4.4339 2.6249 2.7107 10 6 4.0438 3.9436 3.3876 11 6 4.2172 5.0916 2.4002 12 6 3.8839 6.4331 3.0785 13 8 4.8462 7.3665 2.5380 14 6 6.0913 6.6368 2.4711 15 1 6.5544 6.5855 3.4565 16 6 7.0422 7.2968 1.4705 17 7 7.4390 8.6154 1.9707 18 6 8.2930 9.3967 1.2389 19 1 8.6744 9.0406 0.2933 20 6 8.6685 10.6463 1.7126 21 7 9.4898 11.3970 1.0095 22 14 8.0084 11.2624 3.3479 23 1 8.9255 10.8478 4.4398 24 1 7.9136 12.7440 3.3169 25 1 6.6612 10.6851 3.5870 26 6 5.6953 5.2225 1.9882 27 6 3.3416 4.8909 1.1690 28 6 3.7271 3.5786 0.4770 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.5949 3.3954 0.2282 33 1 0.6016 2.5468 -0.9808 34 1 0.3027 2.2904 0.7550 35 1 3.5517 0.4853 -1.3241 36 1 2.3113 1.4726 -2.1334 37 1 3.5925 2.2590 -1.1802 38 1 5.5008 2.6305 2.4869 39 1 4.2041 1.7914 3.3743 40 1 3.0030 3.8939 3.7077 41 1 4.6830 4.1102 4.2545 42 1 2.8701 6.7445 2.8267 43 1 3.9996 6.3514 4.1592 44 1 7.9280 6.6739 1.3459 45 1 6.5387 7.4088 0.5103 46 1 7.0968 8.9350 2.8201 47 1 9.7519 12.2703 1.3403 48 1 6.2998 4.4648 2.4867 49 1 5.7990 5.1447 0.9060 50 1 2.2949 4.8489 1.4705 51 1 3.4882 5.7222 0.4794 52 1 3.0283 3.3741 -0.3340 53 1 4.7378 3.6595 0.0771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725349856.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:43 Heat of formation + Delta-G solvation = -28.182945 kcal Electronic energy + Delta-G solvation = -30808.647958 eV Core-core repulsion = 26874.919647 eV Total energy + Delta-G solvation = -3933.728311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.45572 -39.96204 -37.19300 -36.77945 -34.74952 -33.56536 -32.03038 -31.73268 -30.67145 -29.87608 -27.91177 -27.73459 -25.66251 -24.66354 -23.87212 -22.89831 -22.29061 -21.01462 -20.88143 -19.15427 -18.29829 -17.61270 -17.03386 -16.89533 -16.18433 -15.78715 -15.48913 -15.31151 -15.18916 -14.82041 -14.42558 -14.40156 -14.31334 -13.90028 -13.70242 -13.30495 -13.09687 -12.87442 -12.69574 -12.66937 -12.57869 -12.42274 -12.26037 -12.15728 -11.81007 -11.69703 -11.58403 -11.56733 -11.27725 -11.10688 -11.03301 -10.84364 -10.61779 -10.54352 -10.32561 -10.10847 -10.02714 -9.65239 -9.55836 -9.49134 -8.92504 -8.87782 -7.19478 -5.73761 -3.08595 1.87635 2.33608 2.71835 3.41826 3.48307 3.49194 3.96986 4.03707 4.20825 4.24988 4.30076 4.46920 4.52741 4.63059 4.63990 4.70045 4.78584 4.88988 4.95452 4.98398 5.05764 5.12705 5.18506 5.23742 5.24683 5.26846 5.27179 5.36718 5.41012 5.49217 5.51994 5.55771 5.62831 5.63877 5.64895 5.67199 5.72289 5.79029 5.81109 5.85214 5.87906 6.02542 6.12520 6.21757 6.26160 6.38511 6.46405 6.63361 7.08228 7.10506 7.87326 8.01675 8.45206 9.24969 9.97602 10.17983 11.44576 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026346 B = 0.002366 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.544815 B =11831.470344 C =12093.870747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 C -0.055 4.055 4 C -0.164 4.164 5 C -0.155 4.155 6 C 0.529 3.471 7 O -0.540 6.540 8 N -0.606 5.606 9 C 0.111 3.889 10 C -0.119 4.119 11 C -0.090 4.090 12 C 0.052 3.948 13 O -0.357 6.357 14 C 0.066 3.934 15 H 0.066 0.934 16 C 0.165 3.835 17 N -0.752 5.752 18 C -0.243 4.243 19 H 0.089 0.911 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.883 3.117 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.273 1.273 26 C -0.139 4.139 27 C -0.121 4.121 28 C 0.082 3.918 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.039 0.961 45 H 0.033 0.967 46 H 0.364 0.636 47 H 0.259 0.741 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.069 0.931 51 H 0.087 0.913 52 H 0.110 0.890 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.857 -22.986 -1.178 29.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.141 4.141 3 C -0.058 4.058 4 C -0.221 4.221 5 C -0.212 4.212 6 C 0.317 3.683 7 O -0.416 6.416 8 N -0.340 5.340 9 C -0.012 4.012 10 C -0.157 4.157 11 C -0.090 4.090 12 C -0.026 4.026 13 O -0.275 6.275 14 C 0.008 3.992 15 H 0.084 0.916 16 C 0.038 3.962 17 N -0.398 5.398 18 C -0.373 4.373 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.199 1.199 26 C -0.177 4.177 27 C -0.159 4.159 28 C -0.040 4.040 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.197 0.803 47 H 0.069 0.931 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.088 0.912 51 H 0.105 0.895 52 H 0.127 0.873 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.711 -23.182 -1.010 29.808 hybrid contribution -0.340 0.404 1.277 1.382 sum -19.051 -22.777 0.267 29.695 Atomic orbital electron populations 1.23995 0.95893 1.02295 1.01008 1.22493 0.95609 0.96531 0.99446 1.19844 0.95654 0.96013 0.94264 1.22386 0.99066 0.97266 1.03378 1.22221 0.99730 1.03567 0.95655 1.20445 0.79267 0.81608 0.86939 1.90682 1.65605 1.36889 1.48463 1.48088 1.47662 1.18423 1.19783 1.21651 0.95576 0.98231 0.85700 1.21854 1.02503 0.93537 0.97817 1.21483 0.95940 0.95810 0.95797 1.23407 0.94321 0.87623 0.97200 1.89318 1.18957 1.34789 1.84467 1.23370 0.86372 0.89930 0.99518 0.91594 1.20703 0.93715 0.87272 0.94510 1.42634 1.56770 1.16217 1.24184 1.19050 1.18267 0.97025 1.02930 0.89274 1.24663 0.99440 0.96785 0.98318 1.69705 1.38137 1.11728 1.38763 0.86546 0.79083 0.78094 0.84974 1.21166 1.21760 1.19903 1.23074 0.94408 0.97598 1.02622 1.21923 0.99412 0.97381 0.97194 1.22542 1.03308 0.86256 0.91864 0.87796 0.88239 0.86892 0.90264 0.90905 0.91406 0.91703 0.90974 0.90399 0.91073 0.89048 0.91316 0.90239 0.89468 0.92527 0.94381 0.94886 0.80303 0.93110 0.90385 0.90045 0.91236 0.89469 0.87271 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 13.70 29.02 0.40 -0.98 16 2 C -0.12 -1.02 7.99 -36.02 -0.29 -1.30 16 3 C -0.05 -0.42 0.72 -156.81 -0.11 -0.53 16 4 C -0.16 -0.99 6.85 37.16 0.25 -0.74 16 5 C -0.15 -0.94 8.08 37.16 0.30 -0.64 16 6 C 0.53 5.50 6.48 -10.99 -0.07 5.43 16 7 O -0.54 -7.62 15.46 5.55 0.09 -7.53 16 8 N -0.61 -5.31 2.97 -172.42 -0.51 -5.82 16 9 C 0.11 0.98 6.10 -3.67 -0.02 0.96 16 10 C -0.12 -0.98 4.63 -26.89 -0.12 -1.10 16 11 C -0.09 -0.83 0.68 -154.09 -0.11 -0.94 16 12 C 0.05 0.59 6.72 37.67 0.25 0.85 16 13 O -0.36 -5.84 11.33 -35.23 -0.40 -6.24 16 14 C 0.07 1.00 3.33 -25.89 -0.09 0.91 16 15 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 16 C 0.17 3.18 5.88 -4.04 -0.02 3.15 16 17 N -0.75 -18.46 5.39 -59.90 -0.32 -18.78 16 18 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 19 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 21 N -0.94 -29.77 13.97 55.49 0.78 -29.00 16 22 Si 0.88 22.69 27.73 -169.99 -4.71 17.97 16 23 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 25 H -0.27 -6.76 6.52 56.52 0.37 -6.39 16 26 C -0.14 -1.49 4.97 -25.37 -0.13 -1.62 16 27 C -0.12 -0.95 4.30 -26.88 -0.12 -1.07 16 28 C 0.08 0.58 3.67 -3.49 -0.01 0.57 16 29 H 0.10 0.63 5.65 -52.49 -0.30 0.33 16 30 H 0.10 0.61 8.06 -52.48 -0.42 0.18 16 31 H 0.11 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.08 0.45 3.81 -51.93 -0.20 0.25 16 33 H 0.07 0.34 7.97 -51.93 -0.41 -0.07 16 34 H 0.07 0.44 6.64 -51.93 -0.34 0.10 16 35 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 36 H 0.07 0.35 8.03 -51.93 -0.42 -0.07 16 37 H 0.08 0.42 4.73 -51.93 -0.25 0.18 16 38 H 0.07 0.60 6.86 -51.93 -0.36 0.24 16 39 H 0.09 0.93 7.03 -51.93 -0.36 0.56 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 42 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 43 H 0.06 0.61 7.83 -51.93 -0.41 0.20 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.36 8.92 5.53 -40.82 -0.23 8.69 16 47 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 48 H 0.08 0.74 6.59 -51.93 -0.34 0.40 16 49 H 0.08 0.85 6.34 -51.93 -0.33 0.52 16 50 H 0.07 0.50 7.33 -51.93 -0.38 0.12 16 51 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 52 H 0.11 0.61 2.85 -51.93 -0.15 0.46 16 53 H 0.08 0.54 6.87 -51.93 -0.36 0.18 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -35.18 389.03 -7.99 -43.16 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.63 Total: 4.59 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.14 Total: -4.22 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.06 Total: -53.61 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.31 Total: -13.77 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.71 Total: 17.97 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.18 -7.99 -43.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725349856.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.981 kcal (2) G-P(sol) polarization free energy of solvation -35.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds