Wall clock time and date at job start Tue Mar 31 2020 20:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50699 * 120.00134 * 2 1 4 4 C 1.53005 * 109.47036 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47740 * 240.00563 * 3 2 1 6 6 C 1.50697 * 109.47263 * 120.00074 * 3 2 1 7 7 O 1.21286 * 119.99828 * 1.91536 * 6 3 2 8 8 N 1.34778 * 120.00721 * 181.91194 * 6 3 2 9 9 C 1.46920 * 120.60040 * 175.02842 * 8 6 3 10 10 C 1.53280 * 108.85543 * 234.26869 * 9 8 6 11 11 C 1.52405 * 109.44630 * 306.25217 * 10 9 8 12 12 C 1.53979 * 110.25508 * 182.25287 * 11 10 9 13 13 O 1.44551 * 104.69721 * 142.14944 * 12 11 10 14 14 C 1.44470 * 105.36315 * 319.97971 * 13 12 11 15 15 H 1.08999 * 110.37088 * 281.33839 * 14 13 12 16 16 C 1.53004 * 110.36383 * 159.12173 * 14 13 12 17 17 N 1.46507 * 109.47077 * 66.46115 * 16 14 13 18 18 C 1.36939 * 119.99740 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00144 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99517 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99670 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00270 * 359.97438 * 20 18 17 23 23 H 1.48509 * 109.46915 * 89.99988 * 22 20 18 24 24 H 1.48498 * 109.47332 * 209.99922 * 22 20 18 25 25 H 1.48500 * 109.47019 * 330.00303 * 22 20 18 26 26 C 1.53995 * 110.28147 * 297.23225 * 11 10 9 27 27 C 1.52410 * 111.02628 * 59.76599 * 11 10 9 28 28 C 1.47228 * 120.78393 * 355.17026 * 8 6 3 29 29 H 1.08000 * 120.00237 * 359.97438 * 1 2 3 30 30 H 1.08004 * 119.99957 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00237 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47182 * 167.20528 * 4 3 2 33 33 H 1.08997 * 109.46825 * 287.20991 * 4 3 2 34 34 H 1.09000 * 109.47175 * 47.20609 * 4 3 2 35 35 H 1.08996 * 109.46621 * 308.04419 * 5 3 2 36 36 H 1.09005 * 109.47059 * 68.04249 * 5 3 2 37 37 H 1.09001 * 109.47080 * 188.04162 * 5 3 2 38 38 H 1.09005 * 109.59392 * 114.41856 * 9 8 6 39 39 H 1.08996 * 109.59571 * 354.12086 * 9 8 6 40 40 H 1.08999 * 109.47776 * 66.24110 * 10 9 8 41 41 H 1.08997 * 109.47661 * 186.25541 * 10 9 8 42 42 H 1.09000 * 110.39582 * 260.95383 * 12 11 10 43 43 H 1.08999 * 110.39458 * 23.34728 * 12 11 10 44 44 H 1.09004 * 109.46797 * 186.45072 * 16 14 13 45 45 H 1.08999 * 109.47463 * 306.45624 * 16 14 13 46 46 H 0.96992 * 120.00021 * 359.97438 * 17 16 14 47 47 H 0.96996 * 119.99980 * 179.97438 * 21 20 18 48 48 H 1.08998 * 110.54084 * 0.23313 * 26 11 10 49 49 H 1.08995 * 110.54584 * 123.02378 * 26 11 10 50 50 H 1.08998 * 109.47354 * 60.21788 * 27 11 10 51 51 H 1.08997 * 109.47678 * 180.23847 * 27 11 10 52 52 H 1.08996 * 109.54058 * 5.96363 * 28 8 6 53 53 H 1.08999 * 109.69600 * 245.62879 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9430 1.3863 -1.2493 6 6 2.9298 1.3849 1.2304 7 8 2.9615 0.4572 2.0110 8 7 3.6697 2.4871 1.4635 9 6 4.4339 2.6249 2.7107 10 6 4.0438 3.9436 3.3876 11 6 4.2172 5.0916 2.4002 12 6 3.8839 6.4331 3.0785 13 8 4.8462 7.3665 2.5380 14 6 6.0913 6.6368 2.4711 15 1 6.5544 6.5855 3.4565 16 6 7.0422 7.2968 1.4705 17 7 7.4390 8.6154 1.9707 18 6 8.2930 9.3967 1.2389 19 1 8.6744 9.0406 0.2933 20 6 8.6685 10.6463 1.7126 21 7 9.4898 11.3970 1.0095 22 14 8.0084 11.2624 3.3479 23 1 8.9255 10.8478 4.4398 24 1 7.9136 12.7440 3.3169 25 1 6.6612 10.6851 3.5870 26 6 5.6953 5.2225 1.9882 27 6 3.3416 4.8909 1.1690 28 6 3.7271 3.5786 0.4770 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.5949 3.3954 0.2282 33 1 0.6016 2.5468 -0.9808 34 1 0.3027 2.2904 0.7550 35 1 3.5517 0.4853 -1.3241 36 1 2.3113 1.4726 -2.1334 37 1 3.5925 2.2590 -1.1802 38 1 5.5008 2.6305 2.4869 39 1 4.2041 1.7914 3.3743 40 1 3.0030 3.8939 3.7077 41 1 4.6830 4.1102 4.2545 42 1 2.8701 6.7445 2.8267 43 1 3.9996 6.3514 4.1592 44 1 7.9280 6.6739 1.3459 45 1 6.5387 7.4088 0.5103 46 1 7.0968 8.9350 2.8201 47 1 9.7519 12.2703 1.3403 48 1 6.2998 4.4648 2.4867 49 1 5.7990 5.1447 0.9060 50 1 2.2949 4.8489 1.4705 51 1 3.4882 5.7222 0.4794 52 1 3.0283 3.3741 -0.3340 53 1 4.7378 3.6595 0.0771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725349856.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:42 Heat of formation + Delta-G solvation = -51.716691 kcal Electronic energy + Delta-G solvation = -30809.668458 eV Core-core repulsion = 26874.919647 eV Total energy + Delta-G solvation = -3934.748811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.19410 -40.85120 -38.08585 -37.48263 -36.55231 -34.42598 -33.69667 -32.67378 -31.42387 -31.19940 -28.60964 -28.34332 -27.16229 -25.33934 -24.52159 -24.12848 -23.56621 -22.30535 -21.68101 -19.84678 -19.68731 -19.01360 -17.80301 -17.52256 -17.26117 -16.67639 -16.48493 -16.29222 -16.28626 -15.96121 -15.53486 -15.35716 -15.05090 -14.92406 -14.77481 -14.56949 -14.19797 -13.92682 -13.77407 -13.56696 -13.41343 -13.27769 -13.17394 -13.13987 -12.93789 -12.83330 -12.55605 -12.29368 -12.19792 -12.12683 -12.06358 -11.89212 -11.83494 -11.66429 -11.53139 -11.31363 -11.30207 -11.01203 -10.74122 -10.54920 -10.27163 -9.65255 -9.29873 -8.03117 -5.35716 1.29273 1.37771 1.40615 1.49056 1.58569 2.05606 2.48478 2.96317 3.29084 3.41273 3.43915 3.53861 3.65873 3.70630 3.81053 3.92666 4.03289 4.05367 4.11627 4.14765 4.20613 4.30800 4.42482 4.45414 4.48483 4.58724 4.59939 4.64466 4.66541 4.75012 4.77215 4.80266 4.82580 4.84225 4.91366 4.94899 5.00506 5.02790 5.03813 5.05753 5.18508 5.23812 5.25146 5.28153 5.38398 5.55433 5.69623 5.74213 5.81727 6.01203 6.21163 6.38249 7.07554 7.12795 7.84547 8.03096 9.18238 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026346 B = 0.002366 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.544815 B =11831.470344 C =12093.870747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.144 4.144 3 C -0.052 4.052 4 C -0.162 4.162 5 C -0.153 4.153 6 C 0.523 3.477 7 O -0.585 6.585 8 N -0.602 5.602 9 C 0.109 3.891 10 C -0.110 4.110 11 C -0.080 4.080 12 C 0.047 3.953 13 O -0.391 6.391 14 C 0.071 3.929 15 H 0.066 0.934 16 C 0.159 3.841 17 N -0.758 5.758 18 C -0.233 4.233 19 H 0.059 0.941 20 C -0.065 4.065 21 N -0.983 5.983 22 Si 0.954 3.046 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.258 1.258 26 C -0.130 4.130 27 C -0.118 4.118 28 C 0.082 3.918 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.027 0.973 46 H 0.366 0.634 47 H 0.258 0.742 48 H 0.093 0.907 49 H 0.086 0.914 50 H 0.080 0.920 51 H 0.084 0.916 52 H 0.127 0.873 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.868 -23.638 -0.658 31.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.163 4.163 3 C -0.055 4.055 4 C -0.219 4.219 5 C -0.210 4.210 6 C 0.313 3.687 7 O -0.466 6.466 8 N -0.334 5.334 9 C -0.013 4.013 10 C -0.148 4.148 11 C -0.080 4.080 12 C -0.030 4.030 13 O -0.311 6.311 14 C 0.013 3.987 15 H 0.084 0.916 16 C 0.033 3.967 17 N -0.403 5.403 18 C -0.364 4.364 19 H 0.077 0.923 20 C -0.256 4.256 21 N -0.633 5.633 22 Si 0.782 3.218 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.183 1.183 26 C -0.168 4.168 27 C -0.156 4.156 28 C -0.039 4.039 29 H 0.135 0.865 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.198 0.802 47 H 0.067 0.933 48 H 0.112 0.888 49 H 0.105 0.895 50 H 0.099 0.901 51 H 0.102 0.898 52 H 0.145 0.855 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.746 -23.863 -0.497 31.624 hybrid contribution 0.277 0.533 1.048 1.208 sum -20.469 -23.330 0.552 31.041 Atomic orbital electron populations 1.24187 0.95523 1.03299 0.99288 1.22530 0.96191 0.96489 1.01087 1.19868 0.95737 0.96396 0.93467 1.22402 0.98578 0.96501 1.04383 1.22242 0.99796 1.03446 0.95528 1.21000 0.79249 0.81210 0.87276 1.90657 1.67185 1.38538 1.50181 1.48158 1.46900 1.18390 1.19939 1.21649 0.95968 0.97996 0.85728 1.21777 1.02854 0.92506 0.97631 1.21400 0.95084 0.95092 0.96440 1.23629 0.93884 0.87742 0.97703 1.89272 1.19892 1.36839 1.85085 1.23241 0.85601 0.91546 0.98298 0.91583 1.20916 0.95003 0.85256 0.95491 1.42694 1.56062 1.17667 1.23889 1.19066 1.17984 0.97395 1.01989 0.92252 1.25495 1.00377 0.97271 1.02477 1.69878 1.40191 1.12252 1.41006 0.85407 0.79119 0.77046 0.80255 1.20181 1.22086 1.18261 1.23041 0.95604 0.95107 1.03080 1.21909 0.99755 0.97489 0.96467 1.22681 1.04204 0.85229 0.91793 0.86463 0.87581 0.88375 0.89734 0.89013 0.91868 0.92652 0.89291 0.89621 0.90443 0.90569 0.91056 0.89538 0.88250 0.91794 0.93638 0.95466 0.80160 0.93323 0.88813 0.89515 0.90134 0.89765 0.85519 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 13.70 67.79 0.93 -1.42 16 2 C -0.14 -2.29 7.99 25.65 0.21 -2.08 16 3 C -0.05 -0.71 0.72 -53.67 -0.04 -0.75 16 4 C -0.16 -1.51 6.85 71.98 0.49 -1.02 16 5 C -0.15 -1.55 8.08 71.98 0.58 -0.97 16 6 C 0.52 10.35 6.48 87.66 0.57 10.92 16 7 O -0.59 -16.65 15.46 -3.05 -0.05 -16.69 16 8 N -0.60 -9.43 2.97 -817.79 -2.43 -11.85 16 9 C 0.11 1.74 6.10 86.39 0.53 2.27 16 10 C -0.11 -1.53 4.63 30.49 0.14 -1.38 16 11 C -0.08 -1.25 0.68 -51.91 -0.04 -1.29 16 12 C 0.05 0.95 6.72 72.31 0.49 1.43 16 13 O -0.39 -12.03 11.33 -148.98 -1.69 -13.72 16 14 C 0.07 2.01 3.33 31.14 0.10 2.12 16 15 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 16 C 0.16 5.97 5.88 86.38 0.51 6.48 16 17 N -0.76 -36.67 5.39 -343.42 -1.85 -38.52 16 18 C -0.23 -13.63 10.47 84.03 0.88 -12.75 16 19 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 20 C -0.06 -3.90 5.50 84.86 0.47 -3.44 16 21 N -0.98 -63.81 13.97 21.65 0.30 -63.51 16 22 Si 0.95 46.92 27.73 68.60 1.90 48.83 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 24 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 25 H -0.26 -11.87 6.52 99.48 0.65 -11.22 16 26 C -0.13 -2.46 4.97 31.48 0.16 -2.31 16 27 C -0.12 -1.50 4.30 30.50 0.13 -1.37 16 28 C 0.08 0.92 3.67 86.34 0.32 1.24 16 29 H 0.12 1.14 5.65 -2.91 -0.02 1.12 16 30 H 0.11 1.15 8.06 -2.91 -0.02 1.13 16 31 H 0.10 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.08 0.69 3.81 -2.39 -0.01 0.68 16 33 H 0.09 0.53 7.97 -2.39 -0.02 0.51 16 34 H 0.06 0.67 6.64 -2.39 -0.02 0.65 16 35 H 0.05 0.67 8.13 -2.39 -0.02 0.65 16 36 H 0.09 0.61 8.03 -2.38 -0.02 0.60 16 37 H 0.09 0.71 4.73 -2.39 -0.01 0.70 16 38 H 0.08 1.14 6.86 -2.38 -0.02 1.12 16 39 H 0.08 1.50 7.03 -2.39 -0.02 1.48 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 1.12 8.13 -2.39 -0.02 1.10 16 42 H 0.10 1.75 7.85 -2.39 -0.02 1.73 16 43 H 0.06 1.20 7.83 -2.39 -0.02 1.18 16 44 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.37 17.35 5.53 -92.71 -0.51 16.84 16 47 H 0.26 15.93 8.31 -92.71 -0.77 15.15 16 48 H 0.09 1.50 6.59 -2.39 -0.02 1.49 16 49 H 0.09 1.57 6.34 -2.39 -0.02 1.56 16 50 H 0.08 0.88 7.33 -2.39 -0.02 0.86 16 51 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.13 1.01 2.85 -2.39 -0.01 1.00 16 53 H 0.08 0.89 6.87 -2.39 -0.02 0.88 16 Total: -1.00 -77.54 389.03 2.95 -74.58 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.34 Total: 25.19 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 6.42 Total: -4.31 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -3.97 Total: -113.88 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.73 Total: -30.42 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.90 Total: 48.83 kcal Total: -77.54 2.95 -74.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725349856.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.867 kcal (2) G-P(sol) polarization free energy of solvation -77.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds