Wall clock time and date at job start Tue Mar 31 2020 21:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99894 * 2 1 4 4 C 1.52994 * 109.47652 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.46955 * 239.99635 * 3 2 1 6 6 C 1.50707 * 109.47067 * 119.99952 * 3 2 1 7 7 O 1.21275 * 119.99871 * 359.97438 * 6 3 2 8 8 N 1.34776 * 120.00043 * 179.97438 * 6 3 2 9 9 C 1.46500 * 120.00055 * 179.97438 * 8 6 3 10 10 C 1.52999 * 109.46962 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.33043 * 305.70092 * 10 9 8 12 12 C 1.54604 * 110.36819 * 183.46014 * 10 9 8 13 13 C 1.53999 * 103.88419 * 217.27702 * 12 10 9 14 14 C 1.53965 * 104.57952 * 0.14309 * 13 12 10 15 15 O 1.44474 * 110.36740 * 67.93920 * 10 9 8 16 16 C 1.52406 * 110.25144 * 241.59335 * 13 12 10 17 17 C 1.53297 * 109.40126 * 297.41881 * 16 13 12 18 18 N 1.46921 * 108.72210 * 306.31703 * 17 16 13 19 19 C 1.36938 * 120.57658 * 234.18356 * 18 17 16 20 20 H 1.08002 * 119.99983 * 152.46047 * 19 18 17 21 21 C 1.38809 * 120.00066 * 332.46228 * 19 18 17 22 22 N 1.31616 * 120.00286 * 159.36439 * 21 19 18 23 23 Si 1.86803 * 119.99828 * 339.36102 * 21 19 18 24 24 H 1.48504 * 109.47126 * 93.18515 * 23 21 19 25 25 H 1.48497 * 109.46987 * 213.18467 * 23 21 19 26 26 H 1.48500 * 109.47036 * 333.18431 * 23 21 19 27 27 C 1.46931 * 118.84772 * 54.15919 * 18 17 16 28 28 C 1.52410 * 110.24228 * 118.67747 * 13 12 10 29 29 H 1.08009 * 119.99429 * 0.02562 * 1 2 3 30 30 H 1.07992 * 120.00330 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.99734 * 179.97438 * 2 1 3 32 32 H 1.09007 * 109.46694 * 300.00117 * 4 3 2 33 33 H 1.08992 * 109.47169 * 59.99519 * 4 3 2 34 34 H 1.08996 * 109.47217 * 180.02562 * 4 3 2 35 35 H 1.08995 * 109.47200 * 180.02562 * 5 3 2 36 36 H 1.09003 * 109.47335 * 300.00624 * 5 3 2 37 37 H 1.09002 * 109.47291 * 59.99702 * 5 3 2 38 38 H 0.97000 * 119.99652 * 0.02562 * 8 6 3 39 39 H 1.08999 * 109.47335 * 299.99973 * 9 8 6 40 40 H 1.09000 * 109.47038 * 60.00579 * 9 8 6 41 41 H 1.08997 * 110.54383 * 335.87632 * 12 10 9 42 42 H 1.08995 * 110.54426 * 98.67665 * 12 10 9 43 43 H 1.09001 * 110.38856 * 142.41487 * 14 13 12 44 44 H 1.08996 * 110.39546 * 264.81011 * 14 13 12 45 45 H 1.09004 * 109.48277 * 57.39786 * 16 13 12 46 46 H 1.08997 * 109.48642 * 177.43883 * 16 13 12 47 47 H 1.09003 * 109.59354 * 186.54513 * 17 16 13 48 48 H 1.09006 * 109.59441 * 66.09061 * 17 16 13 49 49 H 0.97007 * 120.00436 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.59676 * 186.06934 * 27 18 17 51 51 H 1.09002 * 109.72153 * 65.68060 * 27 18 17 52 52 H 1.08999 * 109.48247 * 182.55114 * 28 13 12 53 53 H 1.08993 * 109.48723 * 302.58779 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0694 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9299 1.3849 1.2305 7 8 2.9347 0.4722 2.0290 8 7 3.6995 2.4707 1.4436 9 6 4.5413 2.5485 2.6400 10 6 5.3063 3.8735 2.6399 11 1 5.8603 3.9909 1.7086 12 6 6.2670 3.9403 3.8494 13 6 6.2023 5.4139 4.2918 14 6 5.2140 6.0702 3.3105 15 8 4.3960 4.9798 2.8264 16 6 7.5764 6.0619 4.1705 17 6 8.5581 5.3540 5.1113 18 7 7.9918 5.3490 6.4670 19 6 8.7079 5.8462 7.5230 20 1 8.1931 6.2528 8.3809 21 6 10.0955 5.8278 7.4907 22 7 10.7827 6.6377 8.2679 23 14 10.9875 4.6534 6.3441 24 1 11.2818 5.3417 5.0615 25 1 12.2591 4.2164 6.9745 26 1 10.1308 3.4685 6.0848 27 6 6.6434 4.8016 6.6699 28 6 5.6751 5.5136 5.7184 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 0.4431 2.4101 -0.8909 33 1 0.4424 2.4105 0.8890 34 1 1.6144 3.4119 -0.0011 35 1 3.4885 2.3298 -1.2490 36 1 3.6515 0.5575 -1.2492 37 1 2.3166 1.3282 -2.1392 38 1 3.6954 3.2009 0.8050 39 1 3.9143 2.4915 3.5298 40 1 5.2493 1.7198 2.6407 41 1 5.9213 3.2853 4.6491 42 1 7.2804 3.6755 3.5480 43 1 4.5987 6.8069 3.8270 44 1 5.7516 6.5352 2.4842 45 1 7.9302 5.9745 3.1432 46 1 7.5071 7.1150 4.4430 47 1 9.5095 5.8860 5.1146 48 1 8.7114 4.3284 4.7753 49 1 11.7524 6.6246 8.2456 50 1 6.3321 4.9693 7.7010 51 1 6.6446 3.7325 6.4577 52 1 5.5916 6.5625 6.0026 53 1 4.6944 5.0417 5.7773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733364032.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:45 Heat of formation + Delta-G solvation = -45.589433 kcal Electronic energy + Delta-G solvation = -30386.936473 eV Core-core repulsion = 26452.453360 eV Total energy + Delta-G solvation = -3934.483113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.66668 -40.12080 -37.19798 -36.60008 -34.99802 -33.42033 -31.66027 -31.27697 -30.52633 -30.34818 -27.83712 -27.07230 -26.04939 -24.10785 -23.72418 -22.91613 -21.60003 -21.20608 -21.02293 -18.87225 -18.49469 -17.35913 -16.86110 -16.66115 -16.12855 -15.57924 -15.44930 -15.31505 -15.06473 -14.84607 -14.46244 -14.23832 -14.03219 -13.75470 -13.60596 -13.17227 -12.94160 -12.81904 -12.76773 -12.53919 -12.44928 -12.27675 -12.26126 -12.17410 -11.82403 -11.59278 -11.48815 -11.19325 -11.11771 -11.06710 -10.82628 -10.68114 -10.47304 -10.12247 -10.05049 -9.95507 -9.75492 -9.61365 -9.56724 -9.42584 -9.26556 -8.62849 -6.97947 -5.96638 -3.32100 1.92347 2.44970 3.01052 3.28327 3.46139 3.48449 3.77457 4.18282 4.35734 4.48803 4.50667 4.54523 4.69431 4.74055 4.87271 4.92229 5.00978 5.02609 5.04078 5.11174 5.25656 5.28345 5.30186 5.34327 5.40526 5.42511 5.55520 5.57913 5.60131 5.67964 5.73921 5.78369 5.78812 5.82234 5.90422 6.01486 6.03910 6.14954 6.19854 6.29434 6.30280 6.41053 6.42528 6.45209 6.58678 6.64532 6.65915 6.79916 6.94512 7.27781 7.95312 8.01765 8.31536 8.93153 9.70711 10.08796 11.19443 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.002351 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.700824 B =11908.663434 C =12168.713350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 C -0.056 4.056 4 C -0.144 4.144 5 C -0.137 4.137 6 C 0.524 3.476 7 O -0.537 6.537 8 N -0.723 5.723 9 C 0.127 3.873 10 C 0.063 3.937 11 H 0.071 0.929 12 C -0.138 4.138 13 C -0.077 4.077 14 C 0.054 3.946 15 O -0.372 6.372 16 C -0.122 4.122 17 C 0.127 3.873 18 N -0.604 5.604 19 C -0.258 4.258 20 H 0.085 0.915 21 C 0.022 3.978 22 N -0.909 5.909 23 Si 0.882 3.118 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.271 1.271 27 C 0.148 3.852 28 C -0.119 4.119 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.402 0.598 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.025 0.975 49 H 0.262 0.738 50 H 0.063 0.937 51 H 0.023 0.977 52 H 0.064 0.936 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.680 -7.025 -20.823 28.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.142 4.142 3 C -0.059 4.059 4 C -0.201 4.201 5 C -0.194 4.194 6 C 0.310 3.690 7 O -0.413 6.413 8 N -0.375 5.375 9 C 0.003 3.997 10 C 0.005 3.995 11 H 0.089 0.911 12 C -0.176 4.176 13 C -0.077 4.077 14 C -0.023 4.023 15 O -0.291 6.291 16 C -0.161 4.161 17 C 0.001 3.999 18 N -0.328 5.328 19 C -0.387 4.387 20 H 0.103 0.897 21 C -0.177 4.177 22 N -0.552 5.552 23 Si 0.713 3.287 24 H -0.217 1.217 25 H -0.232 1.232 26 H -0.196 1.196 27 C 0.022 3.978 28 C -0.158 4.158 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.237 0.763 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.043 0.957 49 H 0.072 0.928 50 H 0.081 0.919 51 H 0.041 0.959 52 H 0.083 0.917 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.731 -7.630 -20.167 27.916 hybrid contribution 0.970 -0.207 -0.816 1.285 sum -16.761 -7.837 -20.983 27.975 Atomic orbital electron populations 1.23972 0.95869 1.02273 1.00952 1.22492 0.95638 0.96577 0.99491 1.19906 0.95756 0.96085 0.94164 1.21955 0.98798 0.96321 1.03060 1.21818 0.99259 1.02601 0.95760 1.20419 0.79697 0.81860 0.87066 1.90710 1.65786 1.37921 1.46896 1.45947 1.45027 1.20905 1.25575 1.21488 0.93888 0.95885 0.88415 1.23251 0.90483 0.86895 0.98840 0.91096 1.23029 0.99740 0.97636 0.97196 1.21345 0.95986 0.94028 0.96373 1.23583 0.92856 0.89880 0.95955 1.89135 1.31566 1.21685 1.86760 1.21983 0.94329 1.00766 0.99022 1.21364 0.96081 0.97149 0.85290 1.44327 1.14613 1.70988 1.02871 1.18928 0.88661 1.33032 0.98049 0.89747 1.25289 0.96319 0.98535 0.97526 1.69837 1.06617 1.36916 1.41788 0.86952 0.78861 0.83163 0.79721 1.21731 1.23196 1.19569 1.20966 0.84966 0.94505 0.97370 1.21956 0.98407 1.01766 0.93693 0.87887 0.88217 0.86863 0.91011 0.91615 0.91671 0.91803 0.91814 0.91137 0.76320 0.90413 0.90084 0.89830 0.90000 0.89072 0.92394 0.92766 0.91347 0.90993 0.95699 0.92793 0.91893 0.95903 0.91746 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 13.70 29.01 0.40 -1.06 16 2 C -0.12 -1.08 8.00 -36.03 -0.29 -1.37 16 3 C -0.06 -0.45 0.84 -156.81 -0.13 -0.58 16 4 C -0.14 -0.94 7.02 37.15 0.26 -0.68 16 5 C -0.14 -0.82 8.35 37.16 0.31 -0.51 16 6 C 0.52 5.91 6.47 -10.98 -0.07 5.84 16 7 O -0.54 -8.30 16.03 5.56 0.09 -8.21 16 8 N -0.72 -7.08 5.34 -60.29 -0.32 -7.40 16 9 C 0.13 1.41 5.28 -4.04 -0.02 1.39 16 10 C 0.06 0.70 3.33 -25.89 -0.09 0.61 16 11 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 12 C -0.14 -1.80 4.96 -25.37 -0.13 -1.93 16 13 C -0.08 -1.09 0.69 -154.09 -0.11 -1.20 16 14 C 0.05 0.65 6.73 37.66 0.25 0.91 16 15 O -0.37 -4.58 11.35 -35.23 -0.40 -4.98 16 16 C -0.12 -1.98 4.64 -26.88 -0.12 -2.11 16 17 C 0.13 2.63 3.89 -3.66 -0.01 2.62 16 18 N -0.60 -13.91 2.76 -172.19 -0.47 -14.39 16 19 C -0.26 -7.12 10.03 -15.06 -0.15 -7.27 16 20 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 21 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 22 N -0.91 -27.69 13.97 55.49 0.78 -26.91 16 23 Si 0.88 22.13 24.35 -169.99 -4.14 17.99 16 24 H -0.29 -6.96 6.63 56.52 0.37 -6.59 16 25 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 26 H -0.27 -6.65 6.64 56.52 0.38 -6.28 16 27 C 0.15 2.82 6.20 -3.65 -0.02 2.80 16 28 C -0.12 -1.87 4.63 -26.88 -0.12 -1.99 16 29 H 0.10 0.67 5.69 -52.48 -0.30 0.37 16 30 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 31 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.07 0.36 7.50 -51.92 -0.39 -0.03 16 33 H 0.06 0.49 7.49 -51.93 -0.39 0.10 16 34 H 0.06 0.37 7.57 -51.93 -0.39 -0.02 16 35 H 0.06 0.31 7.56 -51.93 -0.39 -0.08 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.40 3.10 7.31 -40.82 -0.30 2.80 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.14 6.32 -51.93 -0.33 0.81 16 42 H 0.08 1.09 6.57 -51.93 -0.34 0.75 16 43 H 0.09 1.07 7.85 -51.93 -0.41 0.66 16 44 H 0.06 0.64 7.83 -51.93 -0.41 0.24 16 45 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.07 1.67 4.47 -51.93 -0.23 1.44 16 48 H 0.03 0.51 5.81 -51.93 -0.30 0.21 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 50 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 51 H 0.02 0.43 6.85 -51.93 -0.36 0.07 16 52 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 53 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 396.65 15.07 5.98 5.98 Total: -1.00 -32.66 396.65 -7.84 -40.50 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -9.21 Total: 1.41 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -0.14 Total: -4.00 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.02 Total: -48.70 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.31 Total: -13.19 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.66 -7.84 -40.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733364032.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.093 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds