Wall clock time and date at job start Tue Mar 31 2020 21:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99894 * 2 1 4 4 C 1.52994 * 109.47652 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.46955 * 239.99635 * 3 2 1 6 6 C 1.50707 * 109.47067 * 119.99952 * 3 2 1 7 7 O 1.21275 * 119.99871 * 359.97438 * 6 3 2 8 8 N 1.34776 * 120.00043 * 179.97438 * 6 3 2 9 9 C 1.46500 * 120.00055 * 179.97438 * 8 6 3 10 10 C 1.52999 * 109.46962 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.33043 * 305.70092 * 10 9 8 12 12 C 1.54604 * 110.36819 * 183.46014 * 10 9 8 13 13 C 1.53999 * 103.88419 * 217.27702 * 12 10 9 14 14 C 1.53965 * 104.57952 * 0.14309 * 13 12 10 15 15 O 1.44474 * 110.36740 * 67.93920 * 10 9 8 16 16 C 1.52406 * 110.25144 * 241.59335 * 13 12 10 17 17 C 1.53297 * 109.40126 * 297.41881 * 16 13 12 18 18 N 1.46921 * 108.72210 * 306.31703 * 17 16 13 19 19 C 1.36938 * 120.57658 * 234.18356 * 18 17 16 20 20 H 1.08002 * 119.99983 * 152.46047 * 19 18 17 21 21 C 1.38809 * 120.00066 * 332.46228 * 19 18 17 22 22 N 1.31616 * 120.00286 * 159.36439 * 21 19 18 23 23 Si 1.86803 * 119.99828 * 339.36102 * 21 19 18 24 24 H 1.48504 * 109.47126 * 93.18515 * 23 21 19 25 25 H 1.48497 * 109.46987 * 213.18467 * 23 21 19 26 26 H 1.48500 * 109.47036 * 333.18431 * 23 21 19 27 27 C 1.46931 * 118.84772 * 54.15919 * 18 17 16 28 28 C 1.52410 * 110.24228 * 118.67747 * 13 12 10 29 29 H 1.08009 * 119.99429 * 0.02562 * 1 2 3 30 30 H 1.07992 * 120.00330 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.99734 * 179.97438 * 2 1 3 32 32 H 1.09007 * 109.46694 * 300.00117 * 4 3 2 33 33 H 1.08992 * 109.47169 * 59.99519 * 4 3 2 34 34 H 1.08996 * 109.47217 * 180.02562 * 4 3 2 35 35 H 1.08995 * 109.47200 * 180.02562 * 5 3 2 36 36 H 1.09003 * 109.47335 * 300.00624 * 5 3 2 37 37 H 1.09002 * 109.47291 * 59.99702 * 5 3 2 38 38 H 0.97000 * 119.99652 * 0.02562 * 8 6 3 39 39 H 1.08999 * 109.47335 * 299.99973 * 9 8 6 40 40 H 1.09000 * 109.47038 * 60.00579 * 9 8 6 41 41 H 1.08997 * 110.54383 * 335.87632 * 12 10 9 42 42 H 1.08995 * 110.54426 * 98.67665 * 12 10 9 43 43 H 1.09001 * 110.38856 * 142.41487 * 14 13 12 44 44 H 1.08996 * 110.39546 * 264.81011 * 14 13 12 45 45 H 1.09004 * 109.48277 * 57.39786 * 16 13 12 46 46 H 1.08997 * 109.48642 * 177.43883 * 16 13 12 47 47 H 1.09003 * 109.59354 * 186.54513 * 17 16 13 48 48 H 1.09006 * 109.59441 * 66.09061 * 17 16 13 49 49 H 0.97007 * 120.00436 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.59676 * 186.06934 * 27 18 17 51 51 H 1.09002 * 109.72153 * 65.68060 * 27 18 17 52 52 H 1.08999 * 109.48247 * 182.55114 * 28 13 12 53 53 H 1.08993 * 109.48723 * 302.58779 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0694 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9299 1.3849 1.2305 7 8 2.9347 0.4722 2.0290 8 7 3.6995 2.4707 1.4436 9 6 4.5413 2.5485 2.6400 10 6 5.3063 3.8735 2.6399 11 1 5.8603 3.9909 1.7086 12 6 6.2670 3.9403 3.8494 13 6 6.2023 5.4139 4.2918 14 6 5.2140 6.0702 3.3105 15 8 4.3960 4.9798 2.8264 16 6 7.5764 6.0619 4.1705 17 6 8.5581 5.3540 5.1113 18 7 7.9918 5.3490 6.4670 19 6 8.7079 5.8462 7.5230 20 1 8.1931 6.2528 8.3809 21 6 10.0955 5.8278 7.4907 22 7 10.7827 6.6377 8.2679 23 14 10.9875 4.6534 6.3441 24 1 11.2818 5.3417 5.0615 25 1 12.2591 4.2164 6.9745 26 1 10.1308 3.4685 6.0848 27 6 6.6434 4.8016 6.6699 28 6 5.6751 5.5136 5.7184 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 0.4431 2.4101 -0.8909 33 1 0.4424 2.4105 0.8890 34 1 1.6144 3.4119 -0.0011 35 1 3.4885 2.3298 -1.2490 36 1 3.6515 0.5575 -1.2492 37 1 2.3166 1.3282 -2.1392 38 1 3.6954 3.2009 0.8050 39 1 3.9143 2.4915 3.5298 40 1 5.2493 1.7198 2.6407 41 1 5.9213 3.2853 4.6491 42 1 7.2804 3.6755 3.5480 43 1 4.5987 6.8069 3.8270 44 1 5.7516 6.5352 2.4842 45 1 7.9302 5.9745 3.1432 46 1 7.5071 7.1150 4.4430 47 1 9.5095 5.8860 5.1146 48 1 8.7114 4.3284 4.7753 49 1 11.7524 6.6246 8.2456 50 1 6.3321 4.9693 7.7010 51 1 6.6446 3.7325 6.4577 52 1 5.5916 6.5625 6.0026 53 1 4.6944 5.0417 5.7773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733364032.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:44 Heat of formation + Delta-G solvation = -67.753435 kcal Electronic energy + Delta-G solvation = -30387.897576 eV Core-core repulsion = 26452.453360 eV Total energy + Delta-G solvation = -3935.444216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.63255 -41.07101 -38.54347 -37.33810 -35.97839 -35.03399 -33.14992 -32.36515 -32.03049 -31.14831 -28.57041 -28.30059 -26.99510 -25.40624 -24.75476 -24.38268 -22.73523 -22.47542 -21.88862 -19.91691 -19.59040 -18.59065 -18.01275 -17.66462 -17.23844 -16.93059 -16.54033 -16.32642 -16.10273 -15.91161 -15.62047 -15.29751 -15.10117 -15.02155 -14.83322 -14.55140 -14.27277 -14.08287 -13.75852 -13.49241 -13.34089 -13.27184 -13.20243 -13.07620 -12.81447 -12.68512 -12.62225 -12.42934 -12.28684 -12.13416 -12.10786 -12.04659 -11.67513 -11.64584 -11.56729 -11.17547 -11.14952 -10.83482 -10.70923 -10.57352 -10.29242 -10.14112 -8.90603 -8.16883 -5.47970 1.27664 1.29901 1.40699 1.49418 1.61270 2.23826 2.40743 2.85537 3.06378 3.34911 3.48431 3.58324 3.70922 3.77415 3.83243 3.96622 4.00343 4.09615 4.13148 4.17377 4.34720 4.36810 4.45489 4.50531 4.55410 4.65373 4.67995 4.69796 4.73858 4.77753 4.79724 4.80769 4.86165 4.87007 4.89821 4.97647 5.01480 5.06992 5.17152 5.23465 5.24105 5.25124 5.27128 5.28787 5.37511 5.52217 5.69987 5.82354 5.85918 5.87841 6.12491 6.51826 6.93027 7.21544 7.63541 8.03629 9.03205 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.002351 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.700824 B =11908.663434 C =12168.713350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.147 4.147 3 C -0.051 4.051 4 C -0.142 4.142 5 C -0.134 4.134 6 C 0.519 3.481 7 O -0.587 6.587 8 N -0.711 5.711 9 C 0.129 3.871 10 C 0.076 3.924 11 H 0.097 0.903 12 C -0.140 4.140 13 C -0.076 4.076 14 C 0.061 3.939 15 O -0.378 6.378 16 C -0.112 4.112 17 C 0.120 3.880 18 N -0.618 5.618 19 C -0.247 4.247 20 H 0.048 0.952 21 C -0.038 4.038 22 N -0.958 5.958 23 Si 0.948 3.052 24 H -0.271 1.271 25 H -0.314 1.314 26 H -0.261 1.261 27 C 0.143 3.857 28 C -0.109 4.109 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.415 0.585 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.057 0.943 47 H 0.046 0.954 48 H 0.035 0.965 49 H 0.261 0.739 50 H 0.048 0.952 51 H 0.033 0.967 52 H 0.054 0.946 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.105 -7.161 -24.650 31.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.165 4.165 3 C -0.054 4.054 4 C -0.199 4.199 5 C -0.192 4.192 6 C 0.307 3.693 7 O -0.467 6.467 8 N -0.363 5.363 9 C 0.005 3.995 10 C 0.019 3.981 11 H 0.114 0.886 12 C -0.178 4.178 13 C -0.077 4.077 14 C -0.015 4.015 15 O -0.297 6.297 16 C -0.151 4.151 17 C -0.005 4.005 18 N -0.343 5.343 19 C -0.376 4.376 20 H 0.066 0.934 21 C -0.233 4.233 22 N -0.605 5.605 23 Si 0.777 3.223 24 H -0.197 1.197 25 H -0.244 1.244 26 H -0.186 1.186 27 C 0.018 3.982 28 C -0.148 4.148 29 H 0.134 0.866 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.252 0.748 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.053 0.947 49 H 0.070 0.930 50 H 0.066 0.934 51 H 0.051 0.949 52 H 0.073 0.927 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.197 -7.751 -24.056 31.738 hybrid contribution 1.305 -0.168 0.459 1.393 sum -17.893 -7.919 -23.597 30.654 Atomic orbital electron populations 1.24170 0.95539 1.03276 0.99269 1.22559 0.96240 0.96634 1.01093 1.19926 0.95793 0.96369 0.93317 1.21976 0.98565 0.95963 1.03413 1.21839 0.99106 1.03034 0.95182 1.21075 0.79557 0.81232 0.87474 1.90685 1.67442 1.39720 1.48809 1.45848 1.44218 1.20952 1.25253 1.21364 0.93700 0.96176 0.88247 1.23194 0.89806 0.86252 0.98886 0.88550 1.23008 1.00431 0.96427 0.97913 1.21299 0.95400 0.95131 0.95867 1.23523 0.92361 0.89685 0.95930 1.89145 1.31919 1.21938 1.86704 1.21863 0.94297 0.99556 0.99415 1.21448 0.96240 0.97870 0.84911 1.44449 1.15555 1.71398 1.02897 1.18857 0.88933 1.31570 0.98288 0.93440 1.25931 0.97205 1.00140 0.99988 1.69974 1.06709 1.39037 1.44766 0.85881 0.76972 0.81041 0.78372 1.19727 1.24359 1.18553 1.21113 0.83877 0.95355 0.97825 1.21817 0.98172 1.00735 0.94032 0.86572 0.87558 0.88280 0.89064 0.92838 0.90495 0.90267 0.92756 0.89572 0.74763 0.92425 0.90281 0.90777 0.89810 0.88616 0.90333 0.89511 0.92407 0.93550 0.94671 0.93026 0.93360 0.94859 0.92678 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 13.70 67.78 0.93 -1.58 16 2 C -0.15 -2.44 8.00 25.64 0.21 -2.24 16 3 C -0.05 -0.73 0.84 -53.67 -0.05 -0.77 16 4 C -0.14 -1.44 7.02 71.98 0.51 -0.93 16 5 C -0.13 -1.26 8.35 71.98 0.60 -0.66 16 6 C 0.52 11.07 6.47 87.66 0.57 11.64 16 7 O -0.59 -18.20 16.03 -3.02 -0.05 -18.25 16 8 N -0.71 -12.21 5.34 -463.06 -2.47 -14.69 16 9 C 0.13 2.60 5.28 86.38 0.46 3.06 16 10 C 0.08 1.40 3.33 31.14 0.10 1.50 16 11 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 12 C -0.14 -3.21 4.96 31.48 0.16 -3.06 16 13 C -0.08 -1.94 0.69 -51.91 -0.04 -1.97 16 14 C 0.06 1.24 6.73 72.31 0.49 1.72 16 15 O -0.38 -7.76 11.35 -148.98 -1.69 -9.45 16 16 C -0.11 -3.33 4.64 30.50 0.14 -3.19 16 17 C 0.12 4.77 3.89 86.40 0.34 5.10 16 18 N -0.62 -28.40 2.76 -698.68 -1.93 -30.32 16 19 C -0.25 -14.00 10.03 84.03 0.84 -13.16 16 20 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 21 C -0.04 -2.24 5.23 84.86 0.44 -1.79 16 22 N -0.96 -60.50 13.97 21.65 0.30 -60.20 16 23 Si 0.95 46.26 24.35 68.60 1.67 47.93 16 24 H -0.27 -12.27 6.63 99.48 0.66 -11.61 16 25 H -0.31 -15.76 7.11 99.48 0.71 -15.06 16 26 H -0.26 -12.15 6.64 99.48 0.66 -11.49 16 27 C 0.14 5.41 6.20 86.40 0.54 5.94 16 28 C -0.11 -3.23 4.63 30.50 0.14 -3.09 16 29 H 0.12 1.23 5.69 -2.91 -0.02 1.21 16 30 H 0.11 1.25 8.06 -2.91 -0.02 1.22 16 31 H 0.10 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.09 0.59 7.50 -2.38 -0.02 0.57 16 33 H 0.05 0.68 7.49 -2.39 -0.02 0.67 16 34 H 0.08 0.60 7.57 -2.39 -0.02 0.58 16 35 H 0.08 0.49 7.56 -2.39 -0.02 0.47 16 36 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.42 4.90 7.31 -92.71 -0.68 4.22 16 39 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 1.86 6.32 -2.39 -0.02 1.84 16 42 H 0.08 1.93 6.57 -2.39 -0.02 1.91 16 43 H 0.10 1.88 7.85 -2.39 -0.02 1.86 16 44 H 0.08 1.32 7.83 -2.39 -0.02 1.30 16 45 H 0.09 2.04 8.12 -2.39 -0.02 2.02 16 46 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.05 2.08 4.47 -2.39 -0.01 2.07 16 48 H 0.04 1.34 5.81 -2.38 -0.01 1.33 16 49 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 50 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 51 H 0.03 1.20 6.85 -2.39 -0.02 1.19 16 52 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 53 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -73.83 396.65 2.32 -71.50 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.12 Total: 16.94 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 6.37 Total: -3.48 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -4.09 Total: -105.20 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -1.74 Total: -27.69 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.67 Total: 47.93 kcal Total: -73.83 2.32 -71.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733364032.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.751 kcal (2) G-P(sol) polarization free energy of solvation -73.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds