Wall clock time and date at job start Tue Mar 31 2020 21:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00084 * 2 1 4 4 C 1.53007 * 109.47151 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.47313 * 240.00495 * 3 2 1 6 6 C 1.50693 * 109.47391 * 120.00036 * 3 2 1 7 7 O 1.21285 * 119.99561 * 0.02562 * 6 3 2 8 8 N 1.34771 * 120.00416 * 180.02562 * 6 3 2 9 9 C 1.46507 * 120.00421 * 180.02562 * 8 6 3 10 10 C 1.52997 * 109.47420 * 180.02562 * 9 8 6 11 11 H 1.08994 * 110.41463 * 57.69810 * 10 9 8 12 12 C 1.54599 * 110.37014 * 180.02562 * 10 9 8 13 13 C 1.53994 * 103.88818 * 142.71061 * 12 10 9 14 14 C 1.53973 * 104.57526 * 359.87477 * 13 12 10 15 15 O 1.44475 * 110.36517 * 295.40436 * 10 9 8 16 16 C 1.52404 * 110.27078 * 118.41547 * 13 12 10 17 17 C 1.53290 * 109.42518 * 62.67477 * 16 13 12 18 18 N 1.46933 * 108.72322 * 53.67281 * 17 16 13 19 19 C 1.36940 * 120.58505 * 125.81548 * 18 17 16 20 20 H 1.08000 * 120.00211 * 331.91481 * 19 18 17 21 21 C 1.38813 * 119.99717 * 151.90799 * 19 18 17 22 22 N 1.31616 * 120.00086 * 335.52868 * 21 19 18 23 23 Si 1.86804 * 119.99780 * 155.53386 * 21 19 18 24 24 H 1.48501 * 109.47186 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.46922 * 299.99586 * 23 21 19 26 26 H 1.48496 * 109.47247 * 59.99615 * 23 21 19 27 27 C 1.46923 * 118.82969 * 306.09077 * 18 17 16 28 28 C 1.52415 * 110.25520 * 241.35993 * 13 12 10 29 29 H 1.07998 * 120.00050 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99985 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99985 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46990 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.47266 * 300.00481 * 4 3 2 34 34 H 1.09000 * 109.46868 * 59.99966 * 4 3 2 35 35 H 1.08993 * 109.46870 * 300.00217 * 5 3 2 36 36 H 1.09006 * 109.47187 * 59.99999 * 5 3 2 37 37 H 1.08998 * 109.47094 * 179.97438 * 5 3 2 38 38 H 0.96997 * 120.00293 * 0.02562 * 8 6 3 39 39 H 1.09002 * 109.46644 * 59.99631 * 9 8 6 40 40 H 1.09000 * 109.46963 * 300.00143 * 9 8 6 41 41 H 1.09002 * 110.54268 * 24.10940 * 12 10 9 42 42 H 1.09005 * 110.54620 * 261.31609 * 12 10 9 43 43 H 1.08995 * 110.38998 * 95.16551 * 14 13 12 44 44 H 1.08998 * 110.39300 * 217.55724 * 14 13 12 45 45 H 1.09005 * 109.47991 * 302.69067 * 16 13 12 46 46 H 1.08994 * 109.48185 * 182.66396 * 16 13 12 47 47 H 1.08998 * 109.59895 * 293.90299 * 17 16 13 48 48 H 1.08997 * 109.72294 * 173.51623 * 17 16 13 49 49 H 0.96994 * 120.00185 * 354.25184 * 22 21 19 50 50 H 1.09004 * 109.60202 * 173.68957 * 27 18 17 51 51 H 1.08999 * 109.59980 * 294.15341 * 27 18 17 52 52 H 1.08992 * 109.47897 * 57.31584 * 28 13 12 53 53 H 1.09004 * 109.47681 * 177.34469 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4681 0.0006 5 6 2.9431 1.3862 -1.2493 6 6 2.9299 1.3850 1.2304 7 8 2.9353 0.4717 2.0285 8 7 3.6987 2.4711 1.4439 9 6 4.5415 2.5485 2.6399 10 6 5.3054 3.8741 2.6406 11 1 4.6109 4.7132 2.6005 12 6 6.2030 3.9773 3.8951 13 6 7.4739 4.6805 3.3835 14 6 7.2078 4.9203 1.8860 15 8 6.2223 3.9266 1.5253 16 6 7.6690 6.0088 4.1047 17 6 7.8741 5.7508 5.6018 18 7 8.9708 4.7872 5.7684 19 6 10.0410 5.0815 6.5705 20 1 10.3377 6.1091 6.7196 21 6 10.7444 4.0588 7.1920 22 7 10.1575 2.9043 7.4264 23 14 12.5240 4.3212 7.6957 24 1 13.0449 3.0860 8.3345 25 1 13.3372 4.6372 6.4939 26 1 12.6047 5.4489 8.6585 27 6 8.9019 3.5050 5.0544 28 6 8.6871 3.7761 3.5659 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.6143 3.4120 0.0011 33 1 0.4422 2.4105 -0.8891 34 1 0.4430 2.4101 0.8909 35 1 3.6513 0.5578 -1.2494 36 1 2.3163 1.3285 -2.1393 37 1 3.4877 2.3304 -1.2495 38 1 3.6941 3.2016 0.8059 39 1 5.2501 1.7203 2.6391 40 1 3.9152 2.4900 3.5300 41 1 6.4423 2.9847 4.2768 42 1 5.7172 4.5772 4.6647 43 1 6.8123 5.9234 1.7265 44 1 8.1217 4.7754 1.3099 45 1 6.7872 6.6334 3.9610 46 1 8.5443 6.5169 3.7002 47 1 6.9596 5.3414 6.0309 48 1 8.1280 6.6840 6.1045 49 1 9.2116 2.7947 7.2417 50 1 9.8345 2.9582 5.1939 51 1 8.0693 2.9163 5.4395 52 1 8.5199 2.8340 3.0438 53 1 9.5706 4.2664 3.1572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733364033.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:47 Heat of formation + Delta-G solvation = -74.769010 kcal Electronic energy + Delta-G solvation = -30355.555985 eV Core-core repulsion = 26419.807550 eV Total energy + Delta-G solvation = -3935.748435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.66697 -41.09497 -38.55901 -37.35895 -36.04589 -35.22946 -32.70255 -32.38039 -31.76682 -31.13894 -28.33772 -28.28682 -27.04349 -25.53692 -24.77593 -24.06899 -22.71542 -22.41839 -21.90284 -19.98164 -19.61557 -19.05078 -18.05771 -17.64575 -17.09715 -16.65436 -16.51700 -16.27014 -16.09035 -15.68494 -15.54369 -15.50084 -15.21440 -15.10358 -14.79044 -14.67743 -14.26644 -13.82737 -13.47953 -13.37611 -13.32717 -13.27554 -13.16403 -13.09260 -12.86673 -12.68644 -12.50913 -12.31471 -12.25481 -12.13203 -12.05229 -11.92899 -11.69852 -11.65288 -11.63126 -11.22301 -11.08340 -10.85344 -10.65800 -10.46882 -10.30951 -10.18115 -8.91763 -8.24602 -5.40850 1.28656 1.56049 1.57934 1.63666 1.82262 2.20405 2.64761 2.81486 3.20261 3.44647 3.54409 3.56368 3.67165 3.76260 3.81556 3.94557 3.97729 4.06668 4.10111 4.16829 4.33318 4.35623 4.44117 4.49669 4.53886 4.61799 4.65169 4.69054 4.73480 4.76183 4.77650 4.80660 4.84325 4.86682 4.92168 4.96302 5.06376 5.08943 5.17210 5.22023 5.22988 5.23707 5.25017 5.27614 5.33980 5.51989 5.68798 5.81075 5.82452 5.84255 6.38462 6.49593 7.06898 7.19254 7.78338 8.23370 8.99601 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024166 B = 0.002261 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.394213 B =12382.823366 C =12872.568603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.149 4.149 3 C -0.050 4.050 4 C -0.141 4.141 5 C -0.134 4.134 6 C 0.518 3.482 7 O -0.588 6.588 8 N -0.709 5.709 9 C 0.129 3.871 10 C 0.079 3.921 11 H 0.104 0.896 12 C -0.136 4.136 13 C -0.075 4.075 14 C 0.062 3.938 15 O -0.380 6.380 16 C -0.107 4.107 17 C 0.141 3.859 18 N -0.616 5.616 19 C -0.352 4.352 20 H 0.051 0.949 21 C -0.079 4.079 22 N -0.945 5.945 23 Si 1.113 2.887 24 H -0.294 1.294 25 H -0.280 1.280 26 H -0.274 1.274 27 C 0.160 3.840 28 C -0.109 4.109 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.416 0.584 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.058 0.942 47 H 0.018 0.982 48 H 0.048 0.952 49 H 0.253 0.747 50 H 0.036 0.964 51 H 0.003 0.997 52 H 0.059 0.941 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.797 4.516 -20.464 28.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.168 4.168 3 C -0.053 4.053 4 C -0.199 4.199 5 C -0.192 4.192 6 C 0.305 3.695 7 O -0.468 6.468 8 N -0.361 5.361 9 C 0.005 3.995 10 C 0.021 3.979 11 H 0.122 0.878 12 C -0.175 4.175 13 C -0.076 4.076 14 C -0.014 4.014 15 O -0.299 6.299 16 C -0.146 4.146 17 C 0.016 3.984 18 N -0.341 5.341 19 C -0.482 4.482 20 H 0.069 0.931 21 C -0.275 4.275 22 N -0.587 5.587 23 Si 0.938 3.062 24 H -0.220 1.220 25 H -0.206 1.206 26 H -0.200 1.200 27 C 0.034 3.966 28 C -0.148 4.148 29 H 0.124 0.876 30 H 0.138 0.862 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.254 0.746 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.076 0.924 47 H 0.036 0.964 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.055 0.945 51 H 0.021 0.979 52 H 0.078 0.922 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.448 3.053 -19.424 26.288 hybrid contribution -0.847 0.467 0.084 0.971 sum -18.295 3.520 -19.340 26.854 Atomic orbital electron populations 1.24172 0.95330 1.03405 0.98969 1.22543 0.96342 0.96531 1.01367 1.19927 0.95780 0.96670 0.92939 1.21989 0.98436 0.95742 1.03695 1.21833 0.99065 1.02813 0.95467 1.21153 0.79679 0.81139 0.87508 1.90692 1.67714 1.39507 1.48919 1.45809 1.43649 1.21245 1.25380 1.21342 0.92799 0.96742 0.88622 1.23200 0.91806 0.96983 0.85875 0.87845 1.22953 0.95258 1.01257 0.97992 1.21298 0.94411 0.95737 0.96117 1.23528 0.92442 0.92655 0.92801 1.89108 1.40343 1.60786 1.39664 1.21815 1.01993 0.95458 0.95291 1.21118 0.89561 0.92434 0.95286 1.44321 1.21099 1.16741 1.51954 1.20222 1.08441 0.94450 1.25108 0.93119 1.27187 1.09280 0.94440 0.96623 1.70899 1.12364 1.28141 1.47319 0.82883 0.71473 0.75419 0.76464 1.22034 1.20606 1.19990 1.20669 0.97568 0.87589 0.90735 1.21762 0.97511 0.98947 0.96582 0.87578 0.86204 0.88715 0.90250 0.88944 0.92377 0.93370 0.89303 0.90440 0.74649 0.93184 0.90331 0.92462 0.89508 0.89542 0.88941 0.89021 0.92350 0.96372 0.93331 0.93702 0.94532 0.97937 0.92243 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 13.70 67.78 0.93 -1.65 16 2 C -0.15 -2.72 8.00 25.64 0.21 -2.51 16 3 C -0.05 -0.79 0.84 -53.67 -0.05 -0.84 16 4 C -0.14 -1.39 7.02 71.98 0.51 -0.89 16 5 C -0.13 -1.64 8.35 71.98 0.60 -1.04 16 6 C 0.52 12.23 6.47 87.66 0.57 12.80 16 7 O -0.59 -19.88 16.03 -3.04 -0.05 -19.93 16 8 N -0.71 -13.90 5.30 -463.06 -2.46 -16.36 16 9 C 0.13 3.05 5.29 86.38 0.46 3.50 16 10 C 0.08 1.66 3.34 31.14 0.10 1.76 16 11 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 12 C -0.14 -3.69 4.97 31.47 0.16 -3.53 16 13 C -0.08 -2.14 0.68 -51.91 -0.04 -2.18 16 14 C 0.06 1.38 6.72 72.31 0.49 1.86 16 15 O -0.38 -8.81 11.31 -148.98 -1.68 -10.49 16 16 C -0.11 -3.12 4.64 30.49 0.14 -2.98 16 17 C 0.14 5.56 6.21 86.39 0.54 6.09 16 18 N -0.62 -30.62 2.84 -699.61 -1.99 -32.61 16 19 C -0.35 -19.79 9.48 84.03 0.80 -18.99 16 20 H 0.05 2.83 7.94 -2.91 -0.02 2.81 16 21 C -0.08 -4.58 4.69 84.86 0.40 -4.18 16 22 N -0.94 -58.87 12.41 21.65 0.27 -58.60 16 23 Si 1.11 51.61 29.98 68.60 2.06 53.66 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 C 0.16 7.62 4.35 86.24 0.38 8.00 16 28 C -0.11 -4.00 4.61 30.34 0.14 -3.86 16 29 H 0.11 1.32 8.06 -2.91 -0.02 1.30 16 30 H 0.12 1.25 5.69 -2.91 -0.02 1.24 16 31 H 0.09 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.08 0.54 7.56 -2.39 -0.02 0.52 16 33 H 0.09 0.57 7.50 -2.39 -0.02 0.55 16 34 H 0.06 0.67 7.50 -2.39 -0.02 0.65 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.08 0.75 7.57 -2.39 -0.02 0.73 16 38 H 0.42 5.73 7.31 -92.71 -0.68 5.05 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.06 1.85 6.33 -2.39 -0.02 1.84 16 42 H 0.09 2.25 6.58 -2.38 -0.02 2.23 16 43 H 0.09 1.49 7.83 -2.39 -0.02 1.47 16 44 H 0.09 2.05 7.85 -2.39 -0.02 2.03 16 45 H 0.09 2.02 8.13 -2.38 -0.02 2.01 16 46 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.02 0.72 6.85 -2.39 -0.02 0.70 16 48 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 49 H 0.25 16.09 6.71 -92.71 -0.62 15.46 16 50 H 0.04 2.02 6.30 -2.38 -0.02 2.00 16 51 H 0.00 0.14 6.59 -2.39 -0.02 0.12 16 52 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 53 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -74.79 401.98 2.82 -71.97 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.35 Total: 21.00 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 6.32 Total: -8.63 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -4.18 Total: -107.58 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -1.73 Total: -30.42 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.06 Total: 53.66 kcal Total: -74.79 2.82 -71.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733364033.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.802 kcal (2) G-P(sol) polarization free energy of solvation -74.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds