Wall clock time and date at job start Tue Mar 31 2020 19:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47304 * 2 1 4 4 C 1.52997 * 109.47535 * 120.00238 * 2 1 3 5 5 C 1.53006 * 109.46772 * 62.95062 * 4 2 1 6 6 H 1.09000 * 109.52058 * 307.00062 * 5 4 2 7 7 C 1.53238 * 109.52799 * 67.13154 * 5 4 2 8 8 C 1.53239 * 108.56877 * 175.51776 * 7 5 4 9 9 C 1.50590 * 109.16571 * 304.38726 * 8 7 5 10 10 O 1.21219 * 119.36113 * 209.09435 * 9 8 7 11 11 N 1.34141 * 121.27400 * 29.09165 * 9 8 7 12 12 C 1.46502 * 118.70036 * 179.45597 * 11 9 8 13 13 N 1.46898 * 109.47457 * 287.90132 * 12 11 9 14 14 C 1.46895 * 111.00416 * 154.30643 * 13 12 11 15 15 C 1.50700 * 109.47272 * 190.00605 * 14 13 12 16 16 H 1.07993 * 119.99978 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99874 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00086 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00077 * 359.97438 * 17 15 14 20 20 H 1.48491 * 109.47591 * 89.99870 * 19 17 15 21 21 H 1.48498 * 109.47024 * 210.00357 * 19 17 15 22 22 H 1.48500 * 109.46942 * 329.99563 * 19 17 15 23 23 C 1.46902 * 111.00250 * 278.26263 * 13 12 11 24 24 C 1.53006 * 109.47379 * 77.38197 * 23 13 12 25 25 C 1.52994 * 117.49818 * 238.78488 * 24 23 13 26 26 C 1.52997 * 117.49682 * 170.15902 * 24 23 13 27 27 C 1.34136 * 122.59485 * 359.45661 * 11 9 8 28 28 O 1.21222 * 119.36375 * 180.56374 * 27 11 9 29 29 H 1.09009 * 109.46857 * 304.38458 * 1 2 3 30 30 H 1.08999 * 109.47114 * 64.38460 * 1 2 3 31 31 H 1.08997 * 109.47327 * 184.39324 * 1 2 3 32 32 H 1.09008 * 109.46621 * 240.00207 * 2 1 3 33 33 H 1.09001 * 109.46840 * 180.02562 * 3 2 1 34 34 H 1.08992 * 109.46776 * 300.00358 * 3 2 1 35 35 H 1.09001 * 109.46465 * 60.00371 * 3 2 1 36 36 H 1.08997 * 109.47509 * 302.95413 * 4 2 1 37 37 H 1.08997 * 109.47190 * 182.94585 * 4 2 1 38 38 H 1.09004 * 109.61689 * 55.79700 * 7 5 4 39 39 H 1.08996 * 109.77246 * 295.33817 * 7 5 4 40 40 H 1.09003 * 109.52107 * 64.29478 * 8 7 5 41 41 H 1.09002 * 109.52182 * 184.47892 * 8 7 5 42 42 H 1.09000 * 109.47511 * 47.90272 * 12 11 9 43 43 H 1.09008 * 109.46835 * 167.90158 * 12 11 9 44 44 H 1.09001 * 109.46834 * 310.00333 * 14 13 12 45 45 H 1.08996 * 109.46932 * 70.00144 * 14 13 12 46 46 H 0.97000 * 120.00420 * 179.97438 * 18 17 15 47 47 H 1.08995 * 109.47608 * 197.39051 * 23 13 12 48 48 H 1.09005 * 109.46927 * 317.38956 * 23 13 12 49 49 H 1.09002 * 115.54640 * 24.49516 * 24 23 13 50 50 H 1.08998 * 117.50280 * 359.97438 * 25 24 23 51 51 H 1.09009 * 117.49655 * 145.02292 * 25 24 23 52 52 H 1.08999 * 117.50068 * 214.97863 * 26 24 23 53 53 H 1.08996 * 117.50268 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5916 -2.1837 1.2125 6 1 0.5132 -2.2302 1.0606 7 6 2.3022 -2.9087 0.0646 8 6 1.9248 -4.3930 0.1171 9 6 2.2620 -4.9410 1.4785 10 8 2.5521 -6.1125 1.5925 11 7 2.2478 -4.1580 2.5675 12 6 2.5736 -4.7528 3.8661 13 7 1.4667 -5.6150 4.3014 14 6 1.9430 -6.6624 5.2145 15 6 0.8430 -7.6665 5.4446 16 1 -0.1142 -7.5391 4.9611 17 6 1.0585 -8.7474 6.2731 18 7 0.0984 -9.6234 6.4742 19 14 2.7140 -8.9675 7.1098 20 1 2.6996 -8.2780 8.4249 21 1 2.9777 -10.4147 7.3125 22 1 3.7810 -8.3847 6.2570 23 6 0.3953 -4.8237 4.9210 24 6 -0.4246 -4.1324 3.8297 25 6 -0.5065 -2.6051 3.8684 26 6 -1.7256 -3.4465 4.2513 27 6 1.9470 -2.8518 2.5145 28 8 1.9619 -2.1965 3.5342 29 1 -0.3633 0.5804 0.8482 30 1 -0.3633 0.4443 -0.9267 31 1 -0.3634 -1.0246 0.0787 32 1 1.8932 -0.5139 -0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6342 -0.2390 2.1384 37 1 3.1288 -0.6757 1.2759 38 1 3.3812 -2.8013 0.1761 39 1 1.9888 -2.4848 -0.8894 40 1 0.8559 -4.5037 -0.0656 41 1 2.4836 -4.9380 -0.6437 42 1 3.4830 -5.3468 3.7759 43 1 2.7279 -3.9614 4.5998 44 1 2.8057 -7.1630 4.7748 45 1 2.2293 -6.2129 6.1653 46 1 0.2501 -10.3840 7.0568 47 1 -0.2527 -5.4808 5.5011 48 1 0.8324 -4.0719 5.5782 49 1 -0.4023 -4.6110 2.8507 50 1 0.0234 -2.0928 4.6714 51 1 -0.5379 -2.0785 2.9144 52 1 -2.5591 -3.4734 3.5494 53 1 -1.9978 -3.4882 5.3060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121742325.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:31 Heat of formation + Delta-G solvation = -63.665376 kcal Electronic energy + Delta-G solvation = -31936.282593 eV Core-core repulsion = 28001.015648 eV Total energy + Delta-G solvation = -3935.266945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.73805 -39.87531 -39.23327 -37.96062 -37.14775 -36.02834 -34.92393 -34.09026 -30.72271 -30.08069 -28.50178 -27.90918 -26.17809 -25.95328 -24.01159 -23.59371 -23.17593 -22.48465 -21.40036 -20.50336 -19.49339 -19.00659 -18.34568 -18.00049 -17.27216 -16.80233 -16.62494 -16.16557 -15.93675 -15.82093 -15.56921 -15.30659 -15.16126 -14.91995 -14.71467 -14.53484 -14.29112 -14.04102 -13.83653 -13.59402 -13.49167 -13.31392 -13.06044 -12.89419 -12.83596 -12.63978 -12.51214 -12.38027 -12.23749 -12.14788 -11.89061 -11.84274 -11.65070 -11.59419 -11.36953 -11.30231 -11.28618 -10.98396 -10.95743 -10.84121 -10.75771 -10.51223 -9.23125 -8.32392 -6.35592 0.74941 1.29495 1.32260 1.42988 1.59697 2.01235 2.30249 2.88287 2.97076 3.03007 3.17104 3.64460 3.65377 3.76739 3.87822 4.00695 4.04008 4.07426 4.17323 4.19056 4.22696 4.26578 4.34850 4.41546 4.45626 4.52264 4.63204 4.67288 4.70830 4.77307 4.84492 4.87022 4.88515 4.91003 4.97757 5.00177 5.05646 5.08865 5.14453 5.19557 5.23279 5.24013 5.27740 5.29775 5.44353 5.45386 5.58104 5.66768 5.87873 6.05661 6.30512 6.50228 6.68305 6.74305 6.97427 7.26786 8.84285 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.003459 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.974160 B = 8094.026739 C = 8676.843676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.093 4.093 5 C -0.105 4.105 6 H 0.129 0.871 7 C -0.110 4.110 8 C -0.133 4.133 9 C 0.511 3.489 10 O -0.535 6.535 11 N -0.556 5.556 12 C 0.264 3.736 13 N -0.541 5.541 14 C 0.183 3.817 15 C -0.512 4.512 16 H 0.036 0.964 17 C 0.011 3.989 18 N -0.945 5.945 19 Si 0.945 3.055 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.254 1.254 23 C 0.099 3.901 24 C -0.155 4.155 25 C -0.144 4.144 26 C -0.178 4.178 27 C 0.525 3.475 28 O -0.519 6.519 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.026 0.974 45 H -0.009 1.009 46 H 0.268 0.732 47 H 0.056 0.944 48 H 0.028 0.972 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.106 0.894 52 H 0.109 0.891 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.747 24.156 -17.825 30.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.131 4.131 5 C -0.125 4.125 6 H 0.146 0.854 7 C -0.147 4.147 8 C -0.172 4.172 9 C 0.302 3.698 10 O -0.409 6.409 11 N -0.299 5.299 12 C 0.052 3.948 13 N -0.266 5.266 14 C 0.056 3.944 15 C -0.550 4.550 16 H 0.055 0.945 17 C -0.187 4.187 18 N -0.585 5.585 19 Si 0.769 3.231 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.178 1.178 23 C -0.029 4.029 24 C -0.174 4.174 25 C -0.181 4.181 26 C -0.216 4.216 27 C 0.316 3.684 28 O -0.393 6.393 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.044 0.956 45 H 0.008 0.992 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.046 0.954 49 H 0.107 0.893 50 H 0.105 0.895 51 H 0.124 0.876 52 H 0.128 0.872 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.694 23.502 -17.560 29.570 hybrid contribution 0.659 -0.740 1.880 2.125 sum 4.353 22.762 -15.680 27.981 Atomic orbital electron populations 1.21967 0.95086 1.02157 1.01994 1.21132 0.95980 0.96145 0.97575 1.21837 1.01070 0.95869 1.01831 1.21503 1.01164 0.90969 0.99486 1.21731 1.04270 0.96749 0.89779 0.85405 1.21895 1.01532 0.91319 1.00000 1.22056 1.06280 0.98429 0.90446 1.21956 0.74498 0.85618 0.87686 1.90781 1.44669 1.18350 1.87132 1.46779 1.62670 1.11145 1.09319 1.21911 0.93418 0.94211 0.85293 1.61406 1.10108 1.12885 1.42221 1.19814 0.95547 0.89583 0.89428 1.21110 0.99040 1.07709 1.27146 0.94535 1.25793 1.00807 0.95070 0.96986 1.70035 1.35000 1.14232 1.39274 0.85745 0.80062 0.77925 0.79415 1.18869 1.20333 1.17809 1.21554 0.92918 0.94107 0.94287 1.22134 1.00833 0.94985 0.99449 1.23080 1.00153 0.91564 1.03278 1.23083 0.92027 1.04247 1.02217 1.21529 0.73651 0.80156 0.93034 1.90661 1.48203 1.63206 1.37256 0.93409 0.91847 0.91977 0.88961 0.92589 0.91878 0.93454 0.91774 0.91527 0.90111 0.85025 0.85796 0.85597 0.90479 0.90729 0.95632 0.99158 0.92314 0.92552 0.95374 0.89282 0.89526 0.87559 0.87250 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.02 71.98 0.65 -0.61 16 2 C -0.09 -0.70 2.80 -10.79 -0.03 -0.73 16 3 C -0.15 -1.26 9.19 71.98 0.66 -0.60 16 4 C -0.09 -1.15 3.89 30.60 0.12 -1.03 16 5 C -0.10 -1.46 2.01 -11.49 -0.02 -1.48 16 6 H 0.13 1.49 5.27 -2.39 -0.01 1.48 16 7 C -0.11 -1.04 5.04 30.75 0.16 -0.88 16 8 C -0.13 -2.04 6.07 29.89 0.18 -1.86 16 9 C 0.51 15.04 7.39 87.72 0.65 15.69 16 10 O -0.54 -21.78 16.64 -2.84 -0.05 -21.83 16 11 N -0.56 -16.73 2.05 -768.12 -1.58 -18.31 16 12 C 0.26 9.98 4.77 170.81 0.82 10.80 16 13 N -0.54 -24.45 4.30 -913.15 -3.93 -28.37 16 14 C 0.18 9.49 3.74 85.56 0.32 9.81 16 15 C -0.51 -31.20 8.77 25.60 0.22 -30.97 16 16 H 0.04 2.49 7.58 -2.91 -0.02 2.46 16 17 C 0.01 0.67 5.47 84.66 0.46 1.13 16 18 N -0.94 -60.90 13.96 21.45 0.30 -60.61 16 19 Si 0.95 46.04 27.47 68.60 1.88 47.93 16 20 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.25 -11.78 6.54 99.48 0.65 -11.13 16 23 C 0.10 4.17 5.10 86.30 0.44 4.61 16 24 C -0.16 -5.26 4.10 -10.79 -0.04 -5.30 16 25 C -0.14 -3.86 6.72 30.59 0.21 -3.65 16 26 C -0.18 -5.03 10.25 30.59 0.31 -4.72 16 27 C 0.52 12.78 4.46 87.72 0.39 13.17 16 28 O -0.52 -15.16 12.05 -2.85 -0.03 -15.19 16 29 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.46 6.16 -2.39 -0.01 0.44 16 32 H 0.09 0.42 6.63 -2.38 -0.02 0.40 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 1.05 7.58 -2.39 -0.02 1.03 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.13 0.32 6.82 -2.39 -0.02 0.31 16 40 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 3.03 7.37 -2.39 -0.02 3.01 16 43 H 0.07 2.77 6.28 -2.38 -0.01 2.76 16 44 H 0.03 1.36 6.85 -2.39 -0.02 1.34 16 45 H -0.01 -0.46 7.55 -2.39 -0.02 -0.48 16 46 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 47 H 0.06 2.77 6.58 -2.39 -0.02 2.76 16 48 H 0.03 1.16 7.36 -2.38 -0.02 1.14 16 49 H 0.09 3.18 8.08 -2.39 -0.02 3.16 16 50 H 0.09 2.60 7.17 -2.39 -0.02 2.58 16 51 H 0.11 2.29 6.67 -2.38 -0.02 2.28 16 52 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 53 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -79.09 397.83 2.92 -76.18 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.83 Total: 16.82 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 5.49 Total: 3.38 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -5.20 Total: -107.29 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.08 Total: -37.02 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.88 Total: 47.93 kcal Total: -79.09 2.92 -76.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121742325.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.511 kcal (2) G-P(sol) polarization free energy of solvation -79.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds