Wall clock time and date at job start Tue Mar 31 2020 19:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47097 * 2 1 4 4 C 1.52994 * 109.47297 * 174.99972 * 3 2 1 5 5 C 1.53001 * 109.47474 * 185.00380 * 4 3 2 6 6 N 1.46498 * 109.47057 * 294.99935 * 3 2 1 7 7 C 1.46773 * 124.34728 * 119.99884 * 6 3 2 8 8 C 1.54478 * 105.46902 * 163.00376 * 7 6 3 9 9 H 1.09006 * 110.97254 * 267.29427 * 8 7 6 10 10 C 1.50703 * 110.96944 * 143.53469 * 8 7 6 11 11 O 1.21297 * 119.99636 * 0.02562 * 10 8 7 12 12 N 1.34775 * 120.00129 * 179.97438 * 10 8 7 13 13 C 1.37099 * 119.99708 * 180.02562 * 12 10 8 14 14 H 1.08000 * 120.00051 * 222.47770 * 13 12 10 15 15 C 1.38943 * 120.00290 * 42.47950 * 13 12 10 16 16 N 1.31413 * 120.00072 * 19.76191 * 15 13 12 17 17 Si 1.86797 * 120.00239 * 199.76140 * 15 13 12 18 18 H 1.48499 * 109.47475 * 59.99738 * 17 15 13 19 19 H 1.48499 * 109.47503 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47124 * 299.99857 * 17 15 13 21 21 C 1.46491 * 120.00152 * 0.02562 * 12 10 8 22 22 C 1.54268 * 110.03459 * 231.90996 * 21 12 10 23 23 C 1.54893 * 104.19557 * 217.10600 * 22 21 12 24 24 C 1.54883 * 102.74816 * 37.94031 * 23 22 21 25 25 C 1.53880 * 110.03329 * 114.74240 * 21 12 10 26 26 C 1.54630 * 101.76979 * 25.41869 * 8 7 6 27 27 C 1.34417 * 124.35441 * 300.02131 * 6 3 2 28 28 O 1.21281 * 124.93757 * 0.41024 * 27 6 3 29 29 H 1.09002 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47413 * 300.00256 * 1 2 3 31 31 H 1.09001 * 109.47027 * 59.99781 * 1 2 3 32 32 H 1.09000 * 109.47001 * 240.00379 * 2 1 3 33 33 H 1.09001 * 109.47339 * 119.99770 * 2 1 3 34 34 H 1.09006 * 109.46828 * 54.99763 * 3 2 1 35 35 H 1.09006 * 109.47236 * 305.00159 * 4 3 2 36 36 H 1.09000 * 109.47674 * 64.99974 * 4 3 2 37 37 H 1.08997 * 109.47166 * 179.97438 * 5 4 3 38 38 H 1.09006 * 109.46709 * 300.00102 * 5 4 3 39 39 H 1.09000 * 109.47002 * 59.99182 * 5 4 3 40 40 H 1.08999 * 110.24393 * 282.00055 * 7 6 3 41 41 H 1.08994 * 110.24293 * 44.00488 * 7 6 3 42 42 H 0.97000 * 120.00217 * 174.94294 * 16 15 13 43 43 H 1.09000 * 110.01977 * 353.34949 * 21 12 10 44 44 H 1.09004 * 110.48557 * 335.78034 * 22 21 12 45 45 H 1.08995 * 110.48995 * 98.42496 * 22 21 12 46 46 H 1.08997 * 110.75416 * 279.62447 * 23 22 21 47 47 H 1.09000 * 110.75609 * 156.25300 * 23 22 21 48 48 H 1.09007 * 110.48875 * 203.38068 * 24 23 22 49 49 H 1.09001 * 110.49039 * 80.74019 * 24 23 22 50 50 H 1.09006 * 110.03036 * 238.56703 * 25 21 12 51 51 H 1.08998 * 110.02867 * 359.97438 * 25 21 12 52 52 H 1.09001 * 110.48433 * 216.52641 * 26 8 7 53 53 H 1.08997 * 110.48968 * 93.87451 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1257 5 6 4.0644 2.8851 0.2512 6 7 1.6524 2.0975 -1.2518 7 6 0.8075 3.2949 -1.3329 8 6 1.0286 3.8598 -2.7535 9 1 1.8240 4.6051 -2.7576 10 6 -0.2485 4.4342 -3.3104 11 8 -1.2646 4.4077 -2.6484 12 7 -0.2615 4.9781 -4.5434 13 6 -1.4233 5.5011 -5.0497 14 1 -1.6969 5.3138 -6.0775 15 6 -2.2488 6.2720 -4.2406 16 7 -1.7687 6.8248 -3.1493 17 14 -4.0409 6.5229 -4.7039 18 1 -4.7256 5.2065 -4.7641 19 1 -4.7009 7.3774 -3.6844 20 1 -4.1212 7.1837 -6.0314 21 6 0.9658 5.0105 -5.3426 22 6 1.2294 6.4439 -5.8483 23 6 1.8058 6.2445 -7.2721 24 6 0.9764 5.0535 -7.8128 25 6 0.8049 4.1264 -6.5918 26 6 1.4524 2.5939 -3.5339 27 6 2.0245 1.6789 -2.4737 28 8 2.7178 0.7085 -2.6942 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6053 1.9816 0.8418 35 1 3.8570 0.8801 1.0113 36 1 4.0030 0.9837 -0.7596 37 1 5.1507 2.8863 0.3412 38 1 3.7722 3.4494 -0.6344 39 1 3.6262 3.3458 1.1365 40 1 -0.2398 3.0277 -1.1920 41 1 1.1153 4.0250 -0.5844 42 1 -2.3236 7.4222 -2.6237 43 1 1.8091 4.6634 -4.7457 44 1 0.2995 7.0111 -5.8892 45 1 1.9559 6.9462 -5.2095 46 1 2.8646 5.9894 -7.2279 47 1 1.6468 7.1342 -7.8813 48 1 1.5182 4.5409 -8.6078 49 1 0.0056 5.3961 -8.1710 50 1 1.5707 3.3508 -6.6014 51 1 -0.1862 3.6729 -6.6030 52 1 2.2121 2.8398 -4.2760 53 1 0.5877 2.1320 -4.0102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125346159.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:08 Heat of formation + Delta-G solvation = -90.764800 kcal Electronic energy + Delta-G solvation = -31980.370479 eV Core-core repulsion = 28043.928415 eV Total energy + Delta-G solvation = -3936.442064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.95512 -40.38557 -38.38650 -37.61158 -36.51578 -35.08701 -33.52284 -33.01963 -31.78253 -29.40014 -28.61313 -28.38779 -27.58565 -26.54428 -23.76160 -23.02716 -22.90735 -21.39337 -21.28613 -20.58121 -19.80612 -18.64994 -17.78844 -17.71413 -16.99481 -16.56326 -16.36260 -16.04300 -15.80318 -15.45970 -15.35711 -15.23552 -15.00604 -14.67142 -14.32909 -14.09359 -13.98611 -13.91722 -13.76927 -13.68493 -13.40965 -13.24909 -12.82268 -12.66248 -12.62016 -12.54169 -12.38842 -12.26100 -12.18956 -12.05907 -12.01135 -11.84877 -11.80170 -11.78125 -11.73993 -11.72235 -11.32515 -11.25327 -10.73117 -10.60695 -9.94159 -9.60112 -8.96914 -8.13785 -5.85055 1.39498 1.47557 1.49990 1.56918 1.98912 2.30601 2.49017 3.06594 3.29066 3.38122 3.54516 3.77834 3.88052 3.91359 3.96531 4.02850 4.07055 4.14858 4.28401 4.33508 4.43310 4.47636 4.54024 4.55148 4.56878 4.61096 4.67741 4.74991 4.84420 4.87218 4.90285 4.90763 4.93941 4.99310 5.02165 5.05196 5.08806 5.17184 5.18256 5.21716 5.22220 5.33571 5.33962 5.38993 5.49604 5.59209 5.63818 5.73112 5.74957 6.14393 6.30713 7.12519 7.18675 7.28689 7.80720 8.43672 8.95353 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.004232 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.142410 B = 6614.762815 C = 7845.151758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.151 3.849 4 C -0.133 4.133 5 C -0.146 4.146 6 N -0.598 5.598 7 C 0.129 3.871 8 C -0.104 4.104 9 H 0.111 0.889 10 C 0.474 3.526 11 O -0.582 6.582 12 N -0.451 5.451 13 C -0.342 4.342 14 H 0.075 0.925 15 C 0.029 3.971 16 N -0.864 5.864 17 Si 0.956 3.044 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.262 1.262 21 C 0.121 3.879 22 C -0.126 4.126 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.129 4.129 26 C -0.134 4.134 27 C 0.522 3.478 28 O -0.562 6.562 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.257 0.743 43 H 0.088 0.912 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.048 0.952 50 H 0.081 0.919 51 H 0.047 0.953 52 H 0.121 0.879 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.553 -6.366 2.192 13.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.049 3.951 4 C -0.171 4.171 5 C -0.204 4.204 6 N -0.331 5.331 7 C 0.006 3.994 8 C -0.127 4.127 9 H 0.129 0.871 10 C 0.262 3.738 11 O -0.463 6.463 12 N -0.171 5.171 13 C -0.469 4.469 14 H 0.093 0.907 15 C -0.178 4.178 16 N -0.499 5.499 17 Si 0.783 3.217 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.186 1.186 21 C 0.017 3.983 22 C -0.164 4.164 23 C -0.149 4.149 24 C -0.152 4.152 25 C -0.168 4.168 26 C -0.174 4.174 27 C 0.311 3.689 28 O -0.442 6.442 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.067 0.933 50 H 0.099 0.901 51 H 0.066 0.934 52 H 0.139 0.861 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.344 -6.831 2.683 13.511 hybrid contribution -1.475 0.577 -0.108 1.588 sum 9.869 -6.254 2.576 11.964 Atomic orbital electron populations 1.21701 0.95751 1.01713 1.01231 1.21898 0.96070 0.96024 1.03235 1.21342 0.95520 0.93369 0.84834 1.21880 0.93880 0.98375 1.02978 1.21708 1.01274 0.95824 1.01553 1.48405 1.49585 1.28769 1.06333 1.21820 0.94994 0.86224 0.96335 1.22007 0.97657 0.97464 0.95535 0.87136 1.20087 0.89158 0.80895 0.83662 1.90498 1.36643 1.60041 1.59144 1.43522 1.08006 1.51362 1.14219 1.18903 0.98751 1.31532 0.97748 0.90728 1.25806 1.02020 0.94413 0.95511 1.69907 1.37232 1.26592 1.16213 0.85581 0.80826 0.77370 0.77936 1.21140 1.21688 1.18645 1.22059 0.87436 0.95902 0.92935 1.22571 1.00343 0.96567 0.96914 1.22415 0.99659 0.98192 0.94671 1.22256 0.99681 0.96253 0.97047 1.22484 1.01413 0.98212 0.94654 1.22368 1.02905 0.94224 0.97916 1.20831 0.78859 0.84328 0.84885 1.90632 1.40094 1.29131 1.84386 0.92063 0.91794 0.95253 0.92695 0.88568 0.87961 0.88848 0.92627 0.91924 0.94204 0.91783 0.91531 0.89275 0.93381 0.89450 0.92820 0.92540 0.89821 0.91399 0.89915 0.93267 0.90080 0.93394 0.86095 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.80 71.98 0.71 -2.79 16 2 C -0.13 -3.05 5.36 30.60 0.16 -2.88 16 3 C 0.15 3.47 2.26 44.99 0.10 3.57 16 4 C -0.13 -2.76 5.36 30.59 0.16 -2.60 16 5 C -0.15 -2.85 9.80 71.98 0.71 -2.15 16 6 N -0.60 -16.89 1.74 -794.03 -1.38 -18.27 16 7 C 0.13 4.13 6.66 86.83 0.58 4.71 16 8 C -0.10 -3.59 2.50 -10.48 -0.03 -3.62 16 9 H 0.11 3.47 7.51 -2.38 -0.02 3.45 16 10 C 0.47 22.03 6.26 87.66 0.55 22.57 16 11 O -0.58 -32.48 13.15 -3.08 -0.04 -32.52 16 12 N -0.45 -20.55 2.42 -609.38 -1.48 -22.03 16 13 C -0.34 -17.68 7.22 84.04 0.61 -17.07 16 14 H 0.08 3.81 7.58 -2.91 -0.02 3.79 16 15 C 0.03 1.58 4.33 84.92 0.37 1.95 16 16 N -0.86 -49.80 11.68 21.66 0.25 -49.55 16 17 Si 0.96 44.59 29.60 68.60 2.03 46.62 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 21 C 0.12 4.23 2.65 45.72 0.12 4.35 16 22 C -0.13 -4.30 6.39 31.67 0.20 -4.10 16 23 C -0.11 -2.87 6.91 31.88 0.22 -2.65 16 24 C -0.11 -3.05 6.83 31.67 0.22 -2.83 16 25 C -0.13 -3.94 6.27 31.32 0.20 -3.74 16 26 C -0.13 -4.12 5.45 30.59 0.17 -3.96 16 27 C 0.52 16.58 7.37 87.90 0.65 17.23 16 28 O -0.56 -20.23 15.02 -3.03 -0.05 -20.28 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.03 0.85 7.75 -2.39 -0.02 0.83 16 32 H 0.05 1.54 6.62 -2.39 -0.02 1.52 16 33 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.10 2.05 8.07 -2.38 -0.02 2.03 16 35 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.05 1.45 6.65 -2.39 -0.02 1.43 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.04 0.90 7.75 -2.38 -0.02 0.89 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 2.51 6.96 -2.39 -0.02 2.50 16 41 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.26 14.50 8.32 -92.71 -0.77 13.73 16 43 H 0.09 2.69 4.56 -2.39 -0.01 2.68 16 44 H 0.05 2.28 6.80 -2.38 -0.02 2.27 16 45 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 49 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 51 H 0.05 1.71 7.37 -2.39 -0.02 1.70 16 52 H 0.12 3.19 7.00 -2.39 -0.02 3.18 16 53 H 0.09 3.14 7.89 -2.39 -0.02 3.12 16 Total: -1.00 -68.38 403.03 5.90 -62.48 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.87 Total: 27.57 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 5.69 Total: 5.98 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -2.60 Total: -89.85 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.09 Total: -52.80 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -68.38 5.90 -62.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125346159.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.282 kcal (2) G-P(sol) polarization free energy of solvation -68.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds