Wall clock time and date at job start Tue Mar 31 2020 19:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47514 * 2 1 4 4 C 1.53000 * 109.47154 * 175.00387 * 3 2 1 5 5 C 1.52998 * 109.46918 * 184.99970 * 4 3 2 6 6 N 1.46500 * 109.47017 * 295.00145 * 3 2 1 7 7 C 1.46767 * 124.34652 * 119.99827 * 6 3 2 8 8 C 1.54484 * 105.47249 * 197.01684 * 7 6 3 9 9 H 1.08996 * 110.97124 * 92.74647 * 8 7 6 10 10 C 1.50705 * 110.96555 * 216.46842 * 8 7 6 11 11 O 1.21286 * 120.00338 * 7.06363 * 10 8 7 12 12 N 1.34776 * 119.99400 * 187.06381 * 10 8 7 13 13 C 1.37094 * 120.00540 * 5.36515 * 12 10 8 14 14 H 1.08004 * 119.99851 * 233.44139 * 13 12 10 15 15 C 1.38947 * 120.00318 * 53.42919 * 13 12 10 16 16 N 1.31410 * 119.99864 * 18.85090 * 15 13 12 17 17 Si 1.86802 * 120.00234 * 198.85674 * 15 13 12 18 18 H 1.48500 * 109.47555 * 59.99581 * 17 15 13 19 19 H 1.48497 * 109.47438 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46626 * 299.99891 * 17 15 13 21 21 C 1.46503 * 119.99584 * 185.35839 * 12 10 8 22 22 C 1.54275 * 110.03354 * 237.90739 * 21 12 10 23 23 C 1.54964 * 104.15881 * 217.14057 * 22 21 12 24 24 C 1.54885 * 102.77767 * 37.88701 * 23 22 21 25 25 C 1.53881 * 110.02995 * 120.69531 * 21 12 10 26 26 C 1.54629 * 101.76312 * 334.58349 * 8 7 6 27 27 C 1.34419 * 124.35299 * 299.70168 * 6 3 2 28 28 O 1.21278 * 124.93934 * 359.57151 * 27 6 3 29 29 H 1.09007 * 109.46460 * 300.00155 * 1 2 3 30 30 H 1.09003 * 109.47255 * 59.99631 * 1 2 3 31 31 H 1.08995 * 109.47431 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46460 * 239.99845 * 2 1 3 33 33 H 1.08997 * 109.46876 * 120.00477 * 2 1 3 34 34 H 1.08997 * 109.47227 * 55.00174 * 3 2 1 35 35 H 1.08998 * 109.46890 * 304.99640 * 4 3 2 36 36 H 1.08995 * 109.47039 * 64.99832 * 4 3 2 37 37 H 1.09001 * 109.47248 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.47670 * 300.00005 * 5 4 3 39 39 H 1.09004 * 109.47324 * 60.00102 * 5 4 3 40 40 H 1.08996 * 110.24776 * 316.01844 * 7 6 3 41 41 H 1.09001 * 110.24714 * 78.01664 * 7 6 3 42 42 H 0.96998 * 120.00000 * 184.33983 * 16 15 13 43 43 H 1.08996 * 110.02285 * 359.29911 * 21 12 10 44 44 H 1.09002 * 110.48497 * 335.78614 * 22 21 12 45 45 H 1.08995 * 110.48444 * 98.42547 * 22 21 12 46 46 H 1.09004 * 110.71623 * 279.57144 * 23 22 21 47 47 H 1.09003 * 110.91805 * 156.29871 * 23 22 21 48 48 H 1.09007 * 110.48086 * 203.40318 * 24 23 22 49 49 H 1.09000 * 110.59657 * 80.82436 * 24 23 22 50 50 H 1.09006 * 110.02473 * 238.56883 * 25 21 12 51 51 H 1.08995 * 110.03130 * 359.94436 * 25 21 12 52 52 H 1.08997 * 110.48154 * 143.47716 * 26 8 7 53 53 H 1.08995 * 110.48569 * 265.98646 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5649 1.4441 0.1256 5 6 4.0646 2.8848 0.2510 6 7 1.6525 2.0974 -1.2518 7 6 0.8077 3.2948 -1.3328 8 6 0.3194 3.3564 -2.7971 9 1 -0.6421 2.8555 -2.9091 10 6 0.2413 4.7819 -3.2800 11 8 0.6643 5.6816 -2.5853 12 7 -0.2985 5.0568 -4.4839 13 6 -0.8756 4.0554 -5.2213 14 1 -0.5639 3.8879 -6.2418 15 6 -1.8613 3.2559 -4.6559 16 7 -2.5027 3.6631 -3.5836 17 14 -2.2746 1.6020 -5.4197 18 1 -1.0663 0.7388 -5.4155 19 1 -3.3526 0.9494 -4.6341 20 1 -2.7341 1.8034 -6.8175 21 6 -0.2687 6.4259 -5.0046 22 6 -1.7040 6.9133 -5.2921 23 6 -1.5646 7.7636 -6.5801 24 6 -0.5164 6.9723 -7.4012 25 6 0.4862 6.4637 -6.3449 26 6 1.4367 2.5827 -3.5348 27 6 2.0296 1.6824 -2.4734 28 8 2.7397 0.7240 -2.6929 29 1 -0.3632 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6056 1.9815 0.8418 35 1 3.8571 0.8799 1.0112 36 1 4.0029 0.9834 -0.7597 37 1 5.1509 2.8860 0.3410 38 1 3.7724 3.4492 -0.6345 39 1 3.6266 3.3456 1.1364 40 1 -0.0415 3.2038 -0.6556 41 1 1.3898 4.1842 -1.0915 42 1 -3.1458 3.0790 -3.1521 43 1 0.2134 7.0881 -4.2856 44 1 -2.3673 6.0657 -5.4646 45 1 -2.0713 7.5248 -4.4681 46 1 -1.1972 8.7625 -6.3448 47 1 -2.5130 7.8184 -7.1147 48 1 -0.0182 7.6275 -8.1159 49 1 -0.9859 6.1343 -7.9163 50 1 1.3343 7.1450 -6.2765 51 1 0.8312 5.4637 -6.6075 52 1 1.0177 1.9921 -4.3494 53 1 2.1917 3.2716 -3.9134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125346402.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:11 Heat of formation + Delta-G solvation = -97.080323 kcal Electronic energy + Delta-G solvation = -32108.719819 eV Core-core repulsion = 28172.003893 eV Total energy + Delta-G solvation = -3936.715926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.93109 -40.55063 -38.45870 -37.61989 -36.42446 -35.89759 -33.30347 -33.03257 -31.79916 -29.43130 -28.80502 -28.45288 -27.34910 -26.59190 -23.96281 -22.99200 -22.92366 -21.40409 -21.09939 -20.86816 -19.82111 -18.73509 -17.76720 -17.49852 -17.30091 -16.79071 -16.31370 -16.07718 -15.84887 -15.66484 -15.35894 -15.26590 -14.89368 -14.70070 -14.38118 -14.21920 -14.07877 -13.96198 -13.86341 -13.72344 -13.43538 -13.31524 -13.00777 -12.74759 -12.62906 -12.55482 -12.31425 -12.27438 -12.20534 -12.09525 -12.02743 -11.85384 -11.82683 -11.79457 -11.79004 -11.73115 -11.36487 -11.28816 -10.78943 -10.57459 -10.15615 -9.60384 -9.16285 -8.29509 -6.15893 1.40709 1.49004 1.52323 1.56040 1.97287 2.13611 2.31529 2.94221 3.03218 3.42690 3.64882 3.83102 3.90233 3.93623 4.01303 4.06607 4.11626 4.18757 4.27529 4.32360 4.43746 4.53025 4.55197 4.59997 4.61151 4.68466 4.72135 4.81950 4.83174 4.86174 4.88106 4.93650 4.94554 4.98077 5.02579 5.03809 5.11386 5.18292 5.19023 5.20311 5.27408 5.28017 5.33890 5.36379 5.44874 5.53910 5.57795 5.67207 5.74512 6.12741 6.14511 6.75198 7.02663 7.18503 7.66802 8.11878 8.73892 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013616 B = 0.004391 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.978903 B = 6374.586274 C = 7402.784461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.150 3.850 4 C -0.134 4.134 5 C -0.145 4.145 6 N -0.597 5.597 7 C 0.124 3.876 8 C -0.099 4.099 9 H 0.116 0.884 10 C 0.515 3.485 11 O -0.634 6.634 12 N -0.446 5.446 13 C -0.333 4.333 14 H 0.084 0.916 15 C 0.030 3.970 16 N -0.878 5.878 17 Si 0.939 3.061 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.264 1.264 21 C 0.121 3.879 22 C -0.116 4.116 23 C -0.112 4.112 24 C -0.109 4.109 25 C -0.122 4.122 26 C -0.127 4.127 27 C 0.522 3.478 28 O -0.565 6.565 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.029 0.971 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.271 0.729 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.039 0.961 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.059 0.941 50 H 0.066 0.934 51 H 0.059 0.941 52 H 0.100 0.900 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 -1.498 3.172 5.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.049 3.951 4 C -0.172 4.172 5 C -0.203 4.203 6 N -0.330 5.330 7 C 0.001 3.999 8 C -0.121 4.121 9 H 0.134 0.866 10 C 0.305 3.695 11 O -0.522 6.522 12 N -0.164 5.164 13 C -0.461 4.461 14 H 0.102 0.898 15 C -0.174 4.174 16 N -0.514 5.514 17 Si 0.764 3.236 18 H -0.191 1.191 19 H -0.211 1.211 20 H -0.189 1.189 21 C 0.017 3.983 22 C -0.155 4.155 23 C -0.150 4.150 24 C -0.146 4.146 25 C -0.160 4.160 26 C -0.168 4.168 27 C 0.310 3.690 28 O -0.445 6.445 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.078 0.922 50 H 0.085 0.915 51 H 0.078 0.922 52 H 0.118 0.882 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.503 -1.586 3.544 5.946 hybrid contribution -0.719 -0.690 -0.330 1.049 sum 3.785 -2.276 3.214 5.462 Atomic orbital electron populations 1.21711 0.95472 1.01834 1.01427 1.21895 0.96374 0.95747 1.03171 1.21375 0.95434 0.93542 0.84769 1.21895 0.94204 0.98102 1.03011 1.21696 1.01281 0.96008 1.01277 1.48381 1.49883 1.28509 1.06214 1.21942 0.94287 0.87236 0.96426 1.22062 1.01099 0.94955 0.93981 0.86637 1.20201 0.77158 0.89680 0.82427 1.90463 1.55024 1.49080 1.57667 1.43482 1.49684 1.06533 1.16664 1.19181 1.18076 1.09886 0.98967 0.89814 1.25943 0.93286 1.01473 0.96723 1.70109 1.23585 1.35902 1.21819 0.85813 0.78348 0.80179 0.79306 1.19127 1.21072 1.18877 1.21812 0.96171 0.85091 0.95210 1.22470 0.96619 0.99004 0.97357 1.22420 0.99454 0.98202 0.94939 1.22223 0.96113 0.99420 0.96880 1.22352 0.98178 1.01179 0.94318 1.22067 0.98119 0.98563 0.98039 1.20869 0.79227 0.83787 0.85098 1.90600 1.39735 1.29611 1.84584 0.91353 0.95162 0.92029 0.93034 0.88324 0.87598 0.88382 0.92909 0.91865 0.95164 0.91496 0.90026 0.90638 0.91890 0.92412 0.92030 0.94236 0.90761 0.90865 0.89882 0.92171 0.91487 0.92202 0.88157 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.80 71.98 0.71 -2.97 16 2 C -0.13 -3.34 5.36 30.59 0.16 -3.17 16 3 C 0.15 3.93 2.26 44.99 0.10 4.03 16 4 C -0.13 -3.29 5.35 30.59 0.16 -3.12 16 5 C -0.15 -3.52 9.80 71.98 0.71 -2.81 16 6 N -0.60 -19.76 1.74 -794.04 -1.38 -21.14 16 7 C 0.12 4.52 6.72 86.83 0.58 5.10 16 8 C -0.10 -4.15 2.51 -10.48 -0.03 -4.18 16 9 H 0.12 5.21 4.69 -2.39 -0.01 5.20 16 10 C 0.52 24.46 6.25 87.66 0.55 25.01 16 11 O -0.63 -32.71 14.85 -3.05 -0.05 -32.76 16 12 N -0.45 -20.48 2.35 -609.35 -1.43 -21.91 16 13 C -0.33 -15.16 6.56 84.04 0.55 -14.61 16 14 H 0.08 3.75 7.22 -2.91 -0.02 3.73 16 15 C 0.03 1.39 3.37 84.93 0.29 1.68 16 16 N -0.88 -42.86 11.80 21.66 0.26 -42.60 16 17 Si 0.94 37.30 29.60 68.60 2.03 39.33 16 18 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.29 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 21 C 0.12 5.02 3.29 45.72 0.15 5.17 16 22 C -0.12 -4.53 6.42 31.70 0.20 -4.32 16 23 C -0.11 -3.28 6.91 31.91 0.22 -3.06 16 24 C -0.11 -3.09 6.83 31.66 0.22 -2.88 16 25 C -0.12 -4.15 6.26 31.32 0.20 -3.96 16 26 C -0.13 -5.01 6.01 30.59 0.18 -4.83 16 27 C 0.52 19.93 7.38 87.90 0.65 20.58 16 28 O -0.56 -23.67 15.02 -3.02 -0.05 -23.71 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.03 0.91 7.75 -2.39 -0.02 0.90 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.59 6.67 -2.38 -0.02 1.58 16 33 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.11 2.36 8.07 -2.39 -0.02 2.34 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.60 6.60 -2.39 -0.02 1.59 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.03 0.89 7.75 -2.39 -0.02 0.87 16 39 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.08 2.92 6.88 -2.39 -0.02 2.91 16 42 H 0.27 12.75 8.31 -92.71 -0.77 11.98 16 43 H 0.06 2.60 6.95 -2.39 -0.02 2.59 16 44 H 0.06 2.76 7.03 -2.39 -0.02 2.74 16 45 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 47 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 49 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 51 H 0.06 2.18 6.93 -2.39 -0.02 2.16 16 52 H 0.10 4.01 8.14 -2.39 -0.02 3.99 16 53 H 0.09 3.68 7.89 -2.39 -0.02 3.66 16 Total: -1.00 -57.83 404.49 5.86 -51.98 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: 0.87 Total: 39.16 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 5.60 Total: 11.66 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -2.56 Total: -85.65 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -0.09 Total: -56.47 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Total: -57.83 5.86 -51.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125346402.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.104 kcal (2) G-P(sol) polarization free energy of solvation -57.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds