Wall clock time and date at job start Tue Mar 31 2020 19:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47065 * 2 1 4 4 C 1.52999 * 109.46720 * 174.99891 * 3 2 1 5 5 C 1.53005 * 109.46547 * 184.99911 * 4 3 2 6 6 N 1.46493 * 109.46895 * 295.00163 * 3 2 1 7 7 C 1.46763 * 124.35186 * 119.95307 * 6 3 2 8 8 C 1.54482 * 105.47685 * 197.03231 * 7 6 3 9 9 H 1.08998 * 110.97389 * 216.46306 * 8 7 6 10 10 C 1.50695 * 110.96704 * 92.69858 * 8 7 6 11 11 O 1.21283 * 120.00339 * 346.17077 * 10 8 7 12 12 N 1.34777 * 120.00230 * 166.16167 * 10 8 7 13 13 C 1.46505 * 119.99441 * 5.30560 * 12 10 8 14 14 C 1.50694 * 109.47363 * 94.14803 * 13 12 10 15 15 H 1.07998 * 120.00291 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00128 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99852 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00280 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47154 * 89.99342 * 18 16 14 20 20 H 1.48492 * 109.47041 * 210.00033 * 18 16 14 21 21 H 1.48502 * 109.46553 * 329.99804 * 18 16 14 22 22 C 1.46501 * 120.00609 * 185.29681 * 12 10 8 23 23 C 1.52999 * 109.46598 * 94.76425 * 22 12 10 24 24 C 1.53005 * 117.49642 * 245.60358 * 23 22 12 25 25 C 1.53006 * 117.49682 * 176.94833 * 23 22 12 26 26 C 1.54634 * 101.76285 * 334.58790 * 8 7 6 27 27 C 1.34425 * 124.34745 * 299.97108 * 6 3 2 28 28 O 1.21275 * 124.94529 * 359.61519 * 27 6 3 29 29 H 1.08999 * 109.46938 * 60.00196 * 1 2 3 30 30 H 1.08996 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46865 * 299.99989 * 1 2 3 32 32 H 1.08995 * 109.47139 * 239.99573 * 2 1 3 33 33 H 1.08999 * 109.46938 * 119.99804 * 2 1 3 34 34 H 1.09007 * 109.46777 * 55.00120 * 3 2 1 35 35 H 1.08998 * 109.47541 * 304.99687 * 4 3 2 36 36 H 1.08994 * 109.47027 * 65.00568 * 4 3 2 37 37 H 1.09003 * 109.47122 * 180.02562 * 5 4 3 38 38 H 1.08999 * 109.47479 * 299.99842 * 5 4 3 39 39 H 1.09000 * 109.47169 * 59.99935 * 5 4 3 40 40 H 1.09003 * 110.24477 * 78.03451 * 7 6 3 41 41 H 1.08998 * 110.24451 * 316.03502 * 7 6 3 42 42 H 1.09003 * 109.46619 * 214.14822 * 13 12 10 43 43 H 1.09001 * 109.47063 * 334.14283 * 13 12 10 44 44 H 0.96997 * 119.99865 * 180.02562 * 17 16 14 45 45 H 1.08998 * 109.47511 * 214.76000 * 22 12 10 46 46 H 1.08996 * 109.46722 * 334.76794 * 22 12 10 47 47 H 1.08996 * 115.55526 * 31.27427 * 23 22 12 48 48 H 1.08997 * 117.49815 * 0.02562 * 24 23 22 49 49 H 1.08996 * 117.49924 * 145.02448 * 24 23 22 50 50 H 1.09001 * 117.49854 * 214.97625 * 25 23 22 51 51 H 1.08998 * 117.49610 * 359.97402 * 25 23 22 52 52 H 1.08994 * 110.48589 * 143.47558 * 26 8 7 53 53 H 1.09004 * 110.48042 * 265.98355 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 0.1258 5 6 4.0645 2.8850 0.2511 6 7 1.6524 2.0975 -1.2517 7 6 0.8067 3.2942 -1.3329 8 6 0.3186 3.3555 -2.7973 9 1 0.2613 4.3863 -3.1467 10 6 -1.0097 2.6610 -2.9525 11 8 -1.4252 1.9422 -2.0684 12 7 -1.7363 2.8388 -4.0737 13 6 -1.1845 3.6121 -5.1890 14 6 -0.5275 2.6777 -6.1718 15 1 -0.5218 1.6140 -5.9847 16 6 0.0655 3.1805 -7.3105 17 7 0.0572 4.4755 -7.5392 18 14 0.8793 2.0221 -8.5293 19 1 -0.1177 1.5869 -9.5401 20 1 1.9983 2.7238 -9.2077 21 1 1.4041 0.8345 -7.8085 22 6 -3.0775 2.2586 -4.1772 23 6 -4.1179 3.3034 -3.7686 24 6 -4.9325 3.0315 -2.5023 25 6 -5.5929 2.9119 -3.8780 26 6 1.4366 2.5825 -3.5348 27 6 2.0254 1.6793 -2.4736 28 8 2.7306 0.7174 -2.6934 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6054 1.9815 0.8419 35 1 3.8571 0.8800 1.0113 36 1 4.0029 0.9836 -0.7596 37 1 5.1509 2.8864 0.3403 38 1 3.7723 3.4493 -0.6345 39 1 3.6263 3.3458 1.1365 40 1 1.3882 4.1840 -1.0917 41 1 -0.0425 3.2025 -0.6558 42 1 -1.9876 4.1563 -5.6861 43 1 -0.4464 4.3193 -4.8107 44 1 0.4741 4.8292 -8.3404 45 1 -3.2602 1.9469 -5.2056 46 1 -3.1515 1.3946 -3.5169 47 1 -3.8546 4.3387 -3.9850 48 1 -4.7269 2.1085 -1.9602 49 1 -5.2054 3.8879 -1.8859 50 1 -6.3001 3.6897 -4.1661 51 1 -5.8221 1.9102 -4.2415 52 1 1.0181 1.9915 -4.3495 53 1 2.1912 3.2720 -3.9134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170904277.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:02 Heat of formation + Delta-G solvation = -71.335074 kcal Electronic energy + Delta-G solvation = -31776.726598 eV Core-core repulsion = 27841.127070 eV Total energy + Delta-G solvation = -3935.599528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.04114 -40.38100 -38.26655 -37.57570 -36.49178 -36.32991 -34.38912 -32.96097 -31.94075 -29.55459 -28.75621 -28.01996 -27.05650 -24.91763 -23.74868 -23.16274 -22.93645 -22.85863 -21.47446 -19.93220 -19.78874 -18.48829 -18.41784 -17.73595 -17.41005 -16.72349 -16.24915 -16.17194 -16.06953 -15.57684 -15.37317 -15.29828 -14.90383 -14.68445 -14.55905 -14.31166 -13.91302 -13.87449 -13.77385 -13.62136 -13.41966 -13.33116 -13.12949 -13.00429 -12.71536 -12.60906 -12.48083 -12.46178 -12.35578 -12.31327 -11.97453 -11.93718 -11.84059 -11.73354 -11.71518 -11.68849 -11.27052 -10.82129 -10.65616 -10.55067 -10.41731 -9.55248 -9.38379 -8.18654 -6.29265 1.37797 1.42997 1.50497 1.61940 1.77230 2.11672 2.27471 2.44252 2.97754 3.12203 3.41004 3.55810 3.68339 3.83389 3.89471 3.97781 4.05637 4.06804 4.15303 4.18925 4.38079 4.39938 4.46864 4.52228 4.59788 4.63239 4.64186 4.70938 4.76134 4.79788 4.86597 4.88959 4.90099 4.98919 5.03387 5.04213 5.07012 5.09317 5.11581 5.25903 5.26448 5.28557 5.29479 5.33497 5.41140 5.53554 5.69322 5.81659 5.91635 6.09797 6.22146 6.63610 6.86051 7.25752 7.35453 7.46974 8.86177 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008638 B = 0.005028 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.841470 B = 5566.988656 C = 7793.052753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C 0.159 3.841 4 C -0.137 4.137 5 C -0.142 4.142 6 N -0.594 5.594 7 C 0.126 3.874 8 C -0.112 4.112 9 H 0.133 0.867 10 C 0.519 3.481 11 O -0.570 6.570 12 N -0.594 5.594 13 C 0.253 3.747 14 C -0.535 4.535 15 H 0.043 0.957 16 C 0.035 3.965 17 N -0.911 5.911 18 Si 0.935 3.065 19 H -0.276 1.276 20 H -0.279 1.279 21 H -0.281 1.281 22 C 0.150 3.850 23 C -0.177 4.177 24 C -0.167 4.167 25 C -0.163 4.163 26 C -0.139 4.139 27 C 0.516 3.484 28 O -0.576 6.576 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.019 0.981 43 H 0.044 0.956 44 H 0.267 0.733 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.101 0.899 50 H 0.109 0.891 51 H 0.098 0.902 52 H 0.089 0.911 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.351 1.743 15.546 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.058 3.942 4 C -0.175 4.175 5 C -0.200 4.200 6 N -0.327 5.327 7 C 0.003 3.997 8 C -0.134 4.134 9 H 0.150 0.850 10 C 0.308 3.692 11 O -0.451 6.451 12 N -0.323 5.323 13 C 0.132 3.868 14 C -0.574 4.574 15 H 0.061 0.939 16 C -0.166 4.166 17 N -0.550 5.550 18 Si 0.762 3.238 19 H -0.202 1.202 20 H -0.204 1.204 21 H -0.206 1.206 22 C 0.027 3.973 23 C -0.196 4.196 24 C -0.204 4.204 25 C -0.200 4.200 26 C -0.179 4.179 27 C 0.305 3.695 28 O -0.457 6.457 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.108 0.892 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.110 0.890 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.115 0.885 48 H 0.105 0.895 49 H 0.120 0.880 50 H 0.127 0.873 51 H 0.116 0.884 52 H 0.108 0.892 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.144 0.998 15.826 15.899 hybrid contribution 0.426 -0.737 -1.606 1.818 sum -0.718 0.261 14.220 14.241 Atomic orbital electron populations 1.21799 0.95257 1.00956 1.02996 1.21880 0.96492 0.96788 1.02117 1.21232 0.95017 0.92903 0.85086 1.21903 0.94344 0.98863 1.02405 1.21686 1.01022 0.95319 1.01943 1.48260 1.49841 1.28982 1.05574 1.22148 0.94893 0.87944 0.94698 1.22219 0.91599 1.02194 0.97365 0.84971 1.20497 0.86103 0.81201 0.81444 1.90537 1.72572 1.39888 1.42137 1.48097 1.15680 1.52518 1.16004 1.19115 0.93793 0.90632 0.83216 1.21523 1.36305 0.93447 1.06075 0.93875 1.25351 0.96372 0.95983 0.98867 1.69953 1.45005 1.12225 1.27820 0.85907 0.78628 0.79470 0.79819 1.20162 1.20445 1.20643 1.20823 0.80823 0.94770 1.00860 1.22583 0.93027 0.99830 1.04196 1.22986 1.03558 1.03209 0.90674 1.23012 0.93730 1.03406 0.99858 1.22269 0.98474 0.99545 0.97660 1.21015 0.79110 0.83973 0.85395 1.90611 1.40550 1.29858 1.84693 0.92378 0.93999 0.91816 0.94205 0.89229 0.86912 0.89189 0.93663 0.92452 0.93859 0.90851 0.87223 0.89005 0.96258 0.93835 0.92360 0.91503 0.91400 0.88538 0.89506 0.88011 0.87315 0.88390 0.89230 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 9.80 71.98 0.71 -3.66 16 2 C -0.13 -3.62 5.36 30.60 0.16 -3.45 16 3 C 0.16 3.80 2.25 44.99 0.10 3.90 16 4 C -0.14 -3.06 5.36 30.60 0.16 -2.89 16 5 C -0.14 -2.64 9.80 71.98 0.71 -1.94 16 6 N -0.59 -16.85 1.74 -794.03 -1.38 -18.23 16 7 C 0.13 3.06 6.53 86.83 0.57 3.63 16 8 C -0.11 -3.47 2.53 -10.48 -0.03 -3.50 16 9 H 0.13 3.70 6.70 -2.39 -0.02 3.68 16 10 C 0.52 19.07 6.83 87.66 0.60 19.67 16 11 O -0.57 -22.15 12.86 -3.04 -0.04 -22.18 16 12 N -0.59 -23.01 2.46 -826.16 -2.03 -25.04 16 13 C 0.25 11.08 4.90 85.63 0.42 11.50 16 14 C -0.53 -26.56 7.64 25.60 0.20 -26.36 16 15 H 0.04 2.27 7.71 -2.91 -0.02 2.25 16 16 C 0.04 1.80 5.46 84.66 0.46 2.26 16 17 N -0.91 -47.74 13.29 21.45 0.28 -47.46 16 18 Si 0.93 42.06 29.54 68.60 2.03 44.08 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 22 C 0.15 5.35 5.80 86.38 0.50 5.85 16 23 C -0.18 -5.25 6.01 -10.79 -0.06 -5.31 16 24 C -0.17 -4.20 10.18 30.62 0.31 -3.89 16 25 C -0.16 -3.83 10.25 30.62 0.31 -3.52 16 26 C -0.14 -5.00 6.06 30.59 0.19 -4.82 16 27 C 0.52 18.93 7.37 87.90 0.65 19.58 16 28 O -0.58 -25.26 15.02 -3.02 -0.05 -25.30 16 29 H 0.06 2.05 5.21 -2.39 -0.01 2.04 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.37 6.65 -2.39 -0.02 1.36 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.11 2.08 8.07 -2.38 -0.02 2.06 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.04 1.35 6.62 -2.39 -0.02 1.33 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.04 0.91 7.75 -2.39 -0.02 0.89 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 40 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.09 2.23 7.27 -2.39 -0.02 2.21 16 42 H 0.02 0.91 8.10 -2.39 -0.02 0.89 16 43 H 0.04 1.89 5.86 -2.39 -0.01 1.88 16 44 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 45 H 0.07 2.50 8.11 -2.39 -0.02 2.48 16 46 H 0.07 2.49 6.96 -2.39 -0.02 2.47 16 47 H 0.10 3.01 8.14 -2.39 -0.02 3.00 16 48 H 0.09 2.31 8.04 -2.39 -0.02 2.30 16 49 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 50 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 51 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 52 H 0.09 3.93 5.99 -2.39 -0.01 3.92 16 53 H 0.12 3.92 8.14 -2.38 -0.02 3.90 16 Total: -1.00 -62.16 413.41 5.65 -56.52 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.88 Total: 30.54 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.95 Total: 7.06 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -3.12 Total: -90.72 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -0.08 Total: -47.49 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -62.16 5.65 -56.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170904277.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.818 kcal (2) G-P(sol) polarization free energy of solvation -62.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds