Wall clock time and date at job start Tue Mar 31 2020 20:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00001 * 2 1 4 4 N 1.46496 * 109.47578 * 121.57964 * 3 2 1 5 5 C 1.46505 * 119.99986 * 94.28120 * 4 3 2 6 6 C 1.50704 * 109.46700 * 86.86322 * 5 4 3 7 7 H 1.08000 * 120.00134 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99844 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99810 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00029 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47258 * 59.99944 * 10 8 6 12 12 H 1.48502 * 109.47329 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47182 * 299.99975 * 10 8 6 14 14 C 1.34783 * 120.00242 * 274.29103 * 4 3 2 15 15 O 1.21281 * 120.00024 * 4.61250 * 14 4 3 16 16 C 1.50696 * 120.00085 * 184.61420 * 14 4 3 17 17 H 1.08997 * 109.49852 * 328.00107 * 16 14 4 18 18 C 1.53045 * 109.49962 * 88.06426 * 16 14 4 19 19 C 1.53035 * 109.53848 * 181.31775 * 18 16 14 20 20 C 1.53196 * 109.31371 * 298.63250 * 19 18 16 21 21 N 1.46927 * 108.77157 * 54.63707 * 20 19 18 22 22 C 1.34776 * 120.63101 * 126.41684 * 21 20 19 23 23 O 1.21279 * 120.00086 * 183.41944 * 22 21 20 24 24 C 1.50700 * 119.99647 * 3.41070 * 22 21 20 25 25 C 1.53005 * 109.47199 * 174.00273 * 24 22 21 26 26 C 1.52991 * 109.47629 * 294.00387 * 24 22 21 27 27 C 1.53003 * 109.46980 * 54.00743 * 24 22 21 28 28 C 1.46926 * 118.74232 * 306.38874 * 21 20 19 29 29 H 1.07999 * 119.99412 * 185.06984 * 1 2 3 30 30 H 1.07994 * 120.00096 * 5.06911 * 1 2 3 31 31 H 1.08006 * 120.00513 * 179.72133 * 2 1 3 32 32 H 1.09000 * 109.47490 * 241.58104 * 3 2 1 33 33 H 1.09001 * 109.47361 * 1.58086 * 3 2 1 34 34 H 1.09003 * 109.47203 * 206.85966 * 5 4 3 35 35 H 1.08998 * 109.47204 * 326.86781 * 5 4 3 36 36 H 0.97008 * 119.99541 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.45780 * 301.34058 * 18 16 14 38 38 H 1.08994 * 109.45934 * 61.29370 * 18 16 14 39 39 H 1.08993 * 109.50161 * 58.58437 * 19 18 16 40 40 H 1.09007 * 109.49460 * 178.65571 * 19 18 16 41 41 H 1.08993 * 109.58888 * 174.42628 * 20 19 18 42 42 H 1.09001 * 109.58913 * 294.85227 * 20 19 18 43 43 H 1.09004 * 109.46473 * 59.99982 * 25 24 22 44 44 H 1.08996 * 109.47733 * 180.02562 * 25 24 22 45 45 H 1.09002 * 109.47186 * 300.00674 * 25 24 22 46 46 H 1.09002 * 109.47297 * 53.04137 * 26 24 22 47 47 H 1.08999 * 109.47636 * 173.03741 * 26 24 22 48 48 H 1.08995 * 109.47577 * 293.04516 * 26 24 22 49 49 H 1.09000 * 109.46951 * 68.79901 * 27 24 22 50 50 H 1.09000 * 109.46774 * 188.79659 * 27 24 22 51 51 H 1.08995 * 109.47201 * 308.79636 * 27 24 22 52 52 H 1.09000 * 109.58911 * 293.82558 * 28 21 20 53 53 H 1.08993 * 109.58964 * 173.39646 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9341 1.3664 1.1766 5 6 4.3332 0.9438 1.0755 6 6 5.1772 2.1060 0.6192 7 1 4.7175 3.0636 0.4245 8 6 6.5362 1.9466 0.4503 9 7 7.0961 0.7805 0.6879 10 14 7.5825 3.3872 -0.1145 11 1 7.4706 4.4955 0.8676 12 1 9.0007 2.9589 -0.2172 13 1 7.1082 3.8529 -1.4425 14 6 2.4479 1.8115 2.3523 15 8 1.2703 2.0820 2.4581 16 6 3.3674 1.9732 3.5352 17 1 4.1552 1.2213 3.4890 18 6 3.9924 3.3700 3.5093 19 6 4.9515 3.5236 4.6919 20 6 4.1710 3.3673 6.0008 21 7 3.4495 2.0878 5.9713 22 6 3.5922 1.1957 6.9714 23 8 3.0404 0.1177 6.9058 24 6 4.4377 1.5377 8.1711 25 6 4.3136 0.4269 9.2159 26 6 5.9000 1.6736 7.7425 27 6 3.9576 2.8599 8.7731 28 6 2.5690 1.7993 4.8310 29 1 -0.5399 -0.9317 0.0827 30 1 -0.5400 0.9316 -0.0826 31 1 1.8501 -0.9353 0.0045 32 1 2.6687 1.3753 -0.9038 33 1 1.3555 2.1334 0.0284 34 1 4.6811 0.6028 2.0506 35 1 4.4157 0.1299 0.3551 36 1 8.0524 0.6685 0.5695 37 1 4.5407 3.5052 2.5770 38 1 3.2057 4.1211 3.5798 39 1 5.7243 2.7571 4.6355 40 1 5.4142 4.5100 4.6592 41 1 4.8634 3.3771 6.8425 42 1 3.4587 4.1862 6.1015 43 1 4.6556 -0.5151 8.7870 44 1 4.9247 0.6744 10.0839 45 1 3.2717 0.3300 9.5213 46 1 5.9716 2.3763 6.9123 47 1 6.4919 2.0407 8.5810 48 1 6.2787 0.7009 7.4288 49 1 2.9729 2.7197 9.2190 50 1 4.6604 3.1864 9.5396 51 1 3.8976 3.6152 7.9896 52 1 1.7260 2.4904 4.8363 53 1 2.2044 0.7745 4.9008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292453131.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:22 Heat of formation + Delta-G solvation = -47.633840 kcal Electronic energy + Delta-G solvation = -31593.293567 eV Core-core repulsion = 27658.721802 eV Total energy + Delta-G solvation = -3934.571765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76977 -39.32844 -36.98340 -35.91067 -35.37542 -33.64100 -32.50303 -32.05966 -30.96311 -27.55421 -27.50271 -27.34378 -26.01608 -25.61685 -23.51488 -22.84402 -22.16778 -20.60200 -19.46487 -18.63952 -18.18079 -16.72205 -16.55940 -16.38398 -15.93932 -15.63406 -15.05449 -14.68412 -14.54626 -14.50111 -14.13026 -13.93746 -13.89431 -13.56846 -13.23022 -13.11996 -12.62552 -12.55776 -12.45606 -12.37839 -12.21218 -12.16103 -11.93673 -11.74458 -11.70366 -11.31486 -11.26500 -11.08434 -11.06555 -11.00392 -10.84771 -10.74890 -10.61365 -10.30202 -10.23863 -10.09535 -9.75319 -9.45781 -9.23609 -8.85907 -8.56504 -8.39627 -7.76907 -6.23012 -4.30342 2.59012 2.76307 3.08230 3.18010 3.24679 3.25482 3.37865 4.05828 4.28150 4.36197 4.64590 4.76069 4.87697 5.02597 5.09292 5.13850 5.23581 5.29354 5.37205 5.38927 5.40718 5.47582 5.48634 5.56848 5.59124 5.67647 5.71988 5.75787 5.83482 5.84365 5.95028 5.99485 6.01980 6.06437 6.14350 6.18640 6.20081 6.25436 6.30382 6.35852 6.57670 6.66396 6.74639 6.79169 6.96751 7.15976 7.17963 7.48880 7.56088 7.70359 8.00044 8.31455 8.32058 8.73556 8.98570 9.36693 10.83532 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.004451 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.252540 B = 6288.957020 C = 8169.267554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C 0.147 3.853 4 N -0.589 5.589 5 C 0.235 3.765 6 C -0.535 4.535 7 H 0.062 0.938 8 C 0.068 3.932 9 N -0.889 5.889 10 Si 0.893 3.107 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.525 3.475 15 O -0.571 6.571 16 C -0.114 4.114 17 H 0.103 0.897 18 C -0.109 4.109 19 C -0.133 4.133 20 C 0.084 3.916 21 N -0.604 5.604 22 C 0.524 3.476 23 O -0.543 6.543 24 C -0.085 4.085 25 C -0.125 4.125 26 C -0.155 4.155 27 C -0.161 4.161 28 C 0.129 3.871 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.035 0.965 36 H 0.266 0.734 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.060 0.940 50 H 0.066 0.934 51 H 0.078 0.922 52 H 0.077 0.923 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.754 4.774 11.705 12.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.181 4.181 3 C 0.024 3.976 4 N -0.318 5.318 5 C 0.116 3.884 6 C -0.573 4.573 7 H 0.080 0.920 8 C -0.136 4.136 9 N -0.527 5.527 10 Si 0.720 3.280 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.312 3.688 15 O -0.452 6.452 16 C -0.135 4.135 17 H 0.121 0.879 18 C -0.147 4.147 19 C -0.171 4.171 20 C -0.038 4.038 21 N -0.337 5.337 22 C 0.312 3.688 23 O -0.419 6.419 24 C -0.088 4.088 25 C -0.183 4.183 26 C -0.212 4.212 27 C -0.218 4.218 28 C 0.006 3.994 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.096 0.904 52 H 0.095 0.905 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.447 4.226 11.704 12.912 hybrid contribution 0.862 0.628 -0.547 1.199 sum -2.585 4.853 11.157 12.439 Atomic orbital electron populations 1.23705 0.95867 1.01287 1.01273 1.23374 0.96165 0.99319 0.99195 1.20340 0.93324 0.94581 0.89362 1.48198 1.13226 1.62264 1.08159 1.19512 0.74586 0.95898 0.98437 1.21387 0.92268 0.97077 1.46614 0.92019 1.24918 0.97782 0.95842 0.95043 1.69918 1.11862 1.22869 1.48020 0.86635 0.79282 0.82532 0.79502 1.20003 1.21186 1.20149 1.20256 0.87760 0.76467 0.84287 1.90590 1.17301 1.52871 1.84400 1.21553 0.98592 1.00984 0.92402 0.87906 1.21484 0.98548 0.94033 1.00608 1.21929 0.98583 1.02733 0.93869 1.22467 0.96200 0.85353 0.99818 1.48028 1.46048 1.18195 1.21410 1.20555 0.81037 0.83619 0.83627 1.90673 1.48800 1.22881 1.79590 1.20750 0.96041 0.97953 0.94104 1.21650 1.02262 0.97469 0.96914 1.22179 0.93211 1.03460 1.02356 1.22339 1.01850 0.95806 1.01841 1.21432 0.91568 1.03193 0.83170 0.89086 0.88745 0.87678 0.89578 0.90968 0.94181 0.94739 0.92437 0.88218 0.92354 0.90760 0.90554 0.87593 0.91386 0.91781 0.92200 0.92214 0.90682 0.91393 0.91696 0.92134 0.91477 0.90378 0.90518 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 14.31 29.02 0.42 -2.40 16 2 C -0.16 -2.75 9.81 -36.03 -0.35 -3.10 16 3 C 0.15 2.74 5.79 -5.20 -0.03 2.71 16 4 N -0.59 -12.23 2.45 -176.43 -0.43 -12.66 16 5 C 0.24 5.41 4.97 -5.19 -0.03 5.39 16 6 C -0.53 -13.00 7.78 -34.44 -0.27 -13.26 16 7 H 0.06 1.51 7.53 -52.49 -0.40 1.11 16 8 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -23.61 13.29 55.43 0.74 -22.88 16 10 Si 0.89 19.52 29.54 -169.99 -5.02 14.50 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 14 C 0.52 10.80 6.71 -10.98 -0.07 10.73 16 15 O -0.57 -12.62 15.74 5.56 0.09 -12.54 16 16 C -0.11 -2.08 2.11 -91.65 -0.19 -2.27 16 17 H 0.10 2.08 5.83 -51.93 -0.30 1.78 16 18 C -0.11 -1.80 5.15 -26.69 -0.14 -1.93 16 19 C -0.13 -1.77 5.89 -26.61 -0.16 -1.93 16 20 C 0.08 0.97 3.84 -3.71 -0.01 0.95 16 21 N -0.60 -8.87 2.97 -172.77 -0.51 -9.38 16 22 C 0.52 8.04 6.49 -10.99 -0.07 7.97 16 23 O -0.54 -10.43 15.40 5.56 0.09 -10.34 16 24 C -0.09 -0.96 0.75 -155.66 -0.12 -1.07 16 25 C -0.13 -1.37 7.77 37.16 0.29 -1.08 16 26 C -0.16 -1.55 8.12 37.15 0.30 -1.25 16 27 C -0.16 -1.41 8.08 37.16 0.30 -1.11 16 28 C 0.13 2.22 5.39 -3.71 -0.02 2.20 16 29 H 0.09 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.09 1.42 7.85 -52.49 -0.41 1.01 16 31 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 32 H 0.09 1.57 8.04 -51.93 -0.42 1.15 16 33 H 0.07 1.34 7.28 -51.93 -0.38 0.96 16 34 H 0.04 0.97 5.75 -51.93 -0.30 0.67 16 35 H 0.03 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.10 1.90 6.10 -51.93 -0.32 1.58 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.09 7.97 -51.93 -0.41 0.68 16 40 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 41 H 0.11 0.99 2.78 -51.93 -0.14 0.85 16 42 H 0.07 0.70 7.97 -51.93 -0.41 0.29 16 43 H 0.06 0.78 8.03 -51.93 -0.42 0.36 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.75 4.77 -51.93 -0.25 0.50 16 47 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 50 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 51 H 0.08 0.65 4.31 -51.93 -0.22 0.43 16 52 H 0.08 1.32 7.68 -51.93 -0.40 0.92 16 53 H 0.09 1.72 7.00 -51.93 -0.36 1.35 16 LS Contribution 405.54 15.07 6.11 6.11 Total: -1.00 -29.41 405.54 -8.12 -37.53 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -8.92 Total: 7.54 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.25 Total: 2.12 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.21 Total: -44.92 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.17 Total: -22.88 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.41 -8.12 -37.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292453131.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.102 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds