Wall clock time and date at job start Tue Mar 31 2020 20:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00001 * 2 1 4 4 N 1.46496 * 109.47578 * 121.57964 * 3 2 1 5 5 C 1.46505 * 119.99986 * 94.28120 * 4 3 2 6 6 C 1.50704 * 109.46700 * 86.86322 * 5 4 3 7 7 H 1.08000 * 120.00134 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99844 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99810 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00029 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47258 * 59.99944 * 10 8 6 12 12 H 1.48502 * 109.47329 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47182 * 299.99975 * 10 8 6 14 14 C 1.34783 * 120.00242 * 274.29103 * 4 3 2 15 15 O 1.21281 * 120.00024 * 4.61250 * 14 4 3 16 16 C 1.50696 * 120.00085 * 184.61420 * 14 4 3 17 17 H 1.08997 * 109.49852 * 328.00107 * 16 14 4 18 18 C 1.53045 * 109.49962 * 88.06426 * 16 14 4 19 19 C 1.53035 * 109.53848 * 181.31775 * 18 16 14 20 20 C 1.53196 * 109.31371 * 298.63250 * 19 18 16 21 21 N 1.46927 * 108.77157 * 54.63707 * 20 19 18 22 22 C 1.34776 * 120.63101 * 126.41684 * 21 20 19 23 23 O 1.21279 * 120.00086 * 183.41944 * 22 21 20 24 24 C 1.50700 * 119.99647 * 3.41070 * 22 21 20 25 25 C 1.53005 * 109.47199 * 174.00273 * 24 22 21 26 26 C 1.52991 * 109.47629 * 294.00387 * 24 22 21 27 27 C 1.53003 * 109.46980 * 54.00743 * 24 22 21 28 28 C 1.46926 * 118.74232 * 306.38874 * 21 20 19 29 29 H 1.07999 * 119.99412 * 185.06984 * 1 2 3 30 30 H 1.07994 * 120.00096 * 5.06911 * 1 2 3 31 31 H 1.08006 * 120.00513 * 179.72133 * 2 1 3 32 32 H 1.09000 * 109.47490 * 241.58104 * 3 2 1 33 33 H 1.09001 * 109.47361 * 1.58086 * 3 2 1 34 34 H 1.09003 * 109.47203 * 206.85966 * 5 4 3 35 35 H 1.08998 * 109.47204 * 326.86781 * 5 4 3 36 36 H 0.97008 * 119.99541 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.45780 * 301.34058 * 18 16 14 38 38 H 1.08994 * 109.45934 * 61.29370 * 18 16 14 39 39 H 1.08993 * 109.50161 * 58.58437 * 19 18 16 40 40 H 1.09007 * 109.49460 * 178.65571 * 19 18 16 41 41 H 1.08993 * 109.58888 * 174.42628 * 20 19 18 42 42 H 1.09001 * 109.58913 * 294.85227 * 20 19 18 43 43 H 1.09004 * 109.46473 * 59.99982 * 25 24 22 44 44 H 1.08996 * 109.47733 * 180.02562 * 25 24 22 45 45 H 1.09002 * 109.47186 * 300.00674 * 25 24 22 46 46 H 1.09002 * 109.47297 * 53.04137 * 26 24 22 47 47 H 1.08999 * 109.47636 * 173.03741 * 26 24 22 48 48 H 1.08995 * 109.47577 * 293.04516 * 26 24 22 49 49 H 1.09000 * 109.46951 * 68.79901 * 27 24 22 50 50 H 1.09000 * 109.46774 * 188.79659 * 27 24 22 51 51 H 1.08995 * 109.47201 * 308.79636 * 27 24 22 52 52 H 1.09000 * 109.58911 * 293.82558 * 28 21 20 53 53 H 1.08993 * 109.58964 * 173.39646 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9341 1.3664 1.1766 5 6 4.3332 0.9438 1.0755 6 6 5.1772 2.1060 0.6192 7 1 4.7175 3.0636 0.4245 8 6 6.5362 1.9466 0.4503 9 7 7.0961 0.7805 0.6879 10 14 7.5825 3.3872 -0.1145 11 1 7.4706 4.4955 0.8676 12 1 9.0007 2.9589 -0.2172 13 1 7.1082 3.8529 -1.4425 14 6 2.4479 1.8115 2.3523 15 8 1.2703 2.0820 2.4581 16 6 3.3674 1.9732 3.5352 17 1 4.1552 1.2213 3.4890 18 6 3.9924 3.3700 3.5093 19 6 4.9515 3.5236 4.6919 20 6 4.1710 3.3673 6.0008 21 7 3.4495 2.0878 5.9713 22 6 3.5922 1.1957 6.9714 23 8 3.0404 0.1177 6.9058 24 6 4.4377 1.5377 8.1711 25 6 4.3136 0.4269 9.2159 26 6 5.9000 1.6736 7.7425 27 6 3.9576 2.8599 8.7731 28 6 2.5690 1.7993 4.8310 29 1 -0.5399 -0.9317 0.0827 30 1 -0.5400 0.9316 -0.0826 31 1 1.8501 -0.9353 0.0045 32 1 2.6687 1.3753 -0.9038 33 1 1.3555 2.1334 0.0284 34 1 4.6811 0.6028 2.0506 35 1 4.4157 0.1299 0.3551 36 1 8.0524 0.6685 0.5695 37 1 4.5407 3.5052 2.5770 38 1 3.2057 4.1211 3.5798 39 1 5.7243 2.7571 4.6355 40 1 5.4142 4.5100 4.6592 41 1 4.8634 3.3771 6.8425 42 1 3.4587 4.1862 6.1015 43 1 4.6556 -0.5151 8.7870 44 1 4.9247 0.6744 10.0839 45 1 3.2717 0.3300 9.5213 46 1 5.9716 2.3763 6.9123 47 1 6.4919 2.0407 8.5810 48 1 6.2787 0.7009 7.4288 49 1 2.9729 2.7197 9.2190 50 1 4.6604 3.1864 9.5396 51 1 3.8976 3.6152 7.9896 52 1 1.7260 2.4904 4.8363 53 1 2.2044 0.7745 4.9008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292453131.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:21 Heat of formation + Delta-G solvation = -63.264420 kcal Electronic energy + Delta-G solvation = -31593.971360 eV Core-core repulsion = 27658.721802 eV Total energy + Delta-G solvation = -3935.249558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.99205 -40.87863 -38.29453 -37.13582 -36.86283 -35.25138 -34.11042 -33.51799 -32.22364 -29.33509 -28.31938 -28.24727 -27.45705 -26.85361 -25.10857 -24.43770 -23.32682 -21.81496 -20.81801 -19.91022 -19.68827 -18.48038 -18.17713 -17.69136 -17.25378 -16.98384 -16.43948 -16.20911 -16.06158 -15.72461 -15.40136 -15.15336 -15.04566 -14.77227 -14.61158 -14.47942 -14.24297 -13.89223 -13.74677 -13.57503 -13.47611 -13.25745 -13.04651 -13.00087 -12.85771 -12.70994 -12.65468 -12.53989 -12.38984 -12.28540 -12.08471 -11.98009 -11.92555 -11.90146 -11.74253 -11.52519 -11.25412 -10.85153 -10.56674 -10.55508 -10.23572 -9.67765 -9.51445 -8.17635 -6.31700 1.23140 1.44920 1.46515 1.53640 1.56909 1.70616 1.90934 2.38888 2.53487 3.13064 3.37073 3.63386 3.78896 3.81506 3.89592 3.94078 3.98664 4.04854 4.08300 4.20500 4.26236 4.28542 4.46527 4.52580 4.62856 4.64866 4.71930 4.72235 4.75847 4.76305 4.80436 4.84547 4.89755 4.93934 4.98195 4.98271 5.04090 5.11936 5.21824 5.23322 5.31660 5.34817 5.38345 5.43140 5.48022 5.63738 5.65414 5.75599 5.84278 6.05254 6.40307 6.55101 6.80508 7.12201 7.26597 7.40975 8.88505 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.004451 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.252540 B = 6288.957020 C = 8169.267554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.186 4.186 3 C 0.145 3.855 4 N -0.593 5.593 5 C 0.253 3.747 6 C -0.533 4.533 7 H 0.060 0.940 8 C 0.025 3.975 9 N -0.923 5.923 10 Si 0.953 3.047 11 H -0.261 1.261 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.520 3.480 15 O -0.586 6.586 16 C -0.106 4.106 17 H 0.077 0.923 18 C -0.105 4.105 19 C -0.128 4.128 20 C 0.083 3.917 21 N -0.604 5.604 22 C 0.512 3.488 23 O -0.593 6.593 24 C -0.081 4.081 25 C -0.124 4.124 26 C -0.154 4.154 27 C -0.158 4.158 28 C 0.140 3.860 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.023 0.977 35 H 0.014 0.986 36 H 0.266 0.734 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.107 0.893 41 H 0.136 0.864 42 H 0.093 0.907 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.048 0.952 46 H 0.076 0.924 47 H 0.101 0.899 48 H 0.044 0.956 49 H 0.055 0.945 50 H 0.097 0.903 51 H 0.085 0.915 52 H 0.079 0.921 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.141 7.513 13.302 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.206 4.206 3 C 0.023 3.977 4 N -0.322 5.322 5 C 0.132 3.868 6 C -0.571 4.571 7 H 0.078 0.922 8 C -0.176 4.176 9 N -0.562 5.562 10 Si 0.779 3.221 11 H -0.185 1.185 12 H -0.213 1.213 13 H -0.200 1.200 14 C 0.308 3.692 15 O -0.469 6.469 16 C -0.128 4.128 17 H 0.095 0.905 18 C -0.143 4.143 19 C -0.166 4.166 20 C -0.037 4.037 21 N -0.335 5.335 22 C 0.302 3.698 23 O -0.473 6.473 24 C -0.084 4.084 25 C -0.182 4.182 26 C -0.211 4.211 27 C -0.214 4.214 28 C 0.016 3.984 29 H 0.132 0.868 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.041 0.959 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.126 0.874 41 H 0.154 0.846 42 H 0.111 0.889 43 H 0.060 0.940 44 H 0.111 0.889 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.120 0.880 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.116 0.884 51 H 0.104 0.896 52 H 0.097 0.903 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.835 6.998 13.297 15.292 hybrid contribution 0.576 -0.289 -1.087 1.264 sum -2.259 6.709 12.211 14.114 Atomic orbital electron populations 1.23940 0.95183 1.02640 0.98118 1.23254 0.96862 0.98338 1.02103 1.20426 0.93126 0.95682 0.88460 1.48215 1.12655 1.62175 1.09130 1.19136 0.75831 0.95096 0.96746 1.21493 0.92546 0.97026 1.46069 0.92178 1.25627 0.98872 0.98042 0.95028 1.70035 1.12105 1.24812 1.49250 0.85673 0.77400 0.79865 0.79206 1.18521 1.21258 1.20033 1.20648 0.87885 0.75931 0.84690 1.90563 1.17878 1.53717 1.84697 1.21481 0.97516 1.01648 0.92109 0.90491 1.21447 0.99126 0.92673 1.01013 1.21929 0.97559 1.03887 0.93242 1.22776 0.96888 0.84248 0.99807 1.48155 1.45630 1.19415 1.20316 1.21542 0.80722 0.82827 0.84666 1.90645 1.50940 1.25030 1.80717 1.20838 0.95905 0.99565 0.92059 1.21663 1.02138 0.96546 0.97849 1.22206 0.92472 1.02651 1.03724 1.22354 1.02420 0.93987 1.02684 1.21123 0.92005 1.01534 0.83764 0.86784 0.88177 0.87992 0.89776 0.90834 0.95897 0.96784 0.92463 0.90858 0.91228 0.92531 0.87431 0.84645 0.88936 0.94015 0.88937 0.93312 0.90554 0.88005 0.93633 0.92572 0.88409 0.89641 0.90275 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.80 14.31 67.78 0.97 -3.83 16 2 C -0.19 -6.45 9.81 25.65 0.25 -6.20 16 3 C 0.15 5.56 5.79 85.63 0.50 6.06 16 4 N -0.59 -25.58 2.45 -830.49 -2.03 -27.62 16 5 C 0.25 12.19 4.97 85.63 0.43 12.61 16 6 C -0.53 -26.44 7.78 25.60 0.20 -26.24 16 7 H 0.06 2.97 7.53 -2.91 -0.02 2.95 16 8 C 0.02 1.24 5.46 84.65 0.46 1.71 16 9 N -0.92 -50.08 13.29 21.45 0.28 -49.80 16 10 Si 0.95 39.71 29.54 68.60 2.03 41.73 16 11 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 12 H -0.29 -11.93 7.11 99.48 0.71 -11.23 16 13 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 14 C 0.52 22.10 6.71 87.65 0.59 22.69 16 15 O -0.59 -26.34 15.74 -3.03 -0.05 -26.39 16 16 C -0.11 -4.01 2.11 -11.46 -0.02 -4.03 16 17 H 0.08 3.33 5.83 -2.39 -0.01 3.31 16 18 C -0.10 -3.41 5.15 30.62 0.16 -3.25 16 19 C -0.13 -3.16 5.89 30.67 0.18 -2.98 16 20 C 0.08 1.69 3.84 86.36 0.33 2.02 16 21 N -0.60 -17.48 2.97 -818.91 -2.43 -19.91 16 22 C 0.51 15.80 6.49 87.66 0.57 16.37 16 23 O -0.59 -23.95 15.40 -3.03 -0.05 -24.00 16 24 C -0.08 -1.66 0.75 -52.93 -0.04 -1.70 16 25 C -0.12 -2.57 7.77 71.98 0.56 -2.01 16 26 C -0.15 -2.69 8.12 71.98 0.58 -2.11 16 27 C -0.16 -2.17 8.08 71.98 0.58 -1.58 16 28 C 0.14 4.94 5.39 86.36 0.47 5.41 16 29 H 0.11 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.10 2.88 7.85 -2.91 -0.02 2.85 16 31 H 0.10 3.56 8.06 -2.91 -0.02 3.53 16 32 H 0.08 3.18 8.04 -2.39 -0.02 3.16 16 33 H 0.07 2.76 7.28 -2.39 -0.02 2.75 16 34 H 0.02 1.19 5.75 -2.39 -0.01 1.18 16 35 H 0.01 0.73 8.10 -2.39 -0.02 0.71 16 36 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 37 H 0.07 2.80 6.10 -2.39 -0.01 2.78 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 1.61 7.97 -2.39 -0.02 1.59 16 40 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.14 2.00 2.78 -2.39 -0.01 2.00 16 42 H 0.09 1.52 7.97 -2.39 -0.02 1.50 16 43 H 0.04 1.03 8.03 -2.39 -0.02 1.01 16 44 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.08 1.31 4.77 -2.39 -0.01 1.30 16 47 H 0.10 1.12 8.10 -2.39 -0.02 1.11 16 48 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 0.85 8.12 -2.39 -0.02 0.83 16 50 H 0.10 0.81 8.09 -2.39 -0.02 0.79 16 51 H 0.09 1.05 4.31 -2.39 -0.01 1.03 16 52 H 0.08 2.75 7.68 -2.39 -0.02 2.73 16 53 H 0.06 2.45 7.00 -2.39 -0.02 2.44 16 Total: -1.00 -66.99 405.54 5.40 -61.59 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.88 Total: 31.44 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 6.76 Total: 12.95 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -4.18 Total: -97.32 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -0.09 Total: -50.39 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.73 kcal Total: -66.99 5.40 -61.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292453131.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.677 kcal (2) G-P(sol) polarization free energy of solvation -66.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds