Wall clock time and date at job start Tue Mar 31 2020 20:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00216 * 2 1 4 4 N 1.46505 * 109.47047 * 125.00161 * 3 2 1 5 5 C 1.46490 * 119.99857 * 94.85107 * 4 3 2 6 6 C 1.50704 * 109.47202 * 85.37188 * 5 4 3 7 7 H 1.08000 * 119.99808 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00035 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99919 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00051 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47086 * 269.99935 * 10 8 6 12 12 H 1.48497 * 109.47094 * 29.99960 * 10 8 6 13 13 H 1.48497 * 109.47505 * 150.00093 * 10 8 6 14 14 C 1.34777 * 119.99949 * 274.85050 * 4 3 2 15 15 O 1.21286 * 120.00071 * 5.08127 * 14 4 3 16 16 C 1.50696 * 120.00054 * 185.07809 * 14 4 3 17 17 H 1.08999 * 109.49188 * 45.10870 * 16 14 4 18 18 C 1.53028 * 109.50006 * 285.04196 * 16 14 4 19 19 C 1.53038 * 109.54183 * 178.68074 * 18 16 14 20 20 C 1.53198 * 109.31116 * 61.36431 * 19 18 16 21 21 N 1.46922 * 108.77545 * 305.36736 * 20 19 18 22 22 C 1.34777 * 120.63318 * 233.60687 * 21 20 19 23 23 O 1.21282 * 120.00147 * 185.74763 * 22 21 20 24 24 C 1.50700 * 119.99854 * 5.75001 * 22 21 20 25 25 C 1.52999 * 109.47016 * 178.02289 * 24 22 21 26 26 C 1.53000 * 109.47059 * 298.02373 * 24 22 21 27 27 C 1.53005 * 109.47224 * 58.01932 * 24 22 21 28 28 C 1.46936 * 118.76735 * 53.58791 * 21 20 19 29 29 H 1.08001 * 120.00047 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.00046 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.00047 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46712 * 5.00629 * 3 2 1 33 33 H 1.08994 * 109.47105 * 245.00375 * 3 2 1 34 34 H 1.09002 * 109.47389 * 325.36580 * 5 4 3 35 35 H 1.09007 * 109.47337 * 205.36882 * 5 4 3 36 36 H 0.96995 * 120.00470 * 359.97438 * 9 8 6 37 37 H 1.08999 * 109.46123 * 298.70177 * 18 16 14 38 38 H 1.08997 * 109.46094 * 58.66219 * 18 16 14 39 39 H 1.08999 * 109.50573 * 181.31404 * 19 18 16 40 40 H 1.08999 * 109.49725 * 301.42105 * 19 18 16 41 41 H 1.09001 * 109.58433 * 65.15631 * 20 19 18 42 42 H 1.09003 * 109.58837 * 185.57982 * 20 19 18 43 43 H 1.08995 * 109.47129 * 60.00131 * 25 24 22 44 44 H 1.09002 * 109.46576 * 179.97438 * 25 24 22 45 45 H 1.08993 * 109.47128 * 299.99789 * 25 24 22 46 46 H 1.09001 * 109.47433 * 64.11324 * 26 24 22 47 47 H 1.09000 * 109.47318 * 184.11170 * 26 24 22 48 48 H 1.09002 * 109.47307 * 304.11600 * 26 24 22 49 49 H 1.09006 * 109.46522 * 68.07562 * 27 24 22 50 50 H 1.08992 * 109.46904 * 188.07214 * 27 24 22 51 51 H 1.08995 * 109.47232 * 308.07688 * 27 24 22 52 52 H 1.08996 * 109.62281 * 186.64442 * 28 21 20 53 53 H 1.08999 * 109.55994 * 66.20981 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 4.3885 0.9253 0.9427 6 6 5.1924 2.1012 0.4506 7 1 4.7122 3.0558 0.2937 8 6 6.5407 1.9583 0.2007 9 7 7.1253 0.7957 0.3913 10 14 7.5370 3.4157 -0.4099 11 1 7.5176 3.4413 -1.8946 12 1 6.9468 4.6734 0.1146 13 1 8.9385 3.2910 0.0647 14 6 2.5666 1.7305 2.3459 15 8 1.3929 1.9787 2.5245 16 6 3.5470 1.8677 3.4820 17 1 4.4400 2.3850 3.1313 18 6 3.9304 0.4785 3.9966 19 6 4.9511 0.6155 5.1286 20 6 4.3241 1.4028 6.2835 21 7 3.8219 2.6827 5.7656 22 6 4.1958 3.8471 6.3322 23 8 3.6951 4.8887 5.9645 24 6 5.2360 3.8546 7.4226 25 6 5.5112 5.2962 7.8549 26 6 4.7250 3.0516 8.6204 27 6 6.5279 3.2236 6.8993 28 6 2.9044 2.6700 4.6180 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4026 -0.9314 34 1 4.4362 0.1201 0.2095 35 1 4.7972 0.5773 1.8915 36 1 6.6079 0.0388 0.7080 37 1 3.0407 -0.0290 4.3694 38 1 4.3657 -0.1025 3.1836 39 1 5.2413 -0.3750 5.4789 40 1 5.8310 1.1449 4.7629 41 1 3.4991 0.8319 6.7095 42 1 5.0766 1.5888 7.0500 43 1 4.5908 5.7457 8.2277 44 1 6.2632 5.3016 8.6439 45 1 5.8752 5.8683 7.0016 46 1 4.5985 2.0083 8.3312 47 1 5.4452 3.1176 9.4360 48 1 3.7674 3.4566 8.9476 49 1 6.9683 3.8723 6.1420 50 1 7.2304 3.0979 7.7231 51 1 6.3054 2.2513 6.4600 52 1 2.7203 3.6915 4.2852 53 1 1.9633 2.2028 4.9082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292453136.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:25 Heat of formation + Delta-G solvation = -47.937465 kcal Electronic energy + Delta-G solvation = -31658.093753 eV Core-core repulsion = 27723.508822 eV Total energy + Delta-G solvation = -3934.584932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.83738 -39.45223 -37.07191 -35.94032 -35.53966 -33.87349 -32.70869 -32.06994 -31.05110 -27.57665 -27.39080 -27.09773 -26.05711 -25.64608 -23.62651 -22.87425 -22.23780 -20.61493 -19.64708 -18.67809 -18.49597 -17.11411 -16.63060 -16.47570 -16.09754 -15.60928 -15.08664 -14.90322 -14.54875 -14.31606 -14.04527 -13.98896 -13.86307 -13.75288 -13.35891 -13.29356 -12.67874 -12.58888 -12.55184 -12.41458 -12.29400 -12.19797 -12.02273 -11.80790 -11.77395 -11.45851 -11.34299 -11.16235 -11.05307 -10.97304 -10.90396 -10.78092 -10.59046 -10.39777 -10.22603 -10.18539 -9.49884 -9.35386 -9.29459 -8.93229 -8.56316 -8.44120 -7.75545 -6.55892 -4.31517 2.51038 2.72971 3.03405 3.27387 3.34626 3.37972 3.53452 3.94676 4.32913 4.38871 4.63017 4.73505 4.75357 4.94268 4.99764 5.11340 5.16800 5.18648 5.26044 5.28283 5.36323 5.38525 5.45153 5.48452 5.55698 5.64314 5.66968 5.69729 5.76130 5.80543 5.84385 5.91508 5.94024 5.97878 6.07916 6.10643 6.12114 6.17987 6.24835 6.25692 6.32164 6.45535 6.55232 6.64705 6.84223 6.86391 7.04845 7.33619 7.51716 7.81047 8.07675 8.29206 8.36290 8.61949 8.86850 9.38741 10.80108 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009273 B = 0.004551 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.813599 B = 6150.990941 C = 7930.987894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C 0.146 3.854 4 N -0.586 5.586 5 C 0.217 3.783 6 C -0.616 4.616 7 H 0.055 0.945 8 C 0.026 3.974 9 N -0.905 5.905 10 Si 1.067 2.933 11 H -0.286 1.286 12 H -0.287 1.287 13 H -0.283 1.283 14 C 0.525 3.475 15 O -0.567 6.567 16 C -0.118 4.118 17 H 0.112 0.888 18 C -0.112 4.112 19 C -0.136 4.136 20 C 0.082 3.918 21 N -0.606 5.606 22 C 0.524 3.476 23 O -0.540 6.540 24 C -0.086 4.086 25 C -0.126 4.126 26 C -0.156 4.156 27 C -0.160 4.160 28 C 0.134 3.866 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.023 0.977 35 H 0.043 0.957 36 H 0.268 0.732 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.067 0.933 51 H 0.077 0.923 52 H 0.092 0.908 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.715 -1.911 13.212 13.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C 0.024 3.976 4 N -0.315 5.315 5 C 0.097 3.903 6 C -0.655 4.655 7 H 0.073 0.927 8 C -0.179 4.179 9 N -0.540 5.540 10 Si 0.895 3.105 11 H -0.213 1.213 12 H -0.213 1.213 13 H -0.208 1.208 14 C 0.313 3.687 15 O -0.448 6.448 16 C -0.139 4.139 17 H 0.130 0.870 18 C -0.150 4.150 19 C -0.174 4.174 20 C -0.040 4.040 21 N -0.339 5.339 22 C 0.312 3.688 23 O -0.417 6.417 24 C -0.089 4.089 25 C -0.183 4.183 26 C -0.213 4.213 27 C -0.217 4.217 28 C 0.012 3.988 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.041 0.959 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.128 0.872 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.086 0.914 51 H 0.095 0.905 52 H 0.111 0.889 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.044 -0.743 12.634 12.820 hybrid contribution -1.421 -0.665 0.140 1.575 sum -3.465 -1.408 12.774 13.311 Atomic orbital electron populations 1.23719 0.95825 1.01337 1.01293 1.23350 0.96155 0.99156 0.99241 1.20394 0.92220 0.94715 0.90320 1.47984 1.12081 1.63884 1.07566 1.19777 0.76477 0.96331 0.97731 1.22343 0.96093 0.97401 1.49655 0.92661 1.25757 0.95488 1.01918 0.94716 1.70816 1.39553 1.01255 1.42374 0.83549 0.75959 0.74357 0.76640 1.21268 1.21320 1.20808 1.20235 0.88277 0.76340 0.83852 1.90605 1.18184 1.52399 1.83582 1.21568 1.00177 0.98349 0.93853 0.87006 1.21607 0.99055 0.95553 0.98771 1.21968 0.99215 1.00586 0.95604 1.22491 0.99627 0.84549 0.97342 1.48021 1.47496 1.05987 1.32364 1.20568 0.82358 0.82984 0.82853 1.90681 1.55777 1.31631 1.63564 1.20766 0.94937 0.98722 0.94461 1.21646 1.01828 0.93415 1.01438 1.22257 1.01823 1.00446 0.96747 1.22246 0.95425 1.02041 1.01944 1.21346 0.91230 1.02045 0.84190 0.88615 0.89028 0.87800 0.90847 0.89437 0.95923 0.93949 0.92213 0.91894 0.89825 0.90387 0.90513 0.91409 0.87187 0.92052 0.92153 0.91865 0.90712 0.91380 0.92093 0.91626 0.91399 0.90487 0.88946 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 14.32 29.02 0.42 -2.31 16 2 C -0.16 -2.65 9.81 -36.02 -0.35 -3.00 16 3 C 0.15 2.76 5.78 -5.19 -0.03 2.73 16 4 N -0.59 -12.18 2.45 -176.43 -0.43 -12.61 16 5 C 0.22 4.90 4.02 -5.20 -0.02 4.88 16 6 C -0.62 -15.82 9.07 -34.44 -0.31 -16.13 16 7 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 8 C 0.03 0.69 5.46 -17.82 -0.10 0.60 16 9 N -0.90 -24.76 13.65 55.43 0.76 -24.00 16 10 Si 1.07 23.98 29.90 -169.99 -5.08 18.90 16 11 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 C 0.53 10.84 6.86 -10.99 -0.08 10.77 16 15 O -0.57 -12.63 15.60 5.55 0.09 -12.54 16 16 C -0.12 -2.13 1.84 -91.66 -0.17 -2.30 16 17 H 0.11 2.33 7.36 -51.93 -0.38 1.94 16 18 C -0.11 -1.70 4.83 -26.70 -0.13 -1.83 16 19 C -0.14 -1.65 5.74 -26.61 -0.15 -1.81 16 20 C 0.08 0.91 4.25 -3.71 -0.02 0.89 16 21 N -0.61 -8.86 2.96 -172.75 -0.51 -9.37 16 22 C 0.52 8.13 6.48 -10.99 -0.07 8.06 16 23 O -0.54 -10.53 15.42 5.56 0.09 -10.44 16 24 C -0.09 -0.97 0.75 -155.66 -0.12 -1.09 16 25 C -0.13 -1.40 7.76 37.16 0.29 -1.12 16 26 C -0.16 -1.35 8.11 37.16 0.30 -1.04 16 27 C -0.16 -1.64 8.10 37.16 0.30 -1.34 16 28 C 0.13 2.33 5.21 -3.70 -0.02 2.31 16 29 H 0.10 1.42 7.84 -52.49 -0.41 1.00 16 30 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.07 1.40 7.30 -51.93 -0.38 1.02 16 33 H 0.09 1.64 8.03 -51.93 -0.42 1.23 16 34 H 0.02 0.54 7.97 -51.93 -0.41 0.12 16 35 H 0.04 0.94 3.96 -51.92 -0.21 0.74 16 36 H 0.27 7.16 7.22 -40.82 -0.29 6.86 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 1.39 5.52 -51.93 -0.29 1.10 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.05 7.45 -51.93 -0.39 0.67 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.11 0.98 2.51 -51.93 -0.13 0.85 16 43 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 46 H 0.07 0.57 4.72 -51.93 -0.25 0.33 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 50 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 51 H 0.08 0.78 3.88 -51.93 -0.20 0.58 16 52 H 0.09 1.83 7.04 -51.93 -0.37 1.47 16 53 H 0.07 1.28 7.76 -51.93 -0.40 0.88 16 LS Contribution 403.53 15.07 6.08 6.08 Total: -1.00 -31.01 403.53 -8.07 -39.08 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -8.80 Total: 6.65 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -0.26 Total: -1.74 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.19 Total: -45.98 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.17 Total: -22.98 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.08 Total: 18.90 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.01 -8.07 -39.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292453136.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.856 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds