Wall clock time and date at job start Tue Mar 31 2020 19:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50706 * 119.99838 * 2 1 4 4 N 1.46495 * 109.47412 * 124.30584 * 3 2 1 5 5 C 1.46508 * 119.99861 * 274.48939 * 4 3 2 6 6 C 1.50696 * 109.46789 * 274.28463 * 5 4 3 7 7 H 1.08000 * 120.00288 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99904 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99980 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00266 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46965 * 89.99971 * 10 8 6 12 12 H 1.48497 * 109.47446 * 210.00161 * 10 8 6 13 13 H 1.48503 * 109.46893 * 330.00079 * 10 8 6 14 14 C 1.34776 * 120.00433 * 94.48335 * 4 3 2 15 15 O 1.21282 * 119.99744 * 3.92709 * 14 4 3 16 16 C 1.50697 * 120.00425 * 183.92498 * 14 4 3 17 17 H 1.09003 * 109.47096 * 42.11621 * 16 14 4 18 18 C 1.53004 * 109.46969 * 282.12086 * 16 14 4 19 19 C 1.53005 * 109.47065 * 174.26991 * 18 16 14 20 20 C 1.52997 * 109.47081 * 174.99842 * 19 18 16 21 21 C 1.52993 * 109.47216 * 295.00139 * 19 18 16 22 22 N 1.46492 * 109.47304 * 162.12279 * 16 14 4 23 23 C 1.45757 * 117.94649 * 240.00191 * 22 16 14 24 24 C 1.52922 * 110.48883 * 160.92295 * 23 22 16 25 25 C 1.53343 * 108.67508 * 50.75371 * 24 23 22 26 26 C 1.53061 * 108.43400 * 292.48247 * 25 24 23 27 27 C 1.33357 * 117.95064 * 60.01978 * 22 16 14 28 28 O 1.21280 * 118.24097 * 2.24892 * 27 22 16 29 29 H 1.08002 * 119.99512 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.99528 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00120 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47320 * 4.30177 * 3 2 1 33 33 H 1.09002 * 109.46641 * 244.30456 * 3 2 1 34 34 H 1.08997 * 109.47000 * 34.28571 * 5 4 3 35 35 H 1.08997 * 109.46949 * 154.28248 * 5 4 3 36 36 H 0.96993 * 119.99504 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.47414 * 294.27238 * 18 16 14 38 38 H 1.08996 * 109.46914 * 54.27559 * 18 16 14 39 39 H 1.09003 * 109.46596 * 55.00422 * 19 18 16 40 40 H 1.09007 * 109.46735 * 60.00328 * 20 19 18 41 41 H 1.08993 * 109.47201 * 180.02562 * 20 19 18 42 42 H 1.08999 * 109.47542 * 300.00409 * 20 19 18 43 43 H 1.09002 * 109.47200 * 179.97438 * 21 19 18 44 44 H 1.09003 * 109.47569 * 299.99687 * 21 19 18 45 45 H 1.09003 * 109.47291 * 59.99985 * 21 19 18 46 46 H 1.08999 * 109.29897 * 40.60776 * 23 22 16 47 47 H 1.09003 * 109.30046 * 281.23500 * 23 22 16 48 48 H 1.09009 * 109.60140 * 170.50655 * 24 23 22 49 49 H 1.08992 * 109.60273 * 290.99188 * 24 23 22 50 50 H 1.09001 * 109.67543 * 52.19943 * 25 24 23 51 51 H 1.08996 * 109.67604 * 172.73171 * 25 24 23 52 52 H 1.08992 * 109.40085 * 288.75626 * 26 25 24 53 53 H 1.08999 * 109.32814 * 168.97046 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9819 1.3389 1.1409 5 6 2.5055 1.7878 2.4516 6 6 2.6021 3.2894 2.5338 7 1 2.9808 3.8530 1.6940 8 6 2.2069 3.9438 3.6813 9 7 1.7462 3.2575 4.7042 10 14 2.3272 5.8052 3.7836 11 1 1.0605 6.4104 3.2996 12 1 2.5621 6.2094 5.1931 13 1 3.4548 6.2754 2.9394 14 6 4.2649 0.9570 0.9848 15 8 4.6778 0.6534 -0.1144 16 6 5.1866 0.9072 2.1761 17 1 4.6586 0.4748 3.0261 18 6 5.6436 2.3246 2.5269 19 6 6.4624 2.2913 3.8190 20 6 7.0236 3.6860 4.1031 21 6 5.5659 1.8561 4.9798 22 7 6.3545 0.0829 1.8558 23 6 6.6005 -1.0995 2.6719 24 6 7.5304 -2.0696 1.9420 25 6 8.7638 -1.2974 1.4583 26 6 8.3237 -0.3153 0.3698 27 6 7.1261 0.4614 0.8362 28 8 6.8458 1.4882 0.2547 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3578 2.1322 0.0771 33 1 2.6311 1.3970 -0.9261 34 1 1.4677 1.4826 2.5851 35 1 3.1191 1.3408 3.2338 36 1 1.4685 3.7179 5.5115 37 1 6.2578 2.7191 1.7176 38 1 4.7715 2.9635 2.6659 39 1 7.2846 1.5841 3.7099 40 1 6.2014 4.3932 4.2122 41 1 7.6073 3.6622 5.0233 42 1 7.6623 3.9961 3.2761 43 1 6.1493 1.8319 5.9002 44 1 4.7436 2.5633 5.0890 45 1 5.1660 0.8624 4.7774 46 1 5.6532 -1.5967 2.8806 47 1 7.0608 -0.7983 3.6129 48 1 7.8394 -2.8625 2.6233 49 1 7.0104 -2.5011 1.0868 50 1 9.2032 -0.7486 2.2913 51 1 9.4960 -1.9939 1.0500 52 1 8.0675 -0.8677 -0.5341 53 1 9.1403 0.3736 0.1539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293664813.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:16 Heat of formation + Delta-G solvation = -72.842103 kcal Electronic energy + Delta-G solvation = -32676.353397 eV Core-core repulsion = 28740.688519 eV Total energy + Delta-G solvation = -3935.664878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.11630 -40.14253 -37.65751 -37.17993 -37.04680 -35.10910 -34.50396 -33.84142 -30.86044 -30.14446 -29.31306 -27.98712 -27.30660 -25.42753 -25.04788 -24.64684 -23.17715 -21.14040 -20.81969 -20.09871 -19.18125 -18.48218 -18.28656 -17.76172 -17.11495 -16.76468 -16.55494 -16.19891 -16.00971 -15.64127 -15.42331 -15.03102 -14.86659 -14.71955 -14.49941 -14.33670 -14.19582 -14.09111 -13.94156 -13.69703 -13.28933 -13.07861 -12.94632 -12.86438 -12.77406 -12.72462 -12.57757 -12.49133 -12.27785 -12.13244 -12.02905 -11.81086 -11.79241 -11.66906 -11.59134 -11.50691 -11.39395 -10.76517 -10.55924 -10.32628 -10.21452 -9.52428 -9.37743 -8.16867 -6.26267 1.25233 1.37323 1.41808 1.49744 1.76177 1.86977 2.10023 2.40336 2.63665 3.12846 3.62227 3.76832 3.89055 3.93701 3.98733 4.00843 4.07452 4.09602 4.14895 4.20978 4.24709 4.50227 4.54318 4.60043 4.62201 4.69214 4.78540 4.82017 4.88391 4.90273 4.93645 4.94698 4.98134 5.01061 5.07336 5.09431 5.14660 5.17908 5.23418 5.26633 5.38531 5.40129 5.53490 5.56879 5.63554 5.66307 5.74830 5.76581 5.94894 6.10123 6.59653 6.70495 6.83758 7.32234 7.42880 7.53736 8.87962 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009937 B = 0.005618 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.998628 B = 4983.014190 C = 6695.929240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.177 4.177 3 C 0.143 3.857 4 N -0.599 5.599 5 C 0.257 3.743 6 C -0.534 4.534 7 H 0.040 0.960 8 C 0.043 3.957 9 N -0.903 5.903 10 Si 0.932 3.068 11 H -0.277 1.277 12 H -0.275 1.275 13 H -0.280 1.280 14 C 0.501 3.499 15 O -0.574 6.574 16 C 0.147 3.853 17 H 0.111 0.889 18 C -0.136 4.136 19 C -0.076 4.076 20 C -0.140 4.140 21 C -0.137 4.137 22 N -0.589 5.589 23 C 0.101 3.899 24 C -0.128 4.128 25 C -0.112 4.112 26 C -0.127 4.127 27 C 0.508 3.492 28 O -0.580 6.580 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.019 0.981 35 H 0.037 0.963 36 H 0.268 0.732 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.039 0.961 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.116 0.884 49 H 0.061 0.939 50 H 0.077 0.923 51 H 0.101 0.899 52 H 0.094 0.906 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.275 -11.780 1.003 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.196 4.196 3 C 0.020 3.980 4 N -0.330 5.330 5 C 0.136 3.864 6 C -0.572 4.572 7 H 0.058 0.942 8 C -0.159 4.159 9 N -0.541 5.541 10 Si 0.759 3.241 11 H -0.202 1.202 12 H -0.200 1.200 13 H -0.205 1.205 14 C 0.289 3.711 15 O -0.455 6.455 16 C 0.040 3.960 17 H 0.128 0.872 18 C -0.174 4.174 19 C -0.094 4.094 20 C -0.198 4.198 21 C -0.194 4.194 22 N -0.322 5.322 23 C -0.020 4.020 24 C -0.165 4.165 25 C -0.150 4.150 26 C -0.167 4.167 27 C 0.298 3.702 28 O -0.459 6.459 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.135 0.865 49 H 0.080 0.920 50 H 0.096 0.904 51 H 0.119 0.881 52 H 0.113 0.887 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.296 -11.408 0.333 15.370 hybrid contribution -0.615 1.460 -0.186 1.596 sum 9.681 -9.947 0.147 13.881 Atomic orbital electron populations 1.24017 0.94893 1.03057 0.98138 1.23125 0.96726 0.97638 1.02126 1.20392 0.92109 0.96145 0.89367 1.48211 1.08970 1.63595 1.12203 1.19116 0.94856 0.93768 0.78646 1.21383 1.43295 0.92585 0.99986 0.94170 1.25292 0.94427 1.01020 0.95165 1.69961 1.42669 1.36688 1.04811 0.85953 0.78355 0.82268 0.77569 1.20245 1.20044 1.20482 1.21244 0.82619 0.76341 0.90937 1.90573 1.75592 1.51380 1.27910 1.20841 0.86227 0.94530 0.94390 0.87155 1.22178 1.02392 0.94804 0.98027 1.20917 0.97343 0.97509 0.93679 1.21761 1.00178 0.96306 1.01532 1.21781 0.99159 1.00884 0.97566 1.47253 1.25254 1.27021 1.32689 1.21791 1.01061 0.84790 0.94392 1.21883 0.95480 0.97857 1.01288 1.21648 0.98086 0.97642 0.97613 1.21656 0.94557 0.99402 1.01079 1.20742 0.84882 0.85767 0.78824 1.90661 1.72520 1.27628 1.55118 0.88068 0.86040 0.88221 0.90559 0.91725 0.96296 0.94512 0.92299 0.92627 0.89230 0.90868 0.94402 0.90681 0.93549 0.91297 0.94197 0.92945 0.90864 0.89711 0.86541 0.92027 0.90406 0.88056 0.88738 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 14.32 67.77 0.97 -3.70 16 2 C -0.18 -6.09 9.85 25.64 0.25 -5.84 16 3 C 0.14 5.86 5.94 85.64 0.51 6.37 16 4 N -0.60 -27.05 2.44 -830.50 -2.03 -29.07 16 5 C 0.26 12.26 4.75 85.63 0.41 12.67 16 6 C -0.53 -27.71 6.80 25.60 0.17 -27.54 16 7 H 0.04 2.24 7.81 -2.91 -0.02 2.21 16 8 C 0.04 2.20 5.46 84.65 0.46 2.66 16 9 N -0.90 -47.23 13.29 21.45 0.28 -46.95 16 10 Si 0.93 42.00 29.54 68.60 2.03 44.02 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 14 C 0.50 22.94 6.56 87.66 0.58 23.51 16 15 O -0.57 -29.14 13.19 19.58 0.26 -28.88 16 16 C 0.15 5.72 1.45 44.25 0.06 5.78 16 17 H 0.11 4.10 4.38 -2.39 -0.01 4.09 16 18 C -0.14 -5.59 3.83 30.60 0.12 -5.47 16 19 C -0.08 -2.49 2.87 -10.80 -0.03 -2.52 16 20 C -0.14 -4.42 9.19 71.98 0.66 -3.75 16 21 C -0.14 -4.36 8.96 71.98 0.64 -3.72 16 22 N -0.59 -18.95 2.12 -806.81 -1.71 -20.66 16 23 C 0.10 2.17 6.25 86.49 0.54 2.71 16 24 C -0.13 -1.95 6.02 30.68 0.18 -1.77 16 25 C -0.11 -1.69 6.03 30.73 0.19 -1.51 16 26 C -0.13 -3.07 6.03 29.70 0.18 -2.89 16 27 C 0.51 18.06 6.15 87.71 0.54 18.60 16 28 O -0.58 -27.10 12.27 19.58 0.24 -26.86 16 29 H 0.10 2.84 7.84 -2.91 -0.02 2.82 16 30 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 31 H 0.10 3.43 8.06 -2.91 -0.02 3.40 16 32 H 0.08 3.12 7.75 -2.39 -0.02 3.10 16 33 H 0.06 2.82 7.25 -2.39 -0.02 2.80 16 34 H 0.02 0.96 8.10 -2.39 -0.02 0.94 16 35 H 0.04 1.77 5.77 -2.39 -0.01 1.76 16 36 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 37 H 0.06 2.60 5.71 -2.39 -0.01 2.59 16 38 H 0.09 4.29 4.69 -2.39 -0.01 4.28 16 39 H 0.07 2.14 7.63 -2.39 -0.02 2.12 16 40 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.05 1.59 6.45 -2.39 -0.02 1.58 16 46 H 0.07 1.54 8.03 -2.39 -0.02 1.52 16 47 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 48 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 49 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 50 H 0.08 1.09 8.13 -2.39 -0.02 1.07 16 51 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 53 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -69.59 408.12 6.37 -63.22 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.87 Total: 31.57 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 6.44 Total: 13.61 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -3.45 Total: -96.68 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: 0.50 Total: -55.74 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -69.59 6.37 -63.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293664813.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.626 kcal (2) G-P(sol) polarization free energy of solvation -69.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds