Wall clock time and date at job start Tue Mar 31 2020 19:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50692 * 120.00024 * 2 1 4 4 N 1.46502 * 109.47231 * 124.99996 * 3 2 1 5 5 C 1.46503 * 119.99807 * 274.66166 * 4 3 2 6 6 C 1.50700 * 109.47321 * 273.83556 * 5 4 3 7 7 H 1.08001 * 119.99498 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99839 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99990 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99941 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47046 * 90.00471 * 10 8 6 12 12 H 1.48500 * 109.47216 * 210.00848 * 10 8 6 13 13 H 1.48499 * 109.47054 * 330.00541 * 10 8 6 14 14 C 1.34769 * 119.99990 * 94.66153 * 4 3 2 15 15 O 1.21282 * 120.00485 * 4.64484 * 14 4 3 16 16 C 1.50697 * 120.00052 * 184.64587 * 14 4 3 17 17 H 1.09003 * 109.47335 * 313.52871 * 16 14 4 18 18 C 1.53000 * 109.47175 * 73.53294 * 16 14 4 19 19 C 1.53007 * 109.47189 * 187.28674 * 18 16 14 20 20 C 1.53004 * 109.46851 * 171.73919 * 19 18 16 21 21 C 1.52999 * 109.47073 * 291.73698 * 19 18 16 22 22 N 1.46501 * 109.47262 * 193.52995 * 16 14 4 23 23 C 1.45750 * 117.94488 * 114.25773 * 22 16 14 24 24 C 1.53108 * 110.38792 * 160.74493 * 23 22 16 25 25 C 1.53345 * 108.52530 * 51.11212 * 24 23 22 26 26 C 1.53069 * 108.42813 * 292.31167 * 25 24 23 27 27 C 1.33347 * 117.94751 * 294.51696 * 22 16 14 28 28 O 1.21281 * 118.24970 * 2.20233 * 27 22 16 29 29 H 1.08004 * 119.99851 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00728 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.99558 * 180.02562 * 2 1 3 32 32 H 1.09007 * 109.47213 * 4.99739 * 3 2 1 33 33 H 1.09004 * 109.47114 * 244.99954 * 3 2 1 34 34 H 1.09006 * 109.47100 * 33.84122 * 5 4 3 35 35 H 1.09006 * 109.46813 * 153.83401 * 5 4 3 36 36 H 0.97007 * 119.99974 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.46798 * 307.28621 * 18 16 14 38 38 H 1.08999 * 109.47558 * 67.28524 * 18 16 14 39 39 H 1.09005 * 109.46789 * 51.74009 * 19 18 16 40 40 H 1.08994 * 109.47199 * 59.99977 * 20 19 18 41 41 H 1.09001 * 109.46543 * 180.02562 * 20 19 18 42 42 H 1.08999 * 109.46835 * 299.99658 * 20 19 18 43 43 H 1.09000 * 109.47112 * 189.27288 * 21 19 18 44 44 H 1.08998 * 109.47287 * 309.27653 * 21 19 18 45 45 H 1.09007 * 109.46931 * 69.27316 * 21 19 18 46 46 H 1.09000 * 109.30351 * 281.23531 * 23 22 16 47 47 H 1.08999 * 109.30667 * 40.61639 * 23 22 16 48 48 H 1.08996 * 109.80518 * 291.32657 * 24 23 22 49 49 H 1.09001 * 109.68028 * 170.82202 * 24 23 22 50 50 H 1.08998 * 109.67178 * 172.57851 * 25 24 23 51 51 H 1.08999 * 109.67328 * 52.04731 * 25 24 23 52 52 H 1.09006 * 109.39843 * 288.77671 * 26 25 24 53 53 H 1.08997 * 109.33478 * 168.98577 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5302 1.7691 2.4506 6 6 2.6346 3.2694 2.5479 7 1 3.0084 3.8400 1.7106 8 6 2.2519 3.9134 3.7053 9 7 1.7963 3.2184 4.7246 10 14 2.3806 5.7731 3.8257 11 1 1.1122 6.3883 3.3589 12 1 2.6293 6.1618 5.2372 13 1 3.5027 6.2476 2.9766 14 6 4.2759 0.9542 0.9587 15 8 4.6813 0.6730 -0.1492 16 6 5.2059 0.8814 2.1422 17 1 5.0995 1.7840 2.7441 18 6 4.8558 -0.3421 2.9915 19 6 5.6748 -0.3174 4.2837 20 6 5.1806 -1.4205 5.2218 21 6 7.1511 -0.5499 3.9562 22 7 6.5884 0.7691 1.6708 23 6 7.4971 1.8741 1.9497 24 6 8.9517 1.4117 1.8295 25 6 9.1278 0.7025 0.4814 26 6 8.3274 -0.6019 0.5127 27 6 6.9352 -0.3353 1.0088 28 8 6.0807 -1.1693 0.7962 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 1.4920 1.4673 2.5894 35 1 3.1481 1.3110 3.2230 36 1 1.5274 3.6715 5.5392 37 1 3.7933 -0.3238 3.2343 38 1 5.0853 -1.2497 2.4332 39 1 5.5584 0.6516 4.7691 40 1 5.2969 -2.3894 4.7364 41 1 5.7638 -1.4025 6.1425 42 1 4.1288 -1.2548 5.4551 43 1 7.7096 -0.6965 4.8807 44 1 7.2490 -1.4355 3.3283 45 1 7.5466 0.3167 3.4263 46 1 7.3120 2.6806 1.2403 47 1 7.3196 2.2401 2.9609 48 1 9.1880 0.7216 2.6394 49 1 9.6163 2.2744 1.8785 50 1 10.1826 0.4820 0.3178 51 1 8.7573 1.3412 -0.3204 52 1 8.8188 -1.3123 1.1776 53 1 8.2796 -1.0202 -0.4927 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293664815.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:19 Heat of formation + Delta-G solvation = -62.294109 kcal Electronic energy + Delta-G solvation = -32605.340818 eV Core-core repulsion = 28670.133335 eV Total energy + Delta-G solvation = -3935.207482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.32968 -40.23940 -37.66459 -37.14800 -37.08550 -35.18321 -34.49052 -33.89219 -31.07438 -30.22507 -29.36916 -27.95984 -27.21858 -25.58382 -25.17682 -24.48857 -23.11759 -21.24533 -20.99759 -20.27589 -19.20818 -18.58183 -18.33490 -17.72804 -17.04520 -16.78776 -16.59558 -16.25397 -16.09605 -15.84575 -15.49700 -15.11772 -14.96362 -14.62022 -14.36014 -14.31150 -14.24985 -14.08005 -14.04069 -13.85194 -13.38060 -13.06970 -12.99617 -12.95245 -12.76176 -12.66629 -12.47650 -12.43651 -12.30175 -12.17633 -12.00782 -11.90437 -11.84198 -11.72898 -11.63479 -11.56331 -11.45114 -10.82806 -10.58271 -10.33557 -10.27226 -9.48262 -9.43015 -8.19115 -6.34777 1.22112 1.41428 1.43854 1.52942 1.71403 1.84635 2.07255 2.38043 2.59755 3.10309 3.55741 3.74717 3.86548 3.91891 3.96418 3.97433 4.01363 4.03812 4.12298 4.19441 4.31187 4.42350 4.51270 4.54662 4.57980 4.62942 4.74209 4.74874 4.82617 4.83791 4.88754 4.91836 4.93344 4.97833 5.02069 5.06023 5.11040 5.13917 5.15173 5.21240 5.29719 5.36026 5.41641 5.50829 5.58036 5.61899 5.65412 5.72178 5.91620 6.05807 6.56990 6.67868 6.80427 7.28511 7.38615 7.47501 8.86208 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009373 B = 0.005078 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.610921 B = 5512.420721 C = 6352.799744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.181 4.181 3 C 0.144 3.856 4 N -0.598 5.598 5 C 0.250 3.750 6 C -0.550 4.550 7 H 0.050 0.950 8 C 0.028 3.972 9 N -0.914 5.914 10 Si 0.955 3.045 11 H -0.278 1.278 12 H -0.277 1.277 13 H -0.270 1.270 14 C 0.505 3.495 15 O -0.578 6.578 16 C 0.142 3.858 17 H 0.107 0.893 18 C -0.120 4.120 19 C -0.088 4.088 20 C -0.139 4.139 21 C -0.152 4.152 22 N -0.581 5.581 23 C 0.098 3.902 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.128 4.128 27 C 0.516 3.484 28 O -0.582 6.582 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.012 0.988 35 H 0.042 0.958 36 H 0.269 0.731 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.067 0.933 44 H 0.038 0.962 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.112 0.888 50 H 0.107 0.893 51 H 0.057 0.943 52 H 0.116 0.884 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.763 -4.137 -1.019 14.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.200 4.200 3 C 0.021 3.979 4 N -0.328 5.328 5 C 0.129 3.871 6 C -0.588 4.588 7 H 0.068 0.932 8 C -0.173 4.173 9 N -0.553 5.553 10 Si 0.780 3.220 11 H -0.203 1.203 12 H -0.202 1.202 13 H -0.194 1.194 14 C 0.293 3.707 15 O -0.459 6.459 16 C 0.034 3.966 17 H 0.125 0.875 18 C -0.159 4.159 19 C -0.106 4.106 20 C -0.197 4.197 21 C -0.209 4.209 22 N -0.313 5.313 23 C -0.023 4.023 24 C -0.164 4.164 25 C -0.154 4.154 26 C -0.168 4.168 27 C 0.307 3.693 28 O -0.463 6.463 29 H 0.124 0.876 30 H 0.136 0.864 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.031 0.969 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.098 0.902 46 H 0.074 0.926 47 H 0.105 0.895 48 H 0.107 0.893 49 H 0.131 0.869 50 H 0.125 0.875 51 H 0.076 0.924 52 H 0.134 0.866 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.506 -4.674 -1.519 14.372 hybrid contribution -0.921 0.986 -0.004 1.349 sum 12.585 -3.688 -1.523 13.202 Atomic orbital electron populations 1.24007 0.94777 1.03107 0.98170 1.23156 0.96870 0.97832 1.02129 1.20407 0.91979 0.95799 0.89701 1.48176 1.08978 1.63643 1.12037 1.19217 0.94979 0.94158 0.78712 1.21615 1.44554 0.92642 1.00020 0.93193 1.25596 0.94206 1.02546 0.94985 1.70017 1.43058 1.37393 1.04798 0.85607 0.78605 0.80227 0.77561 1.20332 1.20247 1.19416 1.21203 0.83119 0.75647 0.90771 1.90551 1.76634 1.51345 1.27349 1.20843 0.82037 1.01265 0.92445 0.87493 1.22006 0.99888 0.97802 0.96172 1.21024 0.96076 0.99572 0.93956 1.21765 1.00819 0.97882 0.99188 1.22256 0.94663 1.02220 1.01740 1.47188 1.09244 1.19230 1.55678 1.21784 0.90555 0.87978 1.02026 1.22008 0.93180 1.02874 0.98304 1.21654 1.01579 0.94446 0.97751 1.21699 0.90481 1.01191 1.03417 1.20646 0.91789 0.80645 0.76252 1.90603 1.52040 1.46586 1.57044 0.87579 0.86356 0.89154 0.90131 0.91165 0.96942 0.94029 0.92236 0.92722 0.90160 0.91789 0.93048 0.90911 0.93764 0.91447 0.94296 0.90175 0.92590 0.89460 0.89346 0.86950 0.87483 0.92429 0.86621 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 14.32 67.78 0.97 -4.07 16 2 C -0.18 -6.76 9.84 25.64 0.25 -6.51 16 3 C 0.14 6.02 5.95 85.63 0.51 6.53 16 4 N -0.60 -27.54 2.44 -830.49 -2.03 -29.57 16 5 C 0.25 12.35 4.58 85.63 0.39 12.75 16 6 C -0.55 -28.67 9.36 25.60 0.24 -28.43 16 7 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 8 C 0.03 1.43 5.46 84.65 0.46 1.90 16 9 N -0.91 -49.37 13.29 21.45 0.28 -49.09 16 10 Si 0.95 40.85 29.54 68.60 2.03 42.87 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 13 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 14 C 0.50 23.32 6.51 87.66 0.57 23.89 16 15 O -0.58 -29.31 13.78 17.95 0.25 -29.06 16 16 C 0.14 5.57 1.52 44.24 0.07 5.63 16 17 H 0.11 4.39 6.86 -2.39 -0.02 4.37 16 18 C -0.12 -4.55 3.67 30.60 0.11 -4.44 16 19 C -0.09 -2.66 2.89 -10.79 -0.03 -2.70 16 20 C -0.14 -3.83 9.17 71.98 0.66 -3.17 16 21 C -0.15 -3.75 7.69 71.98 0.55 -3.19 16 22 N -0.58 -18.75 1.22 -806.46 -0.99 -19.74 16 23 C 0.10 2.33 5.08 86.56 0.44 2.77 16 24 C -0.13 -1.88 5.75 30.75 0.18 -1.71 16 25 C -0.12 -1.90 6.03 30.73 0.19 -1.71 16 26 C -0.13 -2.92 6.03 29.71 0.18 -2.74 16 27 C 0.52 17.40 4.27 87.72 0.37 17.78 16 28 O -0.58 -25.30 12.48 17.95 0.22 -25.08 16 29 H 0.11 3.10 7.84 -2.91 -0.02 3.08 16 30 H 0.12 3.05 8.06 -2.91 -0.02 3.02 16 31 H 0.09 3.60 8.06 -2.91 -0.02 3.57 16 32 H 0.08 3.28 7.76 -2.38 -0.02 3.26 16 33 H 0.07 3.02 7.23 -2.38 -0.02 3.01 16 34 H 0.01 0.66 8.10 -2.38 -0.02 0.65 16 35 H 0.04 2.10 4.56 -2.38 -0.01 2.09 16 36 H 0.27 13.71 8.31 -92.70 -0.77 12.94 16 37 H 0.05 2.29 6.19 -2.39 -0.01 2.28 16 38 H 0.08 3.35 5.34 -2.39 -0.01 3.34 16 39 H 0.06 2.04 8.09 -2.38 -0.02 2.02 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16 44 H 0.04 1.04 7.27 -2.39 -0.02 1.02 16 45 H 0.08 1.84 2.26 -2.38 -0.01 1.83 16 46 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.09 1.92 7.58 -2.39 -0.02 1.90 16 48 H 0.09 1.15 6.83 -2.39 -0.02 1.14 16 49 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.06 1.11 8.12 -2.39 -0.02 1.09 16 52 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 53 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -69.66 401.73 6.76 -62.89 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: 0.88 Total: 34.18 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 6.11 Total: 12.58 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -2.73 Total: -98.39 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: 0.47 Total: -54.13 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.87 kcal Total: -69.66 6.76 -62.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293664815.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.600 kcal (2) G-P(sol) polarization free energy of solvation -69.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds