Wall clock time and date at job start Tue Mar 31 2020 19:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47636 * 2 1 4 4 C 1.53005 * 109.47051 * 120.00344 * 2 1 3 5 5 C 1.52998 * 109.47223 * 65.66211 * 4 2 1 6 6 H 1.09007 * 109.29473 * 305.25375 * 5 4 2 7 7 C 1.52909 * 109.14475 * 64.72468 * 5 4 2 8 8 C 1.53345 * 108.68770 * 170.94122 * 7 5 4 9 9 H 1.09008 * 109.70280 * 52.23030 * 8 7 5 10 10 C 1.50687 * 109.67495 * 172.74984 * 8 7 5 11 11 O 1.21283 * 120.00257 * 28.02374 * 10 8 7 12 12 N 1.34779 * 120.00230 * 208.03083 * 10 8 7 13 13 C 1.46496 * 119.99789 * 4.84783 * 12 10 8 14 14 C 1.50699 * 109.47556 * 267.02019 * 13 12 10 15 15 H 1.08001 * 119.99995 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00049 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99774 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99956 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47069 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46831 * 119.99976 * 18 16 14 21 21 H 1.48501 * 109.46985 * 239.99993 * 18 16 14 22 22 C 1.46498 * 120.00038 * 184.86020 * 12 10 8 23 23 C 1.53009 * 109.46701 * 265.67475 * 22 12 10 24 24 C 1.53000 * 117.49723 * 243.62201 * 23 22 12 25 25 C 1.53003 * 60.00196 * 252.51189 * 24 23 22 26 26 C 1.53072 * 108.42178 * 292.48562 * 8 7 5 27 27 C 1.50173 * 109.89631 * 48.90040 * 26 8 7 28 28 O 1.21278 * 118.24959 * 162.44091 * 27 26 8 29 29 N 1.33355 * 123.50540 * 342.41933 * 27 26 8 30 30 H 1.09006 * 109.46768 * 302.99756 * 1 2 3 31 31 H 1.08998 * 109.46967 * 62.99004 * 1 2 3 32 32 H 1.08998 * 109.47619 * 182.99518 * 1 2 3 33 33 H 1.09004 * 109.46970 * 240.00127 * 2 1 3 34 34 H 1.08997 * 109.47519 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47315 * 300.00059 * 3 2 1 36 36 H 1.09004 * 109.46837 * 60.00045 * 3 2 1 37 37 H 1.09004 * 109.46883 * 305.65860 * 4 2 1 38 38 H 1.09004 * 109.46900 * 185.65836 * 4 2 1 39 39 H 1.09000 * 109.58399 * 51.18608 * 7 5 4 40 40 H 1.09002 * 109.60490 * 290.70791 * 7 5 4 41 41 H 1.09000 * 109.47196 * 27.02514 * 13 12 10 42 42 H 1.08999 * 109.47051 * 147.01885 * 13 12 10 43 43 H 0.97000 * 119.99432 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.47315 * 145.68322 * 22 12 10 45 45 H 1.08996 * 109.47417 * 25.67386 * 22 12 10 46 46 H 1.08992 * 115.54792 * 29.33159 * 23 22 12 47 47 H 1.09001 * 117.50385 * 0.02562 * 24 23 22 48 48 H 1.09006 * 117.49541 * 145.02083 * 24 23 22 49 49 H 1.08992 * 117.49967 * 252.51235 * 25 24 23 50 50 H 1.09003 * 117.49637 * 107.48667 * 25 24 23 51 51 H 1.09001 * 109.39679 * 169.03284 * 26 8 7 52 52 H 1.08996 * 109.39809 * 288.85536 * 26 8 7 53 53 H 0.97005 * 117.94466 * 182.22985 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6495 -2.1990 1.1800 6 1 0.5723 -2.2805 1.0341 7 6 2.3699 -2.8534 0.0007 8 6 2.1549 -4.3699 0.0737 9 1 1.0902 -4.5863 0.1628 10 6 2.7025 -5.0205 -1.1703 11 8 3.6201 -4.5032 -1.7715 12 7 2.1726 -6.1772 -1.6150 13 6 0.9970 -6.7469 -0.9521 14 6 1.4409 -7.7243 0.1056 15 1 2.4936 -7.9029 0.2681 16 6 0.5033 -8.3897 0.8666 17 7 -0.7786 -8.1718 0.6690 18 14 1.0537 -9.6017 2.1771 19 1 2.5371 -9.6666 2.1997 20 1 0.5580 -9.1550 3.5038 21 1 0.5034 -10.9464 1.8702 22 6 2.7723 -6.8648 -2.7612 23 6 2.0479 -6.4471 -4.0426 24 6 1.2938 -7.5323 -4.8136 25 6 2.6029 -6.9683 -5.3698 26 6 2.8939 -4.9046 1.3030 27 6 2.5550 -4.0714 2.5055 28 8 2.7830 -4.5304 3.6047 29 7 2.0171 -2.8535 2.4294 30 1 -0.3633 0.5597 0.8620 31 1 -0.3633 0.4667 -0.9156 32 1 -0.3634 -1.0262 0.0537 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9562 0.8900 37 1 1.5962 -0.2694 2.1364 38 1 3.1253 -0.6344 1.3013 39 1 3.4358 -2.6321 0.0552 40 1 1.9620 -2.4708 -0.9350 41 1 0.4183 -5.9479 -0.4886 42 1 0.3796 -7.2629 -1.6874 43 1 -1.4382 -8.6402 1.2042 44 1 2.6806 -7.9426 -2.6270 45 1 3.8260 -6.5961 -2.8355 46 1 1.6196 -5.4448 -4.0350 47 1 1.3134 -8.5438 -4.4079 48 1 0.3690 -7.2441 -5.3135 49 1 2.5393 -6.3091 -6.2354 50 1 3.4840 -7.6088 -5.3300 51 1 2.5969 -5.9378 1.4829 52 1 3.9686 -4.8624 1.1260 53 1 1.8612 -2.3729 3.2575 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357409498.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:11 Heat of formation + Delta-G solvation = -91.421426 kcal Electronic energy + Delta-G solvation = -31077.141866 eV Core-core repulsion = 27140.671329 eV Total energy + Delta-G solvation = -3936.470538 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.88777 -40.52505 -38.71727 -38.22094 -36.43247 -36.10941 -34.41761 -34.13023 -31.16930 -29.69956 -28.30934 -27.94509 -27.64294 -25.24533 -24.46341 -23.68929 -23.18049 -21.74621 -20.64312 -20.33273 -19.81870 -18.56442 -18.32079 -17.89228 -17.46733 -17.23046 -16.50946 -16.32281 -16.02429 -15.99548 -15.69102 -15.30686 -14.88305 -14.66001 -14.51944 -14.45718 -14.28747 -14.09833 -13.75458 -13.52406 -13.35881 -13.12845 -12.92900 -12.88228 -12.72409 -12.61137 -12.55689 -12.45840 -12.32585 -12.20864 -11.94096 -11.88926 -11.77227 -11.66480 -11.57539 -11.35887 -11.29284 -11.16793 -10.78782 -10.63341 -10.37308 -10.04754 -9.46343 -8.21264 -6.32369 1.36406 1.42994 1.49664 1.53528 1.70212 2.22934 2.26339 2.41602 2.98037 3.10743 3.40819 3.57611 3.68455 3.79195 3.89691 3.95987 4.05127 4.07766 4.12816 4.14075 4.21147 4.26949 4.38200 4.43703 4.55101 4.66372 4.73684 4.76960 4.79405 4.85005 4.87299 4.91349 4.93716 4.96737 5.00362 5.04514 5.08264 5.12337 5.19003 5.22549 5.28010 5.29290 5.30858 5.40157 5.54456 5.57876 5.67191 5.84542 5.84567 6.06063 6.27251 6.57757 6.82506 7.17007 7.28923 7.41358 8.84194 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008210 B = 0.004624 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3409.784338 B = 6053.446718 C = 8346.873482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.115 4.115 5 C 0.140 3.860 6 H 0.089 0.911 7 C -0.103 4.103 8 C -0.100 4.100 9 H 0.097 0.903 10 C 0.521 3.479 11 O -0.583 6.583 12 N -0.592 5.592 13 C 0.254 3.746 14 C -0.536 4.536 15 H 0.054 0.946 16 C 0.031 3.969 17 N -0.914 5.914 18 Si 0.937 3.063 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.149 3.851 23 C -0.176 4.176 24 C -0.176 4.176 25 C -0.157 4.157 26 C -0.120 4.120 27 C 0.531 3.469 28 O -0.602 6.602 29 N -0.701 5.701 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.033 0.967 42 H 0.023 0.977 43 H 0.266 0.734 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.099 0.901 49 H 0.108 0.892 50 H 0.102 0.898 51 H 0.099 0.901 52 H 0.098 0.902 53 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 14.998 -5.836 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.153 4.153 5 C 0.036 3.964 6 H 0.106 0.894 7 C -0.141 4.141 8 C -0.121 4.121 9 H 0.115 0.885 10 C 0.309 3.691 11 O -0.465 6.465 12 N -0.320 5.320 13 C 0.134 3.866 14 C -0.574 4.574 15 H 0.072 0.928 16 C -0.170 4.170 17 N -0.553 5.553 18 Si 0.764 3.236 19 H -0.196 1.196 20 H -0.213 1.213 21 H -0.201 1.201 22 C 0.026 3.974 23 C -0.196 4.196 24 C -0.213 4.213 25 C -0.195 4.195 26 C -0.160 4.160 27 C 0.319 3.681 28 O -0.485 6.485 29 N -0.352 5.352 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.050 0.950 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.118 0.882 49 H 0.126 0.874 50 H 0.120 0.880 51 H 0.117 0.883 52 H 0.116 0.884 53 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.511 14.829 -5.757 16.105 hybrid contribution -0.149 -1.028 1.163 1.560 sum 2.362 13.801 -4.594 14.736 Atomic orbital electron populations 1.21944 0.94824 1.01946 1.02323 1.21112 0.96226 0.96661 0.97460 1.21805 1.00979 0.95131 1.02229 1.21953 1.02029 0.91592 0.99742 1.21263 0.99821 0.93106 0.82245 0.89359 1.21804 1.02205 0.90991 0.99107 1.21324 1.01899 0.96987 0.91886 0.88522 1.20549 0.82247 0.80721 0.85561 1.90585 1.31418 1.64520 1.60012 1.48187 1.30957 1.22224 1.30664 1.19104 0.82519 0.93351 0.91670 1.21635 0.92910 1.24364 1.18527 0.92801 1.25439 0.94864 0.98032 0.98647 1.69982 1.00764 1.43326 1.41261 0.85813 0.78701 0.79589 0.79520 1.19562 1.21268 1.20079 1.20917 0.96615 0.96385 0.83474 1.22562 1.05294 0.98777 0.92946 1.23064 0.96472 0.98080 1.03702 1.23002 0.97422 1.03353 0.95686 1.21499 1.02143 1.01080 0.91291 1.20056 0.75859 0.82042 0.90191 1.90706 1.56284 1.71591 1.29885 1.45511 1.62341 1.16208 1.11097 0.91939 0.92319 0.92819 0.91135 0.92708 0.92262 0.92119 0.89739 0.91047 0.90414 0.88595 0.94968 0.95921 0.92479 0.90944 0.90928 0.89187 0.89085 0.88213 0.87369 0.87985 0.88298 0.88351 0.75786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.03 71.98 0.65 -1.51 16 2 C -0.10 -1.39 2.79 -10.79 -0.03 -1.42 16 3 C -0.14 -1.80 9.19 71.98 0.66 -1.13 16 4 C -0.12 -1.79 4.35 30.60 0.13 -1.66 16 5 C 0.14 2.97 3.04 45.10 0.14 3.11 16 6 H 0.09 1.82 6.29 -2.38 -0.01 1.80 16 7 C -0.10 -2.67 3.55 30.68 0.11 -2.56 16 8 C -0.10 -3.38 2.05 -11.40 -0.02 -3.41 16 9 H 0.10 3.51 5.81 -2.38 -0.01 3.49 16 10 C 0.52 20.03 6.73 87.65 0.59 20.61 16 11 O -0.58 -23.87 15.87 -3.04 -0.05 -23.92 16 12 N -0.59 -23.62 2.46 -826.17 -2.03 -25.65 16 13 C 0.25 11.58 5.00 85.63 0.43 12.01 16 14 C -0.54 -26.95 7.85 25.60 0.20 -26.75 16 15 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 16 C 0.03 1.62 5.46 84.65 0.46 2.09 16 17 N -0.91 -49.63 13.29 21.45 0.28 -49.35 16 18 Si 0.94 42.93 29.54 68.60 2.03 44.96 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 C 0.15 5.32 5.72 86.38 0.49 5.82 16 23 C -0.18 -5.41 6.01 -10.79 -0.06 -5.47 16 24 C -0.18 -4.70 10.18 30.60 0.31 -4.39 16 25 C -0.16 -3.73 10.25 30.60 0.31 -3.42 16 26 C -0.12 -4.43 5.34 29.71 0.16 -4.27 16 27 C 0.53 18.98 7.71 87.71 0.68 19.66 16 28 O -0.60 -26.37 17.78 -3.02 -0.05 -26.42 16 29 N -0.70 -18.41 5.12 -446.66 -2.29 -20.70 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.84 6.35 -2.39 -0.02 0.82 16 33 H 0.07 1.16 6.49 -2.39 -0.02 1.14 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.15 8.12 -2.38 -0.02 1.14 16 39 H 0.08 2.08 8.04 -2.39 -0.02 2.06 16 40 H 0.10 2.31 6.88 -2.39 -0.02 2.29 16 41 H 0.03 1.52 5.76 -2.39 -0.01 1.51 16 42 H 0.02 1.11 8.09 -2.39 -0.02 1.09 16 43 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 44 H 0.07 2.64 7.84 -2.39 -0.02 2.62 16 45 H 0.07 2.62 7.36 -2.39 -0.02 2.60 16 46 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 47 H 0.09 2.52 8.03 -2.39 -0.02 2.50 16 48 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 49 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.10 4.32 6.44 -2.39 -0.02 4.30 16 52 H 0.10 3.51 8.09 -2.39 -0.02 3.49 16 53 H 0.41 9.20 8.67 -92.70 -0.80 8.40 16 Total: -1.00 -63.37 415.38 3.19 -60.17 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.09 Total: 33.60 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.21 Total: 7.30 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -4.03 Total: -95.70 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.10 Total: -50.34 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -63.37 3.19 -60.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357409498.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.247 kcal (2) G-P(sol) polarization free energy of solvation -63.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds