Wall clock time and date at job start Tue Mar 31 2020 19:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47185 * 2 1 4 4 C 1.52995 * 109.47273 * 120.00534 * 2 1 3 5 5 C 1.52999 * 109.47532 * 174.99944 * 4 2 1 6 6 H 1.09002 * 109.29509 * 54.57530 * 5 4 2 7 7 C 1.52901 * 109.14323 * 174.04945 * 5 4 2 8 8 C 1.53351 * 108.68487 * 170.93665 * 7 5 4 9 9 H 1.08996 * 109.67422 * 172.74691 * 8 7 5 10 10 C 1.50698 * 109.67236 * 52.21723 * 8 7 5 11 11 O 1.21285 * 119.99793 * 265.98105 * 10 8 7 12 12 N 1.34772 * 120.00391 * 85.97700 * 10 8 7 13 13 C 1.46505 * 119.99807 * 5.04412 * 12 10 8 14 14 C 1.50701 * 109.47081 * 89.99801 * 13 12 10 15 15 H 1.08000 * 120.00229 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00144 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99835 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00068 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47307 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47112 * 119.99682 * 18 16 14 21 21 H 1.48502 * 109.46956 * 239.99363 * 18 16 14 22 22 C 1.46498 * 120.00426 * 185.04113 * 12 10 8 23 23 C 1.52995 * 109.47384 * 94.96043 * 22 12 10 24 24 C 1.53004 * 117.49864 * 243.24433 * 23 22 12 25 25 C 1.53003 * 117.50171 * 174.62132 * 23 22 12 26 26 C 1.53063 * 108.42482 * 292.48269 * 8 7 5 27 27 C 1.50176 * 109.89220 * 48.89909 * 26 8 7 28 28 O 1.21282 * 118.24498 * 162.39523 * 27 26 8 29 29 N 1.33357 * 123.51019 * 342.41833 * 27 26 8 30 30 H 1.09000 * 109.46742 * 300.00466 * 1 2 3 31 31 H 1.09008 * 109.47064 * 59.99406 * 1 2 3 32 32 H 1.08994 * 109.47334 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46693 * 240.00052 * 2 1 3 34 34 H 1.09004 * 109.47262 * 60.00401 * 3 2 1 35 35 H 1.09007 * 109.47111 * 180.02562 * 3 2 1 36 36 H 1.09009 * 109.47187 * 299.99931 * 3 2 1 37 37 H 1.09003 * 109.47277 * 54.99311 * 4 2 1 38 38 H 1.09007 * 109.46933 * 294.99788 * 4 2 1 39 39 H 1.09003 * 109.58823 * 51.18377 * 7 5 4 40 40 H 1.08995 * 109.60625 * 290.70470 * 7 5 4 41 41 H 1.08996 * 109.47184 * 209.99299 * 13 12 10 42 42 H 1.08997 * 109.47233 * 330.00084 * 13 12 10 43 43 H 0.97000 * 120.00271 * 180.02562 * 17 16 14 44 44 H 1.09006 * 109.47019 * 214.95973 * 22 12 10 45 45 H 1.09004 * 109.47192 * 334.95768 * 22 12 10 46 46 H 1.09002 * 115.54928 * 28.94960 * 23 22 12 47 47 H 1.08996 * 117.49678 * 359.97438 * 24 23 22 48 48 H 1.08999 * 117.49512 * 145.01523 * 24 23 22 49 49 H 1.09000 * 117.49843 * 214.97813 * 25 23 22 50 50 H 1.08994 * 117.49660 * 359.97438 * 25 23 22 51 51 H 1.08998 * 109.39929 * 169.02899 * 26 8 7 52 52 H 1.09003 * 109.40372 * 288.85514 * 26 8 7 53 53 H 0.96998 * 117.94176 * 182.21915 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8312 1.1879 6 1 3.9921 0.1615 1.0452 7 6 4.0786 -1.4178 2.5031 8 6 5.5710 -1.7352 2.3498 9 1 5.9837 -2.0331 3.3136 10 6 6.2987 -0.5180 1.8400 11 8 6.4872 -0.3783 0.6501 12 7 6.7401 0.4154 2.7063 13 6 6.6112 0.1950 4.1489 14 6 7.8445 -0.5023 4.6627 15 1 8.6440 -0.7564 3.9826 16 6 7.9516 -0.8169 6.0008 17 7 6.9777 -0.5080 6.8289 18 14 9.4805 -1.6807 6.6377 19 1 10.4214 -1.9151 5.5131 20 1 10.1370 -0.8321 7.6643 21 1 9.0981 -2.9822 7.2421 22 6 7.3487 1.6502 2.2054 23 6 6.2859 2.7481 2.1288 24 6 5.9534 3.3143 0.7468 25 6 6.7498 4.1551 1.7466 26 6 5.7212 -2.8826 1.3480 27 6 4.9172 -2.5915 0.1134 28 8 5.1689 -3.2155 -0.8957 29 7 3.9417 -1.6834 0.0672 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6054 -1.7199 1.2950 38 1 1.7517 -0.1584 2.1369 39 1 3.5320 -2.3323 2.7335 40 1 3.9392 -0.6936 3.3057 41 1 6.4992 1.1542 4.6544 42 1 5.7356 -0.4237 4.3452 43 1 7.0531 -0.7290 7.7704 44 1 8.1456 1.9624 2.8806 45 1 7.7621 1.4747 1.2122 46 1 5.4713 2.6648 2.8483 47 1 6.4921 2.9048 -0.1077 48 1 4.9197 3.6034 0.5569 49 1 6.2402 4.9975 2.2144 50 1 7.8123 4.2987 1.5502 51 1 6.7716 -2.9928 1.0785 52 1 5.3647 -3.8078 1.8009 53 1 3.4522 -1.5842 -0.7643 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357409499.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:14 Heat of formation + Delta-G solvation = -89.745110 kcal Electronic energy + Delta-G solvation = -31879.504473 eV Core-core repulsion = 27943.106626 eV Total energy + Delta-G solvation = -3936.397847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.08183 -40.25733 -38.54253 -38.20297 -36.41579 -36.11431 -34.39918 -33.89605 -31.34724 -29.68139 -28.38193 -28.01433 -27.41157 -25.19053 -24.49086 -23.32319 -23.19220 -21.98248 -21.09177 -20.59031 -19.33852 -18.54654 -18.16827 -17.84166 -17.24051 -16.98023 -16.63963 -16.32721 -16.07184 -15.73592 -15.68180 -15.29181 -14.97058 -14.73196 -14.55001 -14.46520 -14.23007 -14.03648 -13.61663 -13.34559 -13.15997 -13.05608 -12.98078 -12.92832 -12.76859 -12.67370 -12.56506 -12.51619 -12.40250 -12.34066 -12.06978 -12.05719 -11.68840 -11.64994 -11.53915 -11.38952 -11.29064 -10.84775 -10.71823 -10.65314 -10.41291 -9.96089 -9.40926 -8.18296 -6.31634 1.40509 1.45817 1.54309 1.70118 1.80543 2.26593 2.41630 2.46155 2.95354 3.12377 3.51584 3.58467 3.65147 3.77451 3.85681 3.88273 4.02686 4.03908 4.10788 4.15310 4.28358 4.34118 4.42651 4.51090 4.58272 4.70889 4.71892 4.77171 4.78339 4.81840 4.83040 4.87763 4.90075 4.95982 5.01028 5.01850 5.02991 5.05702 5.12807 5.20113 5.26898 5.29181 5.31623 5.36087 5.49521 5.50110 5.69156 5.89392 5.90491 6.10195 6.42442 6.61607 6.85638 7.27922 7.34441 7.45845 8.86521 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009987 B = 0.004387 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.103649 B = 6380.693197 C = 7445.835858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.118 4.118 5 C 0.141 3.859 6 H 0.063 0.937 7 C -0.114 4.114 8 C -0.112 4.112 9 H 0.112 0.888 10 C 0.519 3.481 11 O -0.585 6.585 12 N -0.591 5.591 13 C 0.253 3.747 14 C -0.549 4.549 15 H 0.045 0.955 16 C 0.031 3.969 17 N -0.912 5.912 18 Si 0.946 3.054 19 H -0.277 1.277 20 H -0.280 1.280 21 H -0.275 1.275 22 C 0.147 3.853 23 C -0.174 4.174 24 C -0.169 4.169 25 C -0.161 4.161 26 C -0.114 4.114 27 C 0.537 3.463 28 O -0.616 6.616 29 N -0.693 5.693 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.021 0.979 42 H 0.045 0.955 43 H 0.268 0.732 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.099 0.901 47 H 0.081 0.919 48 H 0.102 0.898 49 H 0.110 0.890 50 H 0.097 0.903 51 H 0.082 0.918 52 H 0.131 0.869 53 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.421 4.432 -6.611 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.156 4.156 5 C 0.037 3.963 6 H 0.081 0.919 7 C -0.152 4.152 8 C -0.133 4.133 9 H 0.130 0.870 10 C 0.308 3.692 11 O -0.467 6.467 12 N -0.321 5.321 13 C 0.132 3.868 14 C -0.587 4.587 15 H 0.064 0.936 16 C -0.170 4.170 17 N -0.551 5.551 18 Si 0.773 3.227 19 H -0.202 1.202 20 H -0.206 1.206 21 H -0.201 1.201 22 C 0.024 3.976 23 C -0.194 4.194 24 C -0.206 4.206 25 C -0.198 4.198 26 C -0.154 4.154 27 C 0.326 3.674 28 O -0.499 6.499 29 N -0.343 5.343 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.117 0.883 47 H 0.099 0.901 48 H 0.120 0.880 49 H 0.129 0.871 50 H 0.116 0.884 51 H 0.100 0.900 52 H 0.149 0.851 53 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -12.124 4.196 -7.285 14.753 hybrid contribution 1.196 -0.287 0.334 1.274 sum -10.928 3.908 -6.951 13.528 Atomic orbital electron populations 1.21788 0.93706 1.02138 1.02269 1.21104 0.96848 0.96093 0.97541 1.21893 1.00368 0.96140 1.02238 1.22024 0.91686 1.02318 0.99560 1.21098 0.96539 0.93273 0.85412 0.91894 1.21917 0.91858 1.04152 0.97268 1.21456 0.97979 0.92748 1.01150 0.86986 1.20662 0.78537 0.84424 0.85534 1.90626 1.59859 1.79029 1.17174 1.48101 1.58103 1.17630 1.08221 1.19140 0.96631 0.96549 0.74468 1.21706 1.04267 1.39114 0.93657 0.93644 1.25474 0.98643 0.96089 0.96820 1.69974 1.33179 1.47433 1.04533 0.85683 0.80212 0.78670 0.78159 1.20195 1.20593 1.20097 1.20858 0.94418 0.83202 0.99132 1.22578 1.01770 0.95220 0.99782 1.22950 1.01397 1.03871 0.92374 1.23008 1.00952 0.93221 1.02618 1.21487 1.00967 1.00050 0.92876 1.20090 0.79275 0.78150 0.89861 1.90661 1.69469 1.52811 1.36997 1.45369 1.35310 1.37417 1.16241 0.91997 0.92379 0.92283 0.92160 0.91942 0.94039 0.92292 0.90070 0.89005 0.87547 0.88756 0.96105 0.93758 0.92289 0.91255 0.91776 0.88286 0.90062 0.87976 0.87136 0.88424 0.89969 0.85095 0.76744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.19 71.98 0.66 -1.22 16 2 C -0.10 -1.61 2.85 -10.80 -0.03 -1.64 16 3 C -0.15 -2.65 8.95 71.98 0.64 -2.00 16 4 C -0.12 -2.05 4.31 30.59 0.13 -1.92 16 5 C 0.14 3.43 2.24 45.10 0.10 3.54 16 6 H 0.06 1.81 5.40 -2.39 -0.01 1.80 16 7 C -0.11 -2.89 4.79 30.68 0.15 -2.74 16 8 C -0.11 -3.66 2.20 -11.40 -0.03 -3.69 16 9 H 0.11 4.00 6.45 -2.39 -0.02 3.98 16 10 C 0.52 20.01 5.51 87.66 0.48 20.50 16 11 O -0.59 -25.17 13.98 -3.04 -0.04 -25.22 16 12 N -0.59 -23.16 2.46 -826.16 -2.03 -25.18 16 13 C 0.25 11.02 4.81 85.63 0.41 11.43 16 14 C -0.55 -27.14 9.10 25.60 0.23 -26.91 16 15 H 0.05 2.36 7.81 -2.91 -0.02 2.34 16 16 C 0.03 1.54 5.46 84.66 0.46 2.00 16 17 N -0.91 -47.00 13.29 21.45 0.28 -46.72 16 18 Si 0.95 40.44 29.54 68.60 2.03 42.46 16 19 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 22 C 0.15 5.30 5.78 86.38 0.50 5.79 16 23 C -0.17 -5.16 6.01 -10.79 -0.06 -5.22 16 24 C -0.17 -4.33 10.18 30.60 0.31 -4.02 16 25 C -0.16 -3.78 10.25 30.60 0.31 -3.47 16 26 C -0.11 -3.68 5.23 29.70 0.16 -3.53 16 27 C 0.54 18.87 6.38 87.71 0.56 19.43 16 28 O -0.62 -26.31 17.78 -3.04 -0.05 -26.36 16 29 N -0.69 -19.79 4.89 -446.67 -2.19 -21.98 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 1.08 6.52 -2.39 -0.02 1.07 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.04 0.91 6.45 -2.38 -0.02 0.89 16 36 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.11 2.18 8.10 -2.39 -0.02 2.16 16 40 H 0.09 2.39 7.23 -2.39 -0.02 2.37 16 41 H 0.02 0.97 8.07 -2.39 -0.02 0.95 16 42 H 0.04 1.91 5.39 -2.39 -0.01 1.89 16 43 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 44 H 0.07 2.57 8.11 -2.38 -0.02 2.55 16 45 H 0.06 2.43 6.95 -2.38 -0.02 2.42 16 46 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 47 H 0.08 2.29 8.03 -2.39 -0.02 2.27 16 48 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.08 2.98 8.10 -2.39 -0.02 2.96 16 52 H 0.13 3.38 8.14 -2.39 -0.02 3.36 16 53 H 0.40 10.63 6.96 -92.71 -0.65 9.99 16 Total: -1.00 -63.26 412.10 3.24 -60.02 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.25 Total: 36.63 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 5.00 Total: 6.35 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -3.93 Total: -93.88 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -0.10 Total: -51.58 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Total: -63.26 3.24 -60.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357409499.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.725 kcal (2) G-P(sol) polarization free energy of solvation -63.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds