Wall clock time and date at job start Tue Mar 31 2020 19:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46921 * 2 1 4 4 C 1.52996 * 109.47324 * 239.99648 * 2 1 3 5 5 C 1.53004 * 109.47044 * 185.00025 * 4 2 1 6 6 H 1.08997 * 109.29991 * 304.99874 * 5 4 2 7 7 C 1.52927 * 109.30135 * 185.41952 * 5 4 2 8 8 C 1.53262 * 108.71308 * 188.73608 * 7 5 4 9 9 H 1.09003 * 109.70731 * 187.45590 * 8 7 5 10 10 C 1.50697 * 109.85001 * 308.08866 * 8 7 5 11 11 O 1.21280 * 119.99855 * 94.92076 * 10 8 7 12 12 N 1.34771 * 119.99780 * 274.91588 * 10 8 7 13 13 C 1.46503 * 120.00235 * 5.07402 * 12 10 8 14 14 C 1.50696 * 109.46996 * 95.37313 * 13 12 10 15 15 H 1.08000 * 120.00250 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00085 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99883 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00187 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47034 * 59.99743 * 18 16 14 20 20 H 1.48491 * 109.47189 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46939 * 299.99914 * 18 16 14 22 22 C 1.46503 * 120.00139 * 185.07444 * 12 10 8 23 23 C 1.52995 * 109.47222 * 86.28061 * 22 12 10 24 24 C 1.52999 * 117.49926 * 243.75105 * 23 22 12 25 25 C 1.53002 * 117.49965 * 175.09148 * 23 22 12 26 26 C 1.53074 * 108.24653 * 67.81518 * 8 7 5 27 27 C 1.50170 * 109.89253 * 311.03262 * 26 8 7 28 28 O 1.21279 * 118.24847 * 197.55644 * 27 26 8 29 29 N 1.33358 * 123.50970 * 17.57764 * 27 26 8 30 30 H 1.09003 * 109.46806 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47399 * 299.99877 * 1 2 3 32 32 H 1.08996 * 109.47150 * 60.00545 * 1 2 3 33 33 H 1.09006 * 109.47249 * 119.99503 * 2 1 3 34 34 H 1.09003 * 109.46826 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46763 * 299.99692 * 3 2 1 36 36 H 1.08993 * 109.46983 * 59.99868 * 3 2 1 37 37 H 1.09002 * 109.47514 * 305.00019 * 4 2 1 38 38 H 1.09003 * 109.46826 * 64.99977 * 4 2 1 39 39 H 1.08999 * 109.59832 * 308.69483 * 7 5 4 40 40 H 1.08998 * 109.60006 * 69.17390 * 7 5 4 41 41 H 1.08999 * 109.47212 * 215.37178 * 13 12 10 42 42 H 1.09000 * 109.47091 * 335.37317 * 13 12 10 43 43 H 0.96999 * 120.00319 * 180.02562 * 17 16 14 44 44 H 1.09004 * 109.47551 * 206.28438 * 22 12 10 45 45 H 1.09005 * 109.46787 * 326.28005 * 22 12 10 46 46 H 1.08997 * 115.55020 * 29.41789 * 23 22 12 47 47 H 1.09002 * 117.49844 * 359.97438 * 24 23 22 48 48 H 1.09006 * 117.50112 * 145.02231 * 24 23 22 49 49 H 1.09007 * 117.49711 * 214.98044 * 25 23 22 50 50 H 1.08996 * 117.50065 * 359.97438 * 25 23 22 51 51 H 1.08994 * 109.40351 * 190.89877 * 26 8 7 52 52 H 1.09005 * 109.39908 * 71.16047 * 26 8 7 53 53 H 0.96997 * 117.94891 * 177.79951 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.8311 -1.1878 6 1 3.9924 0.1624 -1.0526 7 6 4.0816 -1.4298 -2.4967 8 6 5.5751 -1.7371 -2.3410 9 1 5.9901 -2.0402 -3.3023 10 6 6.2993 -0.5148 -1.8384 11 8 6.5023 -0.3759 -0.6508 12 7 6.7213 0.4237 -2.7086 13 6 6.3800 0.3122 -4.1289 14 6 5.1459 1.1285 -4.4145 15 1 4.6637 1.6753 -3.6177 16 6 4.6316 1.1764 -5.6930 17 7 5.2185 0.5102 -6.6632 18 14 3.1014 2.1877 -6.0469 19 1 3.3598 3.6108 -5.7105 20 1 2.7555 2.0748 -7.4866 21 1 1.9728 1.6818 -5.2250 22 6 7.5215 1.5556 -2.2342 23 6 8.9996 1.1614 -2.2119 24 6 9.7026 1.1323 -0.8533 25 6 10.0153 2.2481 -1.8535 26 6 5.7270 -2.8776 -1.3315 27 6 4.9204 -2.5809 -0.1000 28 8 5.1716 -3.1981 0.9133 29 7 3.9422 -1.6753 -0.0612 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 1.6054 -1.7199 -1.2951 38 1 1.7516 -0.1584 -2.1369 39 1 3.5378 -2.3480 -2.7185 40 1 3.9413 -0.7141 -3.3067 41 1 7.2087 0.6833 -4.7320 42 1 6.1901 -0.7323 -4.3760 43 1 4.8569 0.5442 -7.5627 44 1 7.3820 2.4049 -2.9031 45 1 7.2032 1.8293 -1.2283 46 1 9.2987 0.4165 -2.9493 47 1 9.1121 1.3945 0.0246 48 1 10.4645 0.3686 -0.6970 49 1 10.9827 2.2179 -2.3549 50 1 9.6304 3.2440 -1.6340 51 1 6.7773 -2.9831 -1.0597 52 1 5.3753 -3.8070 -1.7795 53 1 3.4513 -1.5718 0.7689 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357409501.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:17 Heat of formation + Delta-G solvation = -87.017878 kcal Electronic energy + Delta-G solvation = -31991.951822 eV Core-core repulsion = 28055.672236 eV Total energy + Delta-G solvation = -3936.279585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.06498 -40.24934 -38.54925 -38.16896 -36.42762 -36.10844 -34.35499 -33.89322 -31.29873 -29.64248 -28.36340 -28.06203 -27.43819 -25.05869 -24.56544 -23.31664 -23.20521 -21.97290 -21.12580 -20.65209 -19.28081 -18.43947 -18.20549 -17.80871 -17.20797 -16.96384 -16.61219 -16.25990 -16.09339 -15.83715 -15.68233 -15.30464 -14.87708 -14.78364 -14.53330 -14.36606 -14.32385 -13.88882 -13.62101 -13.33996 -13.20741 -13.06928 -13.01860 -12.89870 -12.71147 -12.65594 -12.55429 -12.51155 -12.40462 -12.36299 -12.01716 -11.92338 -11.70909 -11.66874 -11.56915 -11.39476 -11.30253 -10.86446 -10.71710 -10.60891 -10.36450 -9.95494 -9.39324 -8.12793 -6.24751 1.46596 1.50125 1.54992 1.72648 1.82430 2.27211 2.42825 2.49976 2.93909 3.18345 3.53696 3.59720 3.69589 3.80530 3.84302 3.89186 3.98550 4.02119 4.10549 4.14337 4.27302 4.35749 4.41627 4.49381 4.56499 4.72085 4.72628 4.74813 4.75629 4.76482 4.80404 4.83187 4.89625 4.99496 4.99955 5.01168 5.05328 5.08471 5.18243 5.24528 5.25203 5.29331 5.32061 5.36261 5.45574 5.46875 5.73747 5.88962 5.90878 6.13637 6.45346 6.66277 6.89310 7.29148 7.37484 7.49525 8.92378 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.007096 B = 0.006118 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3944.750900 B = 4575.681270 C = 6828.702583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.120 4.120 5 C 0.146 3.854 6 H 0.055 0.945 7 C -0.122 4.122 8 C -0.106 4.106 9 H 0.113 0.887 10 C 0.517 3.483 11 O -0.582 6.582 12 N -0.592 5.592 13 C 0.250 3.750 14 C -0.531 4.531 15 H 0.055 0.945 16 C 0.031 3.969 17 N -0.917 5.917 18 Si 0.940 3.060 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.261 1.261 22 C 0.153 3.847 23 C -0.179 4.179 24 C -0.173 4.173 25 C -0.156 4.156 26 C -0.112 4.112 27 C 0.536 3.464 28 O -0.615 6.615 29 N -0.695 5.695 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.013 0.987 42 H 0.041 0.959 43 H 0.266 0.734 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.109 0.891 50 H 0.102 0.898 51 H 0.090 0.910 52 H 0.133 0.867 53 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 -0.704 6.305 7.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.207 4.207 4 C -0.158 4.158 5 C 0.041 3.959 6 H 0.073 0.927 7 C -0.160 4.160 8 C -0.127 4.127 9 H 0.131 0.869 10 C 0.306 3.694 11 O -0.463 6.463 12 N -0.321 5.321 13 C 0.129 3.871 14 C -0.570 4.570 15 H 0.073 0.927 16 C -0.170 4.170 17 N -0.556 5.556 18 Si 0.767 3.233 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.186 1.186 22 C 0.030 3.970 23 C -0.198 4.198 24 C -0.210 4.210 25 C -0.194 4.194 26 C -0.152 4.152 27 C 0.325 3.675 28 O -0.499 6.499 29 N -0.344 5.344 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.031 0.969 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.102 0.898 48 H 0.114 0.886 49 H 0.128 0.872 50 H 0.120 0.880 51 H 0.109 0.891 52 H 0.151 0.849 53 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -3.440 -0.968 6.977 7.839 hybrid contribution -0.581 0.837 -0.341 1.074 sum -4.021 -0.130 6.637 7.761 Atomic orbital electron populations 1.21786 0.93626 1.02296 1.02169 1.21104 0.96952 0.95792 0.97570 1.21893 1.00224 0.96524 1.02067 1.22006 0.92320 1.02185 0.99252 1.20979 0.96155 0.93156 0.85564 0.92660 1.21980 0.92279 1.04061 0.97715 1.21403 0.97879 0.92698 1.00695 0.86890 1.20662 0.78342 0.84830 0.85566 1.90632 1.59352 1.79291 1.17033 1.48126 1.50706 1.23257 1.10014 1.19192 0.94914 0.97742 0.75259 1.21492 1.11286 1.29963 0.94229 0.92692 1.25468 0.99425 0.96193 0.95881 1.69984 1.41403 1.42529 1.01679 0.85870 0.80972 0.79387 0.77112 1.20541 1.21451 1.18584 1.20810 0.88063 0.88788 0.99360 1.22636 0.93691 1.03625 0.99839 1.22948 1.03087 1.02111 0.92870 1.23023 0.99720 0.94343 1.02294 1.21528 1.01194 0.99911 0.92600 1.20159 0.79259 0.77967 0.90091 1.90659 1.69608 1.52981 1.36657 1.45436 1.35255 1.37835 1.15922 0.91927 0.92014 0.92554 0.91518 0.94333 0.92703 0.91817 0.89817 0.90237 0.88217 0.88120 0.96869 0.94119 0.92493 0.90533 0.92029 0.88869 0.89816 0.88629 0.87245 0.87983 0.89145 0.84906 0.76898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.19 71.98 0.66 -1.79 16 2 C -0.10 -2.02 2.84 -10.79 -0.03 -2.05 16 3 C -0.15 -3.52 8.95 71.98 0.64 -2.87 16 4 C -0.12 -2.77 4.32 30.59 0.13 -2.64 16 5 C 0.15 4.22 2.25 45.11 0.10 4.32 16 6 H 0.06 1.92 5.43 -2.39 -0.01 1.91 16 7 C -0.12 -3.64 4.86 30.66 0.15 -3.49 16 8 C -0.11 -3.38 2.26 -11.43 -0.03 -3.41 16 9 H 0.11 3.53 6.25 -2.39 -0.01 3.52 16 10 C 0.52 19.60 5.47 87.66 0.48 20.08 16 11 O -0.58 -24.63 14.18 -3.03 -0.04 -24.67 16 12 N -0.59 -22.87 2.46 -826.16 -2.04 -24.91 16 13 C 0.25 10.70 4.86 85.63 0.42 11.11 16 14 C -0.53 -24.41 7.61 25.60 0.19 -24.22 16 15 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 16 C 0.03 1.48 5.46 84.66 0.46 1.94 16 17 N -0.92 -46.42 13.29 21.45 0.28 -46.13 16 18 Si 0.94 38.08 29.54 68.60 2.03 40.11 16 19 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.29 -11.78 7.11 99.48 0.71 -11.08 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 C 0.15 5.49 5.71 86.38 0.49 5.98 16 23 C -0.18 -5.61 5.99 -10.79 -0.06 -5.67 16 24 C -0.17 -4.89 10.18 30.62 0.31 -4.58 16 25 C -0.16 -3.88 10.25 30.62 0.31 -3.56 16 26 C -0.11 -3.41 5.21 29.71 0.15 -3.26 16 27 C 0.54 18.81 6.38 87.71 0.56 19.37 16 28 O -0.62 -25.94 17.78 -3.03 -0.05 -25.99 16 29 N -0.69 -21.20 4.91 -446.63 -2.19 -23.39 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.40 6.49 -2.38 -0.02 1.39 16 34 H 0.04 1.07 6.46 -2.39 -0.02 1.05 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.10 2.45 8.10 -2.39 -0.02 2.43 16 40 H 0.10 3.49 6.00 -2.39 -0.01 3.48 16 41 H 0.01 0.62 8.11 -2.39 -0.02 0.60 16 42 H 0.04 1.77 5.65 -2.39 -0.01 1.75 16 43 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 44 H 0.08 2.77 8.04 -2.39 -0.02 2.75 16 45 H 0.06 2.29 7.20 -2.38 -0.02 2.28 16 46 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 47 H 0.08 2.54 8.03 -2.39 -0.02 2.52 16 48 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 49 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 50 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 51 H 0.09 2.91 8.10 -2.39 -0.02 2.89 16 52 H 0.13 3.13 8.14 -2.38 -0.02 3.11 16 53 H 0.39 11.36 6.94 -92.71 -0.64 10.72 16 Total: -1.00 -59.63 409.94 3.19 -56.44 By element: Atomic # 1 Polarization: 43.04 SS G_CDS: 0.25 Total: 43.30 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 4.95 Total: 5.25 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -3.94 Total: -94.43 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.10 Total: -50.67 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -59.63 3.19 -56.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357409501.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.580 kcal (2) G-P(sol) polarization free energy of solvation -59.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds