Wall clock time and date at job start Tue Mar 31 2020 19:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47529 * 2 1 4 4 C 1.53000 * 109.47388 * 120.00583 * 2 1 3 5 5 C 1.52999 * 109.47530 * 174.99635 * 4 2 1 6 6 H 1.09000 * 109.12470 * 55.52156 * 5 4 2 7 7 C 1.52919 * 109.30221 * 174.99662 * 5 4 2 8 8 C 1.53339 * 108.67500 * 171.06647 * 7 5 4 9 9 H 1.08997 * 109.67567 * 172.69909 * 8 7 5 10 10 C 1.50706 * 109.67391 * 52.20656 * 8 7 5 11 11 O 1.21291 * 119.99537 * 261.57583 * 10 8 7 12 12 N 1.34767 * 120.00272 * 81.58125 * 10 8 7 13 13 C 1.37103 * 119.99958 * 356.28399 * 12 10 8 14 14 H 1.08006 * 119.99904 * 235.75582 * 13 12 10 15 15 C 1.38947 * 120.00229 * 55.75146 * 13 12 10 16 16 N 1.31415 * 120.00336 * 202.89695 * 15 13 12 17 17 Si 1.86802 * 119.99613 * 22.90207 * 15 13 12 18 18 H 1.48508 * 109.47185 * 180.34884 * 17 15 13 19 19 H 1.48496 * 109.47429 * 60.34922 * 17 15 13 20 20 H 1.48504 * 109.47198 * 300.34761 * 17 15 13 21 21 C 1.46500 * 120.00371 * 176.28798 * 12 10 8 22 22 C 1.54268 * 110.03106 * 237.90820 * 21 12 10 23 23 C 1.54968 * 104.15583 * 217.13237 * 22 21 12 24 24 C 1.54886 * 102.77692 * 37.88798 * 23 22 21 25 25 C 1.53869 * 110.03753 * 120.68784 * 21 12 10 26 26 C 1.53071 * 108.42721 * 292.47006 * 8 7 5 27 27 C 1.50176 * 109.88350 * 48.91695 * 26 8 7 28 28 O 1.21279 * 118.24547 * 162.38043 * 27 26 8 29 29 N 1.33353 * 123.50787 * 342.38165 * 27 26 8 30 30 H 1.09004 * 109.46685 * 299.99269 * 1 2 3 31 31 H 1.08993 * 109.47078 * 59.99807 * 1 2 3 32 32 H 1.09002 * 109.46904 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46965 * 240.00045 * 2 1 3 34 34 H 1.08994 * 109.47328 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47147 * 300.00735 * 3 2 1 36 36 H 1.09004 * 109.46540 * 60.00642 * 3 2 1 37 37 H 1.09005 * 109.47510 * 54.99327 * 4 2 1 38 38 H 1.09007 * 109.46901 * 294.99955 * 4 2 1 39 39 H 1.08999 * 109.60042 * 51.30906 * 7 5 4 40 40 H 1.08998 * 109.60564 * 290.82356 * 7 5 4 41 41 H 0.96998 * 119.99953 * 0.02562 * 16 15 13 42 42 H 1.09005 * 110.01492 * 359.29143 * 21 12 10 43 43 H 1.09001 * 110.48759 * 335.77733 * 22 21 12 44 44 H 1.09000 * 110.48734 * 98.42693 * 22 21 12 45 45 H 1.08993 * 110.72022 * 279.57049 * 23 22 21 46 46 H 1.09001 * 110.91903 * 156.29438 * 23 22 21 47 47 H 1.09005 * 110.48209 * 203.40145 * 24 23 22 48 48 H 1.09005 * 110.60079 * 80.81829 * 24 23 22 49 49 H 1.09000 * 110.03543 * 238.57562 * 25 21 12 50 50 H 1.09003 * 110.02951 * 359.94694 * 25 21 12 51 51 H 1.08997 * 109.40156 * 169.02891 * 26 8 7 52 52 H 1.08995 * 109.40205 * 288.77488 * 26 8 7 53 53 H 0.97005 * 117.94623 * 182.24993 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.8312 1.1878 6 1 3.9899 0.1645 1.0620 7 6 4.0807 -1.4396 2.4926 8 6 5.5736 -1.7507 2.3328 9 1 5.9879 -2.0636 3.2911 10 6 6.2982 -0.5231 1.8436 11 8 6.5560 -0.4006 0.6647 12 7 6.6596 0.4385 2.7159 13 6 6.3018 0.3367 4.0355 14 1 5.7471 1.1341 4.5077 15 6 6.6527 -0.7924 4.7653 16 7 5.9699 -1.1188 5.8397 17 14 8.0951 -1.8464 4.2194 18 1 8.2562 -2.9881 5.1554 19 1 9.3342 -1.0279 4.2192 20 1 7.8416 -2.3612 2.8497 21 6 7.4348 1.5927 2.2542 22 6 8.7595 1.6876 3.0390 23 6 8.9789 3.2098 3.2295 24 6 7.5434 3.7339 3.4817 25 6 6.6621 2.8933 2.5351 26 6 5.7259 -2.8803 1.3111 27 6 4.9206 -2.5695 0.0822 28 8 5.1732 -3.1750 -0.9378 29 7 3.9427 -1.6634 0.0525 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6768 1.9562 0.8901 37 1 1.6054 -1.7199 1.2951 38 1 1.7517 -0.1585 2.1370 39 1 3.5364 -2.3592 2.7075 40 1 3.9402 -0.7298 3.3077 41 1 5.2207 -0.5717 6.1230 42 1 7.6387 1.5025 1.1872 43 1 8.6669 1.1919 4.0053 44 1 9.5763 1.2529 2.4628 45 1 9.3997 3.6546 2.3278 46 1 9.6186 3.4062 4.0900 47 1 7.4737 4.7919 3.2288 48 1 7.2523 3.5707 4.5194 49 1 6.4915 3.4347 1.6045 50 1 5.7098 2.6657 3.0141 51 1 6.7763 -2.9833 1.0390 52 1 5.3733 -3.8142 1.7487 53 1 3.4522 -1.5509 -0.7768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357615708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:35 Heat of formation + Delta-G solvation = -108.536501 kcal Electronic energy + Delta-G solvation = -32754.402435 eV Core-core repulsion = 28817.189732 eV Total energy + Delta-G solvation = -3937.212703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.14402 -40.50747 -38.69729 -38.33387 -36.31353 -35.88690 -33.89890 -33.57620 -31.35242 -29.56341 -28.97392 -28.05369 -27.63783 -26.17021 -25.13472 -23.36705 -22.09751 -21.48814 -21.16963 -20.74966 -20.17821 -18.79247 -18.26853 -17.74214 -17.17891 -16.90375 -16.69325 -16.31094 -16.01560 -15.75358 -15.51031 -15.35889 -15.20270 -14.87767 -14.64767 -14.43082 -14.26853 -14.06382 -13.88719 -13.42992 -13.15133 -13.03789 -12.88402 -12.79333 -12.63061 -12.55761 -12.49752 -12.20154 -12.11403 -11.97769 -11.94522 -11.84898 -11.74173 -11.63138 -11.56103 -11.41464 -11.41073 -11.32512 -10.86331 -10.62546 -10.30268 -9.99396 -9.57539 -8.68512 -6.22256 1.31624 1.44848 1.59356 1.68120 1.91399 2.25391 2.37961 2.68127 2.94752 3.57410 3.60256 3.72272 3.78153 3.80312 3.84114 3.98237 4.03347 4.10629 4.16824 4.30531 4.38386 4.49160 4.52975 4.57987 4.65730 4.70489 4.72904 4.74749 4.75565 4.80038 4.82868 4.86270 4.90306 4.98906 5.00836 5.03026 5.08410 5.09254 5.15905 5.17162 5.19877 5.32068 5.35028 5.43346 5.45800 5.46269 5.53642 5.85489 5.87917 6.12441 6.38162 6.62839 6.80834 7.24297 7.50798 7.92131 8.56063 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.005442 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.294911 B = 5144.088592 C = 6106.700696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.116 4.116 5 C 0.145 3.855 6 H 0.057 0.943 7 C -0.102 4.102 8 C -0.107 4.107 9 H 0.102 0.898 10 C 0.494 3.506 11 O -0.612 6.612 12 N -0.463 5.463 13 C -0.400 4.400 14 H 0.066 0.934 15 C 0.024 3.976 16 N -0.884 5.884 17 Si 1.029 2.971 18 H -0.278 1.278 19 H -0.275 1.275 20 H -0.266 1.266 21 C 0.117 3.883 22 C -0.134 4.134 23 C -0.111 4.111 24 C -0.110 4.110 25 C -0.117 4.117 26 C -0.123 4.123 27 C 0.541 3.459 28 O -0.612 6.612 29 N -0.693 5.693 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.275 0.725 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.055 0.945 49 H 0.065 0.935 50 H 0.053 0.947 51 H 0.081 0.919 52 H 0.126 0.874 53 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.965 5.404 -3.329 9.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.154 4.154 5 C 0.040 3.960 6 H 0.074 0.926 7 C -0.140 4.140 8 C -0.128 4.128 9 H 0.120 0.880 10 C 0.284 3.716 11 O -0.497 6.497 12 N -0.183 5.183 13 C -0.528 4.528 14 H 0.084 0.916 15 C -0.184 4.184 16 N -0.517 5.517 17 Si 0.854 3.146 18 H -0.203 1.203 19 H -0.201 1.201 20 H -0.192 1.192 21 C 0.013 3.987 22 C -0.172 4.172 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.155 4.155 26 C -0.163 4.163 27 C 0.330 3.670 28 O -0.496 6.496 29 N -0.344 5.344 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.101 0.899 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.072 0.928 51 H 0.100 0.900 52 H 0.144 0.856 53 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -5.744 3.844 -3.764 7.870 hybrid contribution -0.597 1.382 -0.309 1.536 sum -6.341 5.226 -4.073 9.171 Atomic orbital electron populations 1.21776 0.93363 1.02255 1.02347 1.21111 0.97105 0.95917 0.97406 1.21880 1.00048 0.96332 1.02305 1.22002 0.91603 1.02256 0.99546 1.21035 0.96511 0.93242 0.85163 0.92550 1.21681 0.92100 1.03046 0.97177 1.21509 0.98445 0.92930 0.99924 0.88037 1.20799 0.79639 0.86068 0.85113 1.90561 1.59918 1.81221 1.18045 1.43852 1.47122 1.19438 1.07926 1.19798 1.38681 1.07963 0.86348 0.91650 1.26703 1.00331 0.97211 0.94124 1.70890 1.18299 1.36988 1.25488 0.84408 0.76235 0.76999 0.76980 1.20316 1.20094 1.19175 1.21886 0.91679 0.87542 0.97569 1.22714 0.95740 0.98319 1.00433 1.22402 0.97033 0.93300 1.02112 1.22219 0.94535 0.99170 0.98803 1.22270 0.98919 0.94825 0.99482 1.21607 1.00928 1.00327 0.93421 1.19966 0.79211 0.78100 0.89746 1.90635 1.69509 1.53598 1.35880 1.45365 1.35145 1.38051 1.15794 0.92078 0.92067 0.92137 0.91943 0.94623 0.91876 0.92104 0.90047 0.89472 0.88955 0.89295 0.91468 0.91787 0.91853 0.92903 0.90340 0.90594 0.89886 0.92655 0.91625 0.92803 0.90035 0.85617 0.76614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.19 71.98 0.66 -1.58 16 2 C -0.10 -1.97 2.84 -10.79 -0.03 -2.00 16 3 C -0.15 -3.25 8.95 71.98 0.64 -2.61 16 4 C -0.12 -2.62 4.33 30.59 0.13 -2.49 16 5 C 0.14 4.46 2.28 45.11 0.10 4.56 16 6 H 0.06 2.03 5.53 -2.39 -0.01 2.01 16 7 C -0.10 -3.43 4.82 30.68 0.15 -3.29 16 8 C -0.11 -4.29 1.29 -11.40 -0.01 -4.31 16 9 H 0.10 4.34 2.98 -2.39 -0.01 4.34 16 10 C 0.49 22.08 3.94 87.66 0.35 22.43 16 11 O -0.61 -30.25 14.14 -3.06 -0.04 -30.29 16 12 N -0.46 -20.17 1.79 -609.38 -1.09 -21.26 16 13 C -0.40 -18.18 6.39 84.04 0.54 -17.64 16 14 H 0.07 3.20 7.40 -2.91 -0.02 3.18 16 15 C 0.02 1.13 3.90 84.93 0.33 1.46 16 16 N -0.88 -43.57 13.69 21.66 0.30 -43.27 16 17 Si 1.03 45.13 24.93 68.60 1.71 46.84 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 19 H -0.28 -11.88 6.92 99.48 0.69 -11.19 16 20 H -0.27 -11.51 4.84 99.48 0.48 -11.03 16 21 C 0.12 4.62 3.29 45.71 0.15 4.77 16 22 C -0.13 -4.88 6.37 31.70 0.20 -4.68 16 23 C -0.11 -3.10 6.91 31.91 0.22 -2.88 16 24 C -0.11 -3.11 6.83 31.67 0.22 -2.89 16 25 C -0.12 -3.93 6.27 31.31 0.20 -3.73 16 26 C -0.12 -4.77 4.88 29.71 0.14 -4.62 16 27 C 0.54 21.78 6.40 87.71 0.56 22.34 16 28 O -0.61 -28.46 17.78 -3.03 -0.05 -28.51 16 29 N -0.69 -23.40 4.96 -446.66 -2.22 -25.62 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.33 6.46 -2.39 -0.02 1.32 16 34 H 0.03 0.96 6.46 -2.39 -0.02 0.94 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.25 8.14 -2.38 -0.02 1.24 16 37 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.09 2.69 8.11 -2.39 -0.02 2.67 16 40 H 0.09 3.21 7.37 -2.39 -0.02 3.20 16 41 H 0.27 13.37 8.73 -92.71 -0.81 12.56 16 42 H 0.06 2.73 6.95 -2.38 -0.02 2.71 16 43 H 0.06 2.61 5.93 -2.39 -0.01 2.60 16 44 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.08 1.89 8.14 -2.38 -0.02 1.88 16 48 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 49 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.05 1.99 6.93 -2.39 -0.02 1.98 16 51 H 0.08 3.45 7.53 -2.39 -0.02 3.43 16 52 H 0.13 4.04 8.14 -2.39 -0.02 4.02 16 53 H 0.40 12.29 6.90 -92.70 -0.64 11.65 16 Total: -1.00 -59.67 386.31 3.13 -56.53 By element: Atomic # 1 Polarization: 42.75 SS G_CDS: -0.02 Total: 42.73 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 4.55 Total: 2.85 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -3.01 Total: -90.15 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -0.10 Total: -58.81 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.71 Total: 46.84 kcal Total: -59.67 3.13 -56.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357615708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.004 kcal (2) G-P(sol) polarization free energy of solvation -59.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds