Wall clock time and date at job start Tue Mar 31 2020 19:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 5 5 C 1.50700 * 109.47008 * 59.99579 * 4 2 1 6 6 H 1.07997 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99653 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00420 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47037 * 60.00067 * 9 7 5 11 11 H 1.48495 * 109.46817 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46854 * 299.99817 * 9 7 5 13 13 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 14 14 N 1.46498 * 109.47059 * 299.99645 * 13 2 1 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 2 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 H 1.08998 * 109.49225 * 300.06971 * 17 15 14 19 19 C 1.53039 * 109.49646 * 60.16195 * 17 15 14 20 20 C 1.53034 * 109.54192 * 181.31886 * 19 17 15 21 21 C 1.53192 * 109.31099 * 298.63861 * 20 19 17 22 22 N 1.46928 * 108.77836 * 54.63440 * 21 20 19 23 23 C 1.34773 * 120.63236 * 126.36941 * 22 21 20 24 24 O 1.21290 * 119.99596 * 180.02562 * 23 22 21 25 25 C 1.50697 * 120.00202 * 0.02562 * 23 22 21 26 26 C 1.52995 * 117.50025 * 248.74801 * 25 23 22 27 27 C 1.52994 * 117.49757 * 180.08594 * 25 23 22 28 28 C 1.46934 * 118.73283 * 306.38939 * 22 21 20 29 29 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 30 30 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 31 31 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 34 34 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 35 35 H 1.08990 * 109.47021 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.46620 * 300.00017 * 4 2 1 37 37 H 0.97000 * 120.00497 * 180.02562 * 8 7 5 38 38 H 1.09004 * 109.47066 * 179.97438 * 13 2 1 39 39 H 1.08994 * 109.46974 * 60.00060 * 13 2 1 40 40 H 0.97001 * 120.00384 * 0.02562 * 14 13 2 41 41 H 1.09003 * 109.46302 * 301.34175 * 19 17 15 42 42 H 1.09007 * 109.46064 * 61.29926 * 19 17 15 43 43 H 1.09000 * 109.50153 * 178.68277 * 20 19 17 44 44 H 1.09002 * 109.49510 * 58.58427 * 20 19 17 45 45 H 1.09001 * 109.58531 * 294.84159 * 21 20 19 46 46 H 1.09004 * 109.59036 * 174.41780 * 21 20 19 47 47 H 1.09002 * 115.54727 * 34.42057 * 25 23 22 48 48 H 1.09004 * 117.49777 * 359.97438 * 26 25 23 49 49 H 1.08993 * 117.50387 * 145.01922 * 26 25 23 50 50 H 1.09002 * 117.50050 * 214.97937 * 27 25 23 51 51 H 1.09000 * 117.50387 * 359.97438 * 27 25 23 52 52 H 1.08998 * 109.58625 * 293.82113 * 28 22 21 53 53 H 1.09004 * 109.70081 * 173.46649 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 1.7439 1.7995 -5.2567 11 1 1.7448 -0.3000 -6.4697 12 1 -0.2362 0.3994 -5.2577 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8728 -0.4943 3.6694 16 8 2.5702 -1.4804 3.7807 17 6 1.3655 0.2124 4.9000 18 1 1.7272 1.2406 4.9040 19 6 -0.1649 0.2086 4.8967 20 6 -0.6813 0.9546 6.1290 21 6 -0.1987 0.2381 7.3941 22 7 1.2637 0.1090 7.3358 23 6 2.0332 0.5525 8.3495 24 8 3.2394 0.4404 8.2890 25 6 1.3951 1.1875 9.5579 26 6 1.6180 2.6864 9.7690 27 6 2.3226 1.6725 10.6738 28 6 1.8712 -0.5126 6.1511 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9564 0.8899 35 1 3.1300 -0.7208 -1.2496 36 1 1.6767 -1.7489 -1.2493 37 1 2.8622 -1.8818 -4.7337 38 1 3.1301 -0.7216 1.2490 39 1 1.6768 -1.7489 1.2492 40 1 0.9939 0.7579 2.3564 41 1 -0.5274 0.7023 3.9950 42 1 -0.5256 -0.8199 4.9173 43 1 -1.7711 0.9718 6.1138 44 1 -0.3008 1.9761 6.1218 45 1 -0.6512 -0.7520 7.4484 46 1 -0.4794 0.8190 8.2727 47 1 0.4287 0.7764 9.8499 48 1 2.2267 3.2131 9.0339 49 1 0.7986 3.2614 10.2000 50 1 1.9664 1.5809 11.6998 51 1 3.3945 1.5319 10.5341 52 1 1.5876 -1.5639 6.1040 53 1 2.9566 -0.4291 6.2081 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359767609.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:39 Heat of formation + Delta-G solvation = -91.756716 kcal Electronic energy + Delta-G solvation = -29701.704729 eV Core-core repulsion = 25765.219652 eV Total energy + Delta-G solvation = -3936.485077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.74111 -40.83159 -38.96541 -38.19586 -37.00027 -35.32218 -34.33563 -33.60708 -32.29595 -29.15625 -28.03450 -27.96242 -26.99996 -25.71800 -24.72918 -23.77965 -23.30326 -22.33663 -21.10631 -19.87670 -19.72262 -18.75439 -18.37123 -17.92262 -17.01207 -16.89299 -16.58275 -16.44035 -16.27756 -15.69023 -15.48773 -15.25541 -15.15080 -14.84182 -14.69946 -14.40211 -14.29413 -14.03422 -13.93947 -13.74095 -13.63801 -13.43658 -12.83963 -12.76575 -12.59629 -12.56190 -12.43529 -12.33049 -12.22890 -12.11760 -12.02499 -11.95524 -11.67302 -11.54064 -11.50704 -11.37927 -11.14834 -10.92782 -10.89239 -10.68541 -10.51007 -10.09970 -9.74147 -8.13945 -6.22194 1.41098 1.42544 1.44798 1.51994 1.57397 1.75493 2.29726 2.45338 2.91760 3.20230 3.40244 3.55977 3.73966 3.78701 3.84650 3.96449 3.98755 4.06574 4.07406 4.10833 4.19672 4.21823 4.24933 4.51362 4.61757 4.68225 4.71049 4.74024 4.76415 4.78535 4.79878 4.89762 4.93673 4.95861 5.04874 5.08767 5.09559 5.12155 5.12782 5.24325 5.37055 5.38550 5.45114 5.46076 5.50033 5.53591 5.56678 5.80021 5.89465 6.29424 6.35081 6.54208 6.92983 7.09579 7.22191 7.45629 8.98261 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.028479 B = 0.001978 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.957999 B =14152.559226 C =14390.424614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.293 1.293 12 H -0.265 1.265 13 C 0.141 3.859 14 N -0.703 5.703 15 C 0.513 3.487 16 O -0.591 6.591 17 C -0.106 4.106 18 H 0.112 0.888 19 C -0.112 4.112 20 C -0.125 4.125 21 C 0.095 3.905 22 N -0.604 5.604 23 C 0.532 3.468 24 O -0.595 6.595 25 C -0.196 4.196 26 C -0.135 4.135 27 C -0.159 4.159 28 C 0.135 3.865 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.033 0.967 33 H 0.057 0.943 34 H 0.071 0.929 35 H -0.018 1.018 36 H -0.014 1.014 37 H 0.259 0.741 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.414 0.586 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.112 0.888 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.159 0.841 48 H 0.083 0.917 49 H 0.139 0.861 50 H 0.129 0.871 51 H 0.078 0.922 52 H 0.067 0.933 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.593 11.457 28.949 33.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.219 1.219 12 H -0.189 1.189 13 C 0.016 3.984 14 N -0.356 5.356 15 C 0.300 3.700 16 O -0.471 6.471 17 C -0.128 4.128 18 H 0.129 0.871 19 C -0.149 4.149 20 C -0.163 4.163 21 C -0.025 4.025 22 N -0.335 5.335 23 C 0.322 3.678 24 O -0.476 6.476 25 C -0.217 4.217 26 C -0.173 4.173 27 C -0.196 4.196 28 C 0.011 3.989 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.001 0.999 36 H 0.004 0.996 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.253 0.747 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.130 0.870 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.136 0.864 47 H 0.176 0.824 48 H 0.102 0.898 49 H 0.157 0.843 50 H 0.147 0.853 51 H 0.096 0.904 52 H 0.085 0.915 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.421 10.596 28.849 33.149 hybrid contribution 0.592 -0.313 -1.677 1.806 sum -11.830 10.282 27.172 31.369 Atomic orbital electron populations 1.21692 0.93184 1.01074 1.01835 1.20707 0.97003 0.96156 0.92591 1.21705 0.99770 0.94730 1.01771 1.18973 0.94121 0.94244 0.92488 1.21563 1.30486 1.12115 0.90993 0.90759 1.25990 0.95698 0.95899 1.02848 1.70122 1.38739 1.25021 1.24130 0.85571 0.79024 0.78680 0.78186 1.19176 1.21862 1.18948 1.21211 0.97581 0.95489 0.84075 1.45933 1.53057 1.31961 1.04606 1.21046 0.79431 0.84018 0.85521 1.90708 1.40119 1.28781 1.87498 1.21585 0.99853 1.00900 0.90484 0.87051 1.21618 0.89734 1.02524 1.01064 1.21920 1.02935 0.99398 0.92011 1.22216 0.76820 1.02585 1.00922 1.48133 1.08764 1.59280 1.17343 1.20514 0.86090 0.76976 0.84182 1.90693 1.16978 1.58841 1.81129 1.22289 1.03391 1.00184 0.95816 1.23050 1.03676 0.88662 1.01884 1.23037 0.98114 1.02373 0.96125 1.21068 0.98216 0.96196 0.83380 0.90799 0.92510 0.94368 0.94777 0.92410 0.91017 0.99915 0.99602 0.93218 0.94095 0.93505 0.74721 0.89112 0.91277 0.87022 0.90482 0.90138 0.86399 0.82388 0.89833 0.84342 0.85280 0.90371 0.91487 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.83 8.05 71.99 0.58 -3.25 16 2 C -0.06 -2.37 0.54 -52.18 -0.03 -2.40 16 3 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 4 C 0.04 2.00 4.04 29.85 0.12 2.12 16 5 C -0.51 -27.31 7.65 25.60 0.20 -27.12 16 6 H 0.07 3.65 5.68 -2.91 -0.02 3.64 16 7 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 8 N -0.94 -57.31 13.29 21.45 0.28 -57.02 16 9 Si 0.96 43.34 29.54 68.60 2.03 45.36 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 13 C 0.14 5.00 4.56 86.38 0.39 5.39 16 14 N -0.70 -18.57 4.85 -463.07 -2.24 -20.81 16 15 C 0.51 14.57 7.16 87.66 0.63 15.20 16 16 O -0.59 -22.90 15.92 -3.04 -0.05 -22.95 16 17 C -0.11 -2.06 2.68 -11.46 -0.03 -2.09 16 18 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 19 C -0.11 -1.30 5.08 30.62 0.16 -1.14 16 20 C -0.12 -0.73 6.08 30.67 0.19 -0.55 16 21 C 0.10 0.73 6.30 86.36 0.54 1.28 16 22 N -0.60 -10.58 2.97 -818.88 -2.43 -13.01 16 23 C 0.53 11.35 7.48 87.66 0.66 12.01 16 24 O -0.60 -19.15 15.67 -3.06 -0.05 -19.19 16 25 C -0.20 -2.27 4.96 -11.54 -0.06 -2.33 16 26 C -0.14 -1.19 10.24 30.62 0.31 -0.87 16 27 C -0.16 -1.89 10.05 30.62 0.31 -1.58 16 28 C 0.14 3.22 5.06 86.36 0.44 3.65 16 29 H 0.07 1.66 6.86 -2.39 -0.02 1.65 16 30 H 0.06 1.94 6.62 -2.39 -0.02 1.93 16 31 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 34 H 0.07 1.73 6.86 -2.39 -0.02 1.72 16 35 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 36 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.41 8.06 5.57 -92.71 -0.52 7.55 16 41 H 0.09 0.82 7.54 -2.39 -0.02 0.80 16 42 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.12 0.27 5.68 -2.38 -0.01 0.25 16 47 H 0.16 0.73 6.82 -2.39 -0.02 0.72 16 48 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 49 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.13 0.82 8.14 -2.39 -0.02 0.81 16 51 H 0.08 1.42 7.67 -2.39 -0.02 1.40 16 52 H 0.07 1.72 7.95 -2.39 -0.02 1.70 16 53 H 0.06 1.93 7.01 -2.38 -0.02 1.92 16 Total: -1.00 -80.53 410.16 3.36 -77.18 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.38 Total: 15.55 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 5.44 Total: -5.10 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -4.39 Total: -90.84 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.10 Total: -42.14 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -80.53 3.36 -77.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359767609.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.581 kcal (2) G-P(sol) polarization free energy of solvation -80.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds