Wall clock time and date at job start Tue Mar 31 2020 19:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47372 * 2 1 4 4 C 1.53001 * 109.47138 * 240.00404 * 2 1 3 5 5 C 1.50699 * 109.47240 * 59.99719 * 4 2 1 6 6 H 1.07997 * 119.99965 * 0.02562 * 5 4 2 7 7 C 1.37883 * 120.00460 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00301 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99441 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46632 * 90.00181 * 9 7 5 11 11 H 1.48496 * 109.47096 * 209.99990 * 9 7 5 12 12 H 1.48502 * 109.47428 * 330.00541 * 9 7 5 13 13 C 1.52994 * 109.47053 * 120.00227 * 2 1 3 14 14 N 1.46492 * 109.47266 * 299.99877 * 13 2 1 15 15 C 1.34776 * 120.00086 * 180.02562 * 14 13 2 16 16 O 1.21282 * 120.00274 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00181 * 180.02562 * 15 14 13 18 18 H 1.09000 * 109.49910 * 60.06007 * 17 15 14 19 19 C 1.53038 * 109.49914 * 299.99782 * 17 15 14 20 20 C 1.53035 * 109.54175 * 178.68279 * 19 17 15 21 21 C 1.53191 * 109.31327 * 61.36680 * 20 19 17 22 22 N 1.46926 * 108.89109 * 305.29292 * 21 20 19 23 23 C 1.34778 * 120.63336 * 233.68039 * 22 21 20 24 24 O 1.21273 * 120.00022 * 180.02562 * 23 22 21 25 25 C 1.50706 * 119.99581 * 0.02562 * 23 22 21 26 26 C 1.53001 * 117.49617 * 248.74453 * 25 23 22 27 27 C 1.52998 * 117.49369 * 180.08940 * 25 23 22 28 28 C 1.47207 * 118.55531 * 53.54119 * 22 21 20 29 29 H 1.08996 * 109.47043 * 299.99747 * 1 2 3 30 30 H 1.09003 * 109.46745 * 59.99734 * 1 2 3 31 31 H 1.08997 * 109.47135 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47354 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47435 * 300.00647 * 3 2 1 34 34 H 1.09006 * 109.46884 * 60.00258 * 3 2 1 35 35 H 1.08992 * 109.47646 * 180.02562 * 4 2 1 36 36 H 1.09009 * 109.46943 * 300.00284 * 4 2 1 37 37 H 0.96996 * 119.99895 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.46809 * 179.97438 * 13 2 1 39 39 H 1.09005 * 109.47129 * 60.00241 * 13 2 1 40 40 H 0.96999 * 120.00102 * 359.97438 * 14 13 2 41 41 H 1.09003 * 109.46001 * 58.65612 * 19 17 15 42 42 H 1.09004 * 109.46331 * 298.70671 * 19 17 15 43 43 H 1.09003 * 109.49576 * 301.41349 * 20 19 17 44 44 H 1.09000 * 109.52700 * 181.33397 * 20 19 17 45 45 H 1.09002 * 109.58786 * 65.15336 * 21 20 19 46 46 H 1.08996 * 109.58870 * 185.43616 * 21 20 19 47 47 H 1.08999 * 115.55287 * 34.41336 * 25 23 22 48 48 H 1.09008 * 117.49649 * 0.02562 * 26 25 23 49 49 H 1.08997 * 117.49980 * 145.02365 * 26 25 23 50 50 H 1.09001 * 117.49584 * 214.98027 * 27 25 23 51 51 H 1.09002 * 117.50282 * 359.97039 * 27 25 23 52 52 H 1.08996 * 109.53610 * 186.67231 * 28 22 21 53 53 H 1.09002 * 109.68003 * 66.36699 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8703 -0.4820 -3.7321 8 7 1.4323 0.1383 -4.8058 9 14 2.9443 -2.0007 -3.9035 10 1 2.0857 -3.2116 -3.9484 11 1 3.7357 -1.9084 -5.1566 12 1 3.8651 -2.0896 -2.7418 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0308 2.4453 15 6 1.8777 -0.4910 3.6694 16 8 2.5750 -1.4771 3.7807 17 6 1.3750 0.2190 4.8999 18 1 0.2850 0.2175 4.9010 19 6 1.8837 1.6624 4.9006 20 6 1.3468 2.3938 6.1329 21 6 1.8607 1.6995 7.3981 22 7 1.5000 0.2764 7.3397 23 6 0.8248 -0.3030 8.3521 24 8 0.5333 -1.4786 8.2921 25 6 0.4322 0.5102 9.5587 26 6 1.1322 0.1939 10.8819 27 6 -0.3309 -0.2056 10.6750 28 6 1.8892 -0.5000 6.1511 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 3.1300 -0.7216 -1.2492 36 1 1.6766 -1.7489 -1.2494 37 1 1.6666 -0.1930 -5.6868 38 1 3.1300 -0.7216 1.2489 39 1 1.6767 -1.7490 1.2491 40 1 0.9944 0.7581 2.3564 41 1 1.5397 2.1691 3.9989 42 1 2.9735 1.6633 4.9239 43 1 0.2570 2.3718 6.1229 44 1 1.6899 3.4283 6.1208 45 1 2.9446 1.7997 7.4552 46 1 1.4048 2.1563 8.2764 47 1 0.1760 1.5510 9.3611 48 1 1.8770 -0.6020 10.8796 49 1 1.3361 1.0266 11.5550 50 1 -1.0890 0.3644 11.2120 51 1 -0.5493 -1.2645 10.5365 52 1 1.4501 -1.4960 6.2066 53 1 2.9752 -0.5814 6.1053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359767610.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:42 Heat of formation + Delta-G solvation = -88.487537 kcal Electronic energy + Delta-G solvation = -29697.590092 eV Core-core repulsion = 25761.246778 eV Total energy + Delta-G solvation = -3936.343315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.72996 -40.83350 -39.00412 -38.20666 -37.00447 -35.29241 -34.33926 -33.66112 -32.29892 -29.76824 -28.04516 -27.99127 -26.98958 -25.63341 -24.45444 -23.71557 -23.29872 -22.29040 -21.07730 -19.88098 -19.71652 -18.91901 -18.69866 -17.92061 -17.09265 -16.90543 -16.61314 -16.30714 -16.04732 -15.68453 -15.52631 -15.33654 -15.19250 -14.99529 -14.82094 -14.46777 -14.22873 -14.15916 -14.00443 -13.80345 -13.65286 -13.42988 -12.94444 -12.86474 -12.62313 -12.56345 -12.45254 -12.31716 -12.17724 -12.12826 -11.96838 -11.78719 -11.67512 -11.52786 -11.50476 -11.38698 -11.28417 -10.95605 -10.92549 -10.71842 -10.71228 -10.08457 -9.74511 -8.23644 -6.23411 1.34137 1.37156 1.40788 1.46744 1.57999 1.75654 2.30478 2.37481 2.91005 3.11726 3.40178 3.56099 3.74213 3.78324 3.83656 3.91547 3.96976 4.04675 4.06019 4.08068 4.15325 4.19935 4.24149 4.52022 4.61287 4.63544 4.69460 4.73555 4.74950 4.77476 4.78787 4.90641 4.93269 4.94311 5.01027 5.04342 5.08560 5.09261 5.11950 5.23250 5.28751 5.34884 5.36857 5.39917 5.44118 5.46307 5.55262 5.69004 5.75804 6.34673 6.36731 6.53828 6.83366 7.09164 7.21659 7.39255 8.91717 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.028998 B = 0.002028 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.347999 B =13801.383063 C =14182.521527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.123 4.123 4 C -0.004 4.004 5 C -0.501 4.501 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.949 5.949 9 Si 0.932 3.068 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.253 1.253 13 C 0.137 3.863 14 N -0.705 5.705 15 C 0.515 3.485 16 O -0.588 6.588 17 C -0.108 4.108 18 H 0.111 0.889 19 C -0.111 4.111 20 C -0.127 4.127 21 C 0.096 3.904 22 N -0.604 5.604 23 C 0.532 3.468 24 O -0.595 6.595 25 C -0.196 4.196 26 C -0.140 4.140 27 C -0.157 4.157 28 C 0.136 3.864 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.015 0.985 36 H 0.010 0.990 37 H 0.262 0.738 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.413 0.587 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.117 0.883 47 H 0.161 0.839 48 H 0.081 0.919 49 H 0.138 0.862 50 H 0.130 0.870 51 H 0.078 0.922 52 H 0.061 0.939 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.298 10.461 32.789 34.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.058 4.058 3 C -0.180 4.180 4 C -0.042 4.042 5 C -0.539 4.539 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.591 5.591 9 Si 0.758 3.242 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.177 1.177 13 C 0.013 3.987 14 N -0.358 5.358 15 C 0.302 3.698 16 O -0.468 6.468 17 C -0.130 4.130 18 H 0.129 0.871 19 C -0.149 4.149 20 C -0.165 4.165 21 C -0.025 4.025 22 N -0.336 5.336 23 C 0.323 3.677 24 O -0.476 6.476 25 C -0.217 4.217 26 C -0.177 4.177 27 C -0.194 4.194 28 C 0.012 3.988 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.033 0.967 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.252 0.748 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.129 0.871 45 H 0.099 0.901 46 H 0.135 0.865 47 H 0.178 0.822 48 H 0.100 0.900 49 H 0.156 0.844 50 H 0.148 0.852 51 H 0.097 0.903 52 H 0.080 0.920 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.937 9.163 32.634 33.909 hybrid contribution 0.269 -1.030 -1.411 1.767 sum -0.668 8.133 31.224 32.272 Atomic orbital electron populations 1.21716 0.93989 1.01132 1.01369 1.20554 0.96406 0.96354 0.92513 1.21697 1.00293 0.94574 1.01436 1.19574 0.95952 0.95394 0.93301 1.21361 1.30237 1.12294 0.89990 0.92757 1.25817 0.97456 0.99807 0.95984 1.70029 1.48080 1.42569 0.98403 0.85926 0.79914 0.80483 0.77910 1.19930 1.21386 1.17669 1.21279 0.98327 0.95474 0.83593 1.45945 1.53032 1.32091 1.04708 1.20952 0.79533 0.83891 0.85414 1.90704 1.40212 1.28460 1.87471 1.21588 1.02927 0.97797 0.90678 0.87136 1.21608 1.01564 0.90826 1.00938 1.21942 1.01881 1.00480 0.92188 1.22197 1.01725 0.77865 1.00717 1.48201 1.55518 1.12342 1.17524 1.20479 0.76174 0.86869 0.84187 1.90687 1.56935 1.19039 1.80935 1.22316 1.09672 1.01738 0.87930 1.23050 0.95319 1.04121 0.95197 1.23034 0.96082 1.01108 0.99207 1.21126 0.99732 0.94712 0.83225 0.91160 0.93451 0.93985 0.93610 0.93547 0.90935 0.96716 0.97183 0.92864 0.92595 0.93128 0.74823 0.89227 0.91160 0.90542 0.87088 0.90132 0.86507 0.82196 0.90007 0.84434 0.85208 0.90314 0.91998 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 2 C -0.06 -2.00 0.54 -52.18 -0.03 -2.03 16 3 C -0.12 -3.86 8.05 71.98 0.58 -3.28 16 4 C 0.00 -0.19 3.11 29.85 0.09 -0.10 16 5 C -0.50 -26.98 8.20 25.60 0.21 -26.77 16 6 H 0.05 3.13 5.92 -2.91 -0.02 3.11 16 7 C 0.01 0.33 5.47 84.66 0.46 0.79 16 8 N -0.95 -58.26 13.96 21.45 0.30 -57.96 16 9 Si 0.93 44.61 27.47 68.60 1.88 46.49 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 13 C 0.14 4.33 4.56 86.38 0.39 4.72 16 14 N -0.71 -17.10 4.85 -463.08 -2.24 -19.34 16 15 C 0.52 13.54 7.16 87.66 0.63 14.16 16 16 O -0.59 -21.12 15.92 -3.04 -0.05 -21.17 16 17 C -0.11 -1.97 2.68 -11.46 -0.03 -2.00 16 18 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 19 C -0.11 -1.21 5.07 30.62 0.16 -1.06 16 20 C -0.13 -0.70 6.08 30.67 0.19 -0.51 16 21 C 0.10 0.70 6.34 86.36 0.55 1.24 16 22 N -0.60 -10.17 2.98 -818.19 -2.44 -12.61 16 23 C 0.53 11.05 7.49 87.66 0.66 11.71 16 24 O -0.59 -18.69 15.69 -3.01 -0.05 -18.73 16 25 C -0.20 -2.20 5.12 -11.54 -0.06 -2.26 16 26 C -0.14 -1.25 10.24 30.62 0.31 -0.94 16 27 C -0.16 -1.81 10.05 30.62 0.31 -1.50 16 28 C 0.14 3.06 5.08 86.31 0.44 3.50 16 29 H 0.07 1.71 6.86 -2.39 -0.02 1.70 16 30 H 0.05 1.80 6.62 -2.39 -0.02 1.78 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.72 6.62 -2.39 -0.02 1.70 16 34 H 0.07 1.65 6.86 -2.38 -0.02 1.64 16 35 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 36 H 0.01 0.45 7.57 -2.38 -0.02 0.43 16 37 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.41 7.58 5.56 -92.71 -0.52 7.06 16 41 H 0.09 0.77 7.53 -2.39 -0.02 0.75 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.12 0.22 5.51 -2.39 -0.01 0.21 16 47 H 0.16 0.64 6.57 -2.39 -0.02 0.62 16 48 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 49 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.08 1.39 7.67 -2.39 -0.02 1.37 16 52 H 0.06 1.86 7.02 -2.39 -0.02 1.84 16 53 H 0.07 1.66 7.95 -2.39 -0.02 1.64 16 Total: -1.00 -79.02 406.38 3.16 -75.86 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.33 Total: 15.28 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 5.43 Total: -7.82 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -4.39 Total: -89.91 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.10 Total: -39.90 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -79.02 3.16 -75.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359767610.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.630 kcal (2) G-P(sol) polarization free energy of solvation -79.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds