Wall clock time and date at job start Tue Mar 31 2020 19:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00641 * 2 1 4 4 H 1.09007 * 110.53228 * 27.40427 * 3 2 1 5 5 C 1.55452 * 110.48275 * 149.99914 * 3 2 1 6 6 H 1.08993 * 113.25438 * 347.31479 * 5 3 2 7 7 C 1.56112 * 104.35213 * 111.72671 * 5 3 2 8 8 H 1.09004 * 116.43365 * 203.45884 * 7 5 3 9 9 C 1.56224 * 102.67173 * 332.52078 * 7 5 3 10 10 C 1.55786 * 110.48494 * 264.79834 * 3 2 1 11 11 H 1.09004 * 115.99191 * 46.83982 * 10 3 2 12 12 C 1.55991 * 104.37293 * 175.69218 * 10 3 2 13 13 C 1.54781 * 105.14615 * 70.57579 * 12 10 3 14 14 H 1.09002 * 113.57048 * 124.23072 * 13 12 10 15 15 C 1.54241 * 108.22996 * 252.54529 * 13 12 10 16 16 N 1.46794 * 106.17103 * 75.36039 * 15 13 12 17 17 C 1.34783 * 125.50597 * 192.70140 * 16 15 13 18 18 O 1.21586 * 119.99728 * 179.69253 * 17 16 15 19 19 N 1.34777 * 119.99993 * 359.69017 * 17 16 15 20 20 C 1.46496 * 120.00012 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47487 * 180.02562 * 20 19 17 22 22 C 1.53006 * 109.46623 * 299.99762 * 21 20 19 23 23 C 1.52997 * 109.47269 * 59.99598 * 21 20 19 24 24 C 1.52997 * 109.47317 * 179.97438 * 21 20 19 25 25 C 1.50699 * 109.47078 * 179.97438 * 24 21 20 26 26 H 1.07999 * 120.00019 * 359.97438 * 25 24 21 27 27 C 1.37877 * 120.00129 * 180.02562 * 25 24 21 28 28 N 1.31513 * 119.99969 * 180.02562 * 27 25 24 29 29 Si 1.86797 * 119.99840 * 359.97438 * 27 25 24 30 30 H 1.48494 * 109.47087 * 90.00328 * 29 27 25 31 31 H 1.48500 * 109.47028 * 210.00109 * 29 27 25 32 32 H 1.48500 * 109.47023 * 330.00059 * 29 27 25 33 33 H 1.09003 * 109.47383 * 59.99562 * 1 2 3 34 34 H 1.09000 * 109.47822 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.46899 * 300.00157 * 1 2 3 36 36 H 1.08998 * 111.98442 * 293.56822 * 9 7 5 37 37 H 1.09005 * 111.98468 * 167.15836 * 9 7 5 38 38 H 1.08993 * 110.30966 * 189.49813 * 12 10 3 39 39 H 1.09002 * 110.30700 * 311.56088 * 12 10 3 40 40 H 1.08992 * 110.20106 * 316.11800 * 15 13 12 41 41 H 1.09001 * 109.98296 * 194.47716 * 15 13 12 42 42 H 0.97004 * 120.00071 * 0.02562 * 19 17 16 43 43 H 1.09001 * 109.47464 * 59.99570 * 20 19 17 44 44 H 1.09002 * 109.47021 * 299.99962 * 20 19 17 45 45 H 1.09001 * 109.47002 * 179.97438 * 22 21 20 46 46 H 1.08993 * 109.46955 * 300.00075 * 22 21 20 47 47 H 1.09000 * 109.47050 * 59.99904 * 22 21 20 48 48 H 1.09000 * 109.47140 * 300.00547 * 23 21 20 49 49 H 1.09001 * 109.47230 * 59.99691 * 23 21 20 50 50 H 1.09001 * 109.47375 * 180.02562 * 23 21 20 51 51 H 1.09002 * 109.47153 * 299.99641 * 24 21 20 52 52 H 1.08996 * 109.46952 * 59.99813 * 24 21 20 53 53 H 0.96999 * 119.99716 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3380 2.0233 0.4699 5 6 3.3837 1.2892 0.7281 6 1 3.5615 0.3730 1.2911 7 6 4.4256 1.5475 -0.4053 8 1 5.4412 1.1976 -0.2197 9 6 3.7030 0.9833 -1.6702 10 6 2.3530 1.7496 -1.4533 11 1 1.5719 1.5932 -2.1974 12 6 2.8655 3.2148 -1.2997 13 6 4.2428 3.0907 -0.6046 14 1 5.0544 3.5636 -1.1577 15 6 4.0937 3.5760 0.8519 16 7 3.3973 2.5024 1.5712 17 6 2.8533 2.6081 2.7998 18 8 2.2927 1.6525 3.3007 19 7 2.9308 3.7730 3.4732 20 6 2.3400 3.8878 4.8088 21 6 2.5653 5.3023 5.3465 22 6 4.0671 5.5839 5.4272 23 6 1.9062 6.3155 4.4085 24 6 1.9477 5.4223 6.7411 25 6 2.1703 6.8154 7.2709 26 1 2.6997 7.5424 6.6729 27 6 1.6990 7.1617 8.5195 28 7 1.8928 8.3776 8.9816 29 14 0.7839 5.9041 9.5541 30 1 1.7519 5.1598 10.3992 31 1 -0.1995 6.5992 10.4229 32 1 0.0719 4.9535 8.6626 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3635 -1.0276 -0.0005 35 1 -0.3633 0.5139 0.8900 36 1 3.5719 -0.0974 -1.6173 37 1 4.1997 1.2849 -2.5925 38 1 2.9763 3.6814 -2.2785 39 1 2.1787 3.7929 -0.6814 40 1 3.5051 4.4927 0.8848 41 1 5.0771 3.7449 1.2908 42 1 3.3778 4.5355 3.0734 43 1 2.8092 3.1657 5.4770 44 1 1.2701 3.6876 4.7512 45 1 4.2277 6.5918 5.8098 46 1 4.5366 4.8621 6.0954 47 1 4.5067 5.4985 4.4335 48 1 2.3458 6.2301 3.4147 49 1 0.8364 6.1149 4.3508 50 1 2.0672 7.3233 4.7913 51 1 0.8779 5.2219 6.6831 52 1 2.4170 4.7005 7.4095 53 1 1.5609 8.6212 9.8598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377039995.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:03 Heat of formation + Delta-G solvation = -86.004915 kcal Electronic energy + Delta-G solvation = -31038.102893 eV Core-core repulsion = 27101.867232 eV Total energy + Delta-G solvation = -3936.235660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.72665 -40.63862 -38.73572 -38.21798 -35.59300 -35.08389 -33.88220 -31.95521 -30.14650 -29.64800 -28.62627 -28.01378 -27.61336 -26.76700 -25.78697 -24.37136 -22.69862 -21.24183 -20.82457 -20.20304 -19.76774 -18.96833 -18.80983 -17.89255 -17.57530 -16.81284 -16.56641 -16.34850 -16.19376 -15.58643 -15.47429 -15.29447 -15.23207 -15.03535 -14.46810 -14.34133 -14.19010 -14.15868 -13.89578 -13.65850 -13.34856 -12.95529 -12.87090 -12.80185 -12.62918 -12.39234 -12.32683 -12.27718 -12.24271 -12.18136 -11.79465 -11.69884 -11.64451 -11.61731 -11.54647 -11.50168 -11.36652 -11.16151 -10.93055 -10.71465 -10.55377 -10.21634 -9.48422 -8.23516 -6.23332 1.34517 1.37479 1.47410 1.49832 2.05646 2.37971 2.78349 3.00450 3.11977 3.29227 3.35471 3.51855 3.87389 3.89770 3.99714 4.03158 4.08211 4.13239 4.22557 4.30738 4.33823 4.36104 4.42880 4.50423 4.59522 4.61052 4.63523 4.68191 4.72589 4.73111 4.80180 4.90996 4.92782 4.99338 5.01597 5.07099 5.11400 5.16433 5.19327 5.25074 5.27743 5.31178 5.34307 5.38443 5.44203 5.47213 5.54089 5.67006 5.74690 5.98666 6.22769 6.36944 6.83061 6.95170 7.39437 7.50654 8.91974 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020668 B = 0.002643 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.438755 B =10589.731675 C =11277.863955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.399 6.399 3 C 0.074 3.926 4 H 0.041 0.959 5 C 0.147 3.853 6 H 0.075 0.925 7 C -0.095 4.095 8 H 0.127 0.873 9 C -0.102 4.102 10 C -0.119 4.119 11 H 0.109 0.891 12 C -0.114 4.114 13 C -0.087 4.087 14 H 0.144 0.856 15 C 0.092 3.908 16 N -0.630 5.630 17 C 0.711 3.289 18 O -0.637 6.637 19 N -0.722 5.722 20 C 0.158 3.842 21 C -0.056 4.056 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.003 4.003 25 C -0.501 4.501 26 H 0.055 0.945 27 C 0.008 3.992 28 N -0.950 5.950 29 Si 0.932 3.068 30 H -0.272 1.272 31 H -0.288 1.288 32 H -0.254 1.254 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.022 0.978 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.407 0.593 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.043 0.957 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.042 0.958 50 H 0.048 0.952 51 H 0.013 0.987 52 H 0.012 0.988 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.564 -12.925 -28.641 31.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.318 6.318 3 C 0.015 3.985 4 H 0.059 0.941 5 C 0.043 3.957 6 H 0.093 0.907 7 C -0.114 4.114 8 H 0.145 0.855 9 C -0.139 4.139 10 C -0.138 4.138 11 H 0.127 0.873 12 C -0.152 4.152 13 C -0.105 4.105 14 H 0.162 0.838 15 C -0.030 4.030 16 N -0.368 5.368 17 C 0.413 3.587 18 O -0.519 6.519 19 N -0.379 5.379 20 C 0.034 3.966 21 C -0.057 4.057 22 C -0.178 4.178 23 C -0.178 4.178 24 C -0.041 4.041 25 C -0.539 4.539 26 H 0.073 0.927 27 C -0.189 4.189 28 N -0.591 5.591 29 Si 0.757 3.243 30 H -0.197 1.197 31 H -0.214 1.214 32 H -0.178 1.178 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.245 0.755 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.061 0.939 50 H 0.067 0.933 51 H 0.032 0.968 52 H 0.031 0.969 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.185 -13.633 -28.017 31.586 hybrid contribution -0.977 0.287 1.565 1.867 sum 4.208 -13.345 -26.452 29.925 Atomic orbital electron populations 1.22839 0.80279 1.03529 0.99760 1.87811 1.20663 1.28317 1.94981 1.24175 0.93854 0.83754 0.96692 0.94124 1.22954 0.94856 0.87612 0.90249 0.90695 1.24112 0.98066 0.96390 0.92797 0.85514 1.23239 0.93780 0.99583 0.97338 1.23971 0.98816 0.96155 0.94810 0.87282 1.22730 0.95410 0.95127 1.01913 1.23258 0.99213 0.94681 0.93380 0.83817 1.22393 0.97458 0.89896 0.93238 1.47745 1.59574 1.14661 1.14809 1.15724 0.79373 0.83266 0.80339 1.90895 1.51423 1.39720 1.69856 1.45039 1.61759 1.12549 1.18536 1.21133 0.96966 0.96764 0.81769 1.20550 0.96984 0.92447 0.95698 1.21679 0.93756 1.01545 1.00867 1.21674 0.99511 0.98881 0.97743 1.19559 0.95706 0.95630 0.93202 1.21344 1.34599 0.96879 1.01049 0.92708 1.25789 0.97083 0.96695 0.99294 1.70030 1.49045 1.20628 1.19435 0.85934 0.79224 0.79930 0.79219 1.19723 1.21369 1.17817 0.92508 0.88309 0.95937 0.91352 0.87749 0.88538 0.92756 0.90316 0.90053 0.75484 0.93131 0.93347 0.93285 0.93769 0.91517 0.91574 0.93874 0.93254 0.96836 0.96945 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.85 113.37 1.23 1.88 16 2 O -0.40 -9.86 10.34 -148.98 -1.54 -11.40 16 3 C 0.07 1.62 2.38 32.40 0.08 1.70 16 4 H 0.04 1.09 7.24 -2.38 -0.02 1.07 16 5 C 0.15 3.23 3.76 46.68 0.18 3.41 16 6 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 7 C -0.09 -1.14 4.97 -7.31 -0.04 -1.17 16 8 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 9 C -0.10 -1.07 6.42 33.02 0.21 -0.86 16 10 C -0.12 -1.59 4.92 -7.49 -0.04 -1.62 16 11 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 12 C -0.11 -1.16 5.76 32.24 0.19 -0.97 16 13 C -0.09 -0.75 4.30 -8.48 -0.04 -0.79 16 14 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 15 C 0.09 1.27 5.44 86.74 0.47 1.74 16 16 N -0.63 -14.58 2.61 -799.00 -2.08 -16.66 16 17 C 0.71 22.58 8.38 179.05 1.50 24.08 16 18 O -0.64 -26.51 16.67 -3.99 -0.07 -26.58 16 19 N -0.72 -20.59 4.92 -478.54 -2.35 -22.94 16 20 C 0.16 5.44 4.56 86.38 0.39 5.84 16 21 C -0.06 -2.04 0.54 -52.18 -0.03 -2.07 16 22 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 23 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 24 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 25 C -0.50 -27.26 8.20 25.60 0.21 -27.05 16 26 H 0.05 3.19 5.92 -2.91 -0.02 3.17 16 27 C 0.01 0.45 5.47 84.65 0.46 0.91 16 28 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 29 Si 0.93 44.91 27.47 68.60 1.88 46.79 16 30 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 31 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 32 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.61 16 35 H 0.02 0.53 8.11 -2.39 -0.02 0.51 16 36 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 37 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.05 0.74 7.19 -2.39 -0.02 0.73 16 40 H 0.08 1.00 7.41 -2.39 -0.02 0.98 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.41 9.30 4.90 -92.71 -0.45 8.85 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.05 1.89 6.62 -2.39 -0.02 1.87 16 46 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.07 1.73 6.86 -2.39 -0.02 1.72 16 48 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 49 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.05 1.90 6.62 -2.39 -0.02 1.89 16 51 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 52 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 53 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -74.74 396.58 2.55 -72.18 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.38 Total: 18.93 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 6.03 Total: -2.03 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -4.14 Total: -97.90 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.61 Total: -37.99 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -74.74 2.55 -72.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377039995.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.820 kcal (2) G-P(sol) polarization free energy of solvation -74.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds