Wall clock time and date at job start Tue Mar 31 2020 19:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 C 1.53002 * 109.47092 * 120.00300 * 2 1 3 5 5 C 1.50696 * 109.46919 * 299.99835 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47364 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.46883 * 120.00040 * 9 7 5 12 12 H 1.48497 * 109.46870 * 239.99850 * 9 7 5 13 13 C 1.53006 * 109.46974 * 240.00468 * 2 1 3 14 14 N 1.46497 * 109.47006 * 59.99834 * 13 2 1 15 15 C 1.34779 * 119.99798 * 180.02562 * 14 13 2 16 16 O 1.21282 * 119.99927 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00033 * 180.02562 * 15 14 13 18 18 H 1.08988 * 110.85846 * 297.65861 * 17 15 14 19 19 C 1.54629 * 110.96990 * 61.45509 * 17 15 14 20 20 C 1.51278 * 104.19853 * 142.91643 * 19 17 15 21 21 O 1.21279 * 124.94258 * 163.78303 * 20 19 17 22 22 N 1.34422 * 110.11269 * 343.74155 * 20 19 17 23 23 C 1.46503 * 124.34838 * 179.56828 * 22 20 19 24 24 C 1.54270 * 110.02837 * 57.88660 * 23 22 20 25 25 C 1.54963 * 104.15855 * 217.13339 * 24 23 22 26 26 C 1.54893 * 102.77895 * 37.89142 * 25 24 23 27 27 C 1.53873 * 110.03493 * 300.67127 * 23 22 20 28 28 C 1.46759 * 111.30300 * 359.59545 * 22 20 19 29 29 H 1.09002 * 109.47045 * 299.99833 * 1 2 3 30 30 H 1.09001 * 109.47375 * 59.99908 * 1 2 3 31 31 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47006 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47142 * 300.00234 * 3 2 1 34 34 H 1.09002 * 109.46838 * 60.00684 * 3 2 1 35 35 H 1.09000 * 109.46497 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.46623 * 60.00164 * 4 2 1 37 37 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 38 38 H 1.09001 * 109.46611 * 179.97438 * 13 2 1 39 39 H 1.09000 * 109.46866 * 299.99774 * 13 2 1 40 40 H 0.96996 * 120.00352 * 359.97438 * 14 13 2 41 41 H 1.09000 * 110.48340 * 261.59653 * 19 17 15 42 42 H 1.09000 * 110.48513 * 24.23276 * 19 17 15 43 43 H 1.09000 * 110.01837 * 179.27916 * 23 22 20 44 44 H 1.08998 * 110.48976 * 335.78449 * 24 23 22 45 45 H 1.09004 * 110.48559 * 98.42799 * 24 23 22 46 46 H 1.09002 * 110.72455 * 279.57485 * 25 24 23 47 47 H 1.09004 * 110.91971 * 156.29607 * 25 24 23 48 48 H 1.08997 * 110.48865 * 203.40378 * 26 25 24 49 49 H 1.09003 * 110.48641 * 80.75576 * 26 25 24 50 50 H 1.09000 * 110.03392 * 238.56668 * 27 23 22 51 51 H 1.09005 * 110.03016 * 359.97438 * 27 23 22 52 52 H 1.08996 * 110.24647 * 258.00994 * 28 22 20 53 53 H 1.09006 * 110.24840 * 136.01267 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4797 6 1 0.9171 0.8674 2.3806 7 6 1.8712 -0.4818 3.7320 8 7 2.6322 -1.5476 3.8525 9 14 1.2491 0.3992 5.2572 10 1 0.4246 1.5663 4.8531 11 1 0.4243 -0.5340 6.0660 12 1 2.4045 0.8659 6.0650 13 6 2.0400 -0.7212 -1.2494 14 7 1.5516 -0.0305 -2.4454 15 6 1.8767 -0.4912 -3.6696 16 8 2.5740 -1.4773 -3.7809 17 6 1.3748 0.2196 -4.9000 18 1 0.2860 0.1977 -4.9438 19 6 1.9018 1.6723 -4.9535 20 6 2.1692 1.9162 -6.4224 21 8 2.3252 3.0074 -6.9282 22 7 2.2095 0.7474 -7.0851 23 6 2.4397 0.6220 -8.5265 24 6 3.7867 1.2719 -8.9050 25 6 3.5163 1.9307 -10.2813 26 6 2.0723 2.4692 -10.1256 27 6 1.3501 1.3826 -9.3025 28 6 1.9927 -0.3868 -6.1794 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 3.1300 -0.7209 1.2494 36 1 1.6766 -1.7490 1.2491 37 1 2.9555 -2.0049 3.0605 38 1 3.1300 -0.7208 -1.2495 39 1 1.6766 -1.7488 -1.2494 40 1 0.9936 0.7579 -2.3564 41 1 1.1470 2.3658 -4.5828 42 1 2.8225 1.7656 -4.3775 43 1 2.4383 -0.4292 -8.8145 44 1 4.0663 2.0262 -8.1695 45 1 4.5653 0.5139 -8.9904 46 1 3.5686 1.1908 -11.0800 47 1 4.2150 2.7466 -10.4663 48 1 1.6009 2.5848 -11.1016 49 1 2.0746 3.4170 -9.5873 50 1 0.8205 0.7006 -9.9677 51 1 0.6498 1.8446 -8.6066 52 1 2.9413 -0.8709 -5.9474 53 1 1.3035 -1.1020 -6.6287 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377128623.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:48 Heat of formation + Delta-G solvation = -120.688563 kcal Electronic energy + Delta-G solvation = -29791.980110 eV Core-core repulsion = 25854.240454 eV Total energy + Delta-G solvation = -3937.739656 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.06586 -40.71170 -38.86768 -38.35938 -37.12540 -35.49072 -34.09642 -32.99073 -29.66552 -29.04396 -28.66275 -28.50231 -28.02402 -27.51468 -25.15569 -23.76557 -22.51913 -21.61209 -21.24898 -20.15107 -19.78688 -18.64098 -18.39774 -17.87349 -17.23442 -16.96117 -16.41011 -16.30960 -15.83363 -15.76424 -15.51614 -15.48358 -15.24071 -14.81458 -14.63042 -14.41254 -14.26223 -14.20002 -14.10975 -13.69960 -13.65451 -13.03800 -12.81609 -12.69913 -12.66440 -12.61526 -12.56541 -12.38353 -12.28661 -12.04830 -11.97673 -11.90085 -11.87917 -11.83645 -11.61602 -11.47155 -11.28993 -11.06250 -10.67435 -10.49358 -10.46197 -10.11960 -9.69383 -8.58620 -6.27669 1.49639 1.54940 1.55239 1.63834 1.78293 1.83885 2.20832 2.60801 3.16268 3.24316 3.29760 3.64242 3.65328 3.72952 3.84329 3.90178 4.00169 4.00966 4.13238 4.17452 4.37814 4.45642 4.47636 4.56321 4.57545 4.59577 4.61276 4.65141 4.72504 4.75053 4.78493 4.88002 4.90526 4.91775 4.98933 5.00589 5.04788 5.06480 5.19146 5.24454 5.28815 5.32817 5.35958 5.43847 5.46014 5.53134 5.67195 5.68840 6.09050 6.10294 6.29382 6.51645 6.67137 7.12226 7.19015 7.52606 8.81439 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.032073 B = 0.001957 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.802187 B =14302.614608 C =14605.428027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.059 4.059 3 C -0.123 4.123 4 C 0.023 3.977 5 C -0.587 4.587 6 H 0.065 0.935 7 C -0.048 4.048 8 N -0.948 5.948 9 Si 1.118 2.882 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.142 3.858 14 N -0.705 5.705 15 C 0.523 3.477 16 O -0.579 6.579 17 C -0.107 4.107 18 H 0.153 0.847 19 C -0.143 4.143 20 C 0.513 3.487 21 O -0.559 6.559 22 N -0.610 5.610 23 C 0.146 3.854 24 C -0.137 4.137 25 C -0.116 4.116 26 C -0.121 4.121 27 C -0.126 4.126 28 C 0.118 3.882 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.052 0.948 35 H -0.019 1.019 36 H -0.017 1.017 37 H 0.253 0.747 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.415 0.585 41 H 0.134 0.866 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.048 0.952 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.078 0.922 49 H 0.045 0.955 50 H 0.091 0.909 51 H 0.052 0.948 52 H 0.073 0.927 53 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.648 6.454 -28.388 29.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.060 4.060 3 C -0.180 4.180 4 C -0.015 4.015 5 C -0.625 4.625 6 H 0.083 0.917 7 C -0.244 4.244 8 N -0.587 5.587 9 Si 0.941 3.059 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.213 1.213 13 C 0.017 3.983 14 N -0.357 5.357 15 C 0.309 3.691 16 O -0.459 6.459 17 C -0.129 4.129 18 H 0.170 0.830 19 C -0.184 4.184 20 C 0.302 3.698 21 O -0.438 6.438 22 N -0.343 5.343 23 C 0.044 3.956 24 C -0.176 4.176 25 C -0.154 4.154 26 C -0.158 4.158 27 C -0.165 4.165 28 C -0.005 4.005 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.071 0.929 35 H -0.001 1.001 36 H 0.001 0.999 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.253 0.747 41 H 0.152 0.848 42 H 0.122 0.878 43 H 0.134 0.866 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.082 0.918 48 H 0.097 0.903 49 H 0.064 0.936 50 H 0.109 0.891 51 H 0.071 0.929 52 H 0.091 0.909 53 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.049 6.284 -27.165 28.336 hybrid contribution 0.383 -0.165 -0.967 1.053 sum -4.667 6.119 -28.133 29.166 Atomic orbital electron populations 1.21699 0.93359 1.01027 1.01832 1.20595 0.96847 0.96160 0.92372 1.21708 0.99781 0.94685 1.01824 1.19158 0.93880 0.94373 0.94065 1.22416 1.33589 1.14126 0.92363 0.91715 1.27308 0.95099 0.96632 1.05387 1.70857 1.34747 1.20313 1.32761 0.82915 0.75984 0.75056 0.71986 1.18764 1.21110 1.21271 1.21200 0.97775 0.95464 0.83847 1.45929 1.53031 1.32074 1.04673 1.20599 0.79518 0.83958 0.84987 1.90721 1.39678 1.28313 1.87178 1.22195 1.04553 0.94481 0.91657 0.82973 1.22405 1.05227 0.96445 0.94275 1.21033 0.75431 0.83695 0.89680 1.90706 1.51665 1.26874 1.74576 1.48597 1.70434 1.07038 1.08251 1.21915 0.94741 1.01624 0.77292 1.22739 0.96944 0.99930 0.97971 1.22427 0.96432 1.00206 0.96322 1.22275 0.95842 0.97937 0.99789 1.22463 0.97298 0.98019 0.98699 1.22023 1.02235 0.88428 0.87821 0.92919 0.90589 0.94374 0.94622 0.90639 0.92888 1.00110 0.99913 0.93729 0.93581 0.93217 0.74671 0.84832 0.87846 0.86626 0.93288 0.90473 0.89459 0.91837 0.90323 0.93559 0.89088 0.92890 0.90862 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.79 8.05 71.98 0.58 -3.21 16 2 C -0.06 -2.09 0.54 -52.18 -0.03 -2.11 16 3 C -0.12 -3.89 8.05 71.98 0.58 -3.31 16 4 C 0.02 1.11 3.35 29.85 0.10 1.21 16 5 C -0.59 -31.04 7.65 25.60 0.20 -30.85 16 6 H 0.06 3.25 5.68 -2.91 -0.02 3.23 16 7 C -0.05 -2.70 5.46 84.66 0.46 -2.24 16 8 N -0.95 -58.57 13.65 21.45 0.29 -58.28 16 9 Si 1.12 49.36 29.90 68.60 2.05 51.41 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 13 C 0.14 4.50 4.56 86.38 0.39 4.90 16 14 N -0.70 -15.68 4.91 -463.05 -2.27 -17.95 16 15 C 0.52 11.62 7.07 87.66 0.62 12.24 16 16 O -0.58 -18.11 15.57 -3.04 -0.05 -18.16 16 17 C -0.11 -1.46 3.55 -10.48 -0.04 -1.50 16 18 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 19 C -0.14 -2.09 6.37 30.59 0.19 -1.89 16 20 C 0.51 10.38 6.84 87.90 0.60 10.98 16 21 O -0.56 -15.31 15.91 -3.03 -0.05 -15.36 16 22 N -0.61 -9.98 2.83 -790.01 -2.23 -12.21 16 23 C 0.15 2.07 3.54 45.72 0.16 2.23 16 24 C -0.14 -2.22 6.30 31.70 0.20 -2.02 16 25 C -0.12 -1.54 6.91 31.91 0.22 -1.32 16 26 C -0.12 -1.78 6.83 31.67 0.22 -1.57 16 27 C -0.13 -1.73 6.01 31.32 0.19 -1.54 16 28 C 0.12 1.70 6.63 86.83 0.58 2.28 16 29 H 0.05 1.83 6.62 -2.39 -0.02 1.81 16 30 H 0.08 1.66 6.86 -2.39 -0.02 1.65 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.07 1.71 6.86 -2.39 -0.02 1.69 16 34 H 0.05 1.86 6.62 -2.39 -0.02 1.85 16 35 H -0.02 -1.05 8.00 -2.39 -0.02 -1.07 16 36 H -0.02 -0.93 8.01 -2.39 -0.02 -0.95 16 37 H 0.25 15.95 7.22 -92.71 -0.67 15.28 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.41 6.74 6.16 -92.71 -0.57 6.17 16 41 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.10 1.69 7.89 -2.39 -0.02 1.67 16 43 H 0.12 1.11 8.09 -2.39 -0.02 1.09 16 44 H 0.05 1.10 6.48 -2.39 -0.02 1.09 16 45 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 48 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.05 0.94 8.07 -2.39 -0.02 0.92 16 50 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.05 0.92 7.34 -2.38 -0.02 0.90 16 52 H 0.07 1.38 7.06 -2.39 -0.02 1.36 16 53 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -74.46 406.46 3.39 -71.08 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.42 Total: 17.20 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 5.22 Total: -17.73 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -4.21 Total: -88.44 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.10 Total: -33.52 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.05 Total: 51.41 kcal Total: -74.46 3.39 -71.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377128623.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.612 kcal (2) G-P(sol) polarization free energy of solvation -74.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds