Wall clock time and date at job start Tue Mar 31 2020 19:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46664 * 2 1 4 4 C 1.53004 * 109.46981 * 119.99648 * 2 1 3 5 5 C 1.52996 * 109.47190 * 71.69204 * 4 2 1 6 6 H 1.08997 * 109.47135 * 54.01361 * 5 4 2 7 7 C 1.50702 * 109.46985 * 174.01647 * 5 4 2 8 8 O 1.21285 * 119.99978 * 107.32985 * 7 5 4 9 9 N 1.34767 * 120.00040 * 287.32623 * 7 5 4 10 10 C 1.46498 * 120.00271 * 174.93726 * 9 7 5 11 11 C 1.52998 * 109.47415 * 184.56305 * 10 9 7 12 12 C 1.50696 * 115.55409 * 302.66665 * 11 10 9 13 13 H 1.08001 * 120.00272 * 95.13910 * 12 11 10 14 14 C 1.37879 * 119.99960 * 275.14281 * 12 11 10 15 15 N 1.31516 * 119.99658 * 6.01645 * 14 12 11 16 16 Si 1.86794 * 120.00263 * 186.01172 * 14 12 11 17 17 H 1.48499 * 109.47324 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.47110 * 120.00120 * 16 14 12 19 19 H 1.48503 * 109.47650 * 240.00035 * 16 14 12 20 20 C 1.53008 * 117.49971 * 156.98948 * 11 10 9 21 21 C 1.53002 * 117.49691 * 88.33029 * 11 10 9 22 22 N 1.46500 * 109.47250 * 294.01347 * 5 4 2 23 23 C 1.45760 * 117.94670 * 125.92455 * 22 5 4 24 24 C 1.52922 * 110.48536 * 160.92713 * 23 22 5 25 25 C 1.53344 * 108.67336 * 50.75556 * 24 23 22 26 26 C 1.53061 * 108.42733 * 292.46776 * 25 24 23 27 27 C 1.33239 * 117.98495 * 306.00524 * 22 5 4 28 28 O 1.21287 * 118.15565 * 2.20864 * 27 22 5 29 29 H 1.09003 * 109.46658 * 172.36406 * 1 2 3 30 30 H 1.08995 * 109.47382 * 292.35724 * 1 2 3 31 31 H 1.08995 * 109.47353 * 52.36510 * 1 2 3 32 32 H 1.08998 * 109.46918 * 239.99651 * 2 1 3 33 33 H 1.08997 * 109.47203 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47201 * 299.99366 * 3 2 1 35 35 H 1.08999 * 109.47554 * 59.99636 * 3 2 1 36 36 H 1.09001 * 109.47065 * 311.69203 * 4 2 1 37 37 H 1.09001 * 109.46949 * 191.69180 * 4 2 1 38 38 H 0.97008 * 119.99838 * 354.93732 * 9 7 5 39 39 H 1.08997 * 109.47040 * 304.56908 * 10 9 7 40 40 H 1.08999 * 109.46850 * 64.56783 * 10 9 7 41 41 H 0.97009 * 119.99730 * 185.00098 * 15 14 12 42 42 H 1.08996 * 117.49588 * 0.02562 * 20 11 10 43 43 H 1.08999 * 117.49431 * 145.02127 * 20 11 10 44 44 H 1.09000 * 117.50213 * 214.98309 * 21 11 10 45 45 H 1.09002 * 117.49846 * 359.97438 * 21 11 10 46 46 H 1.09001 * 109.29648 * 40.62074 * 23 22 5 47 47 H 1.08997 * 109.30329 * 281.24086 * 23 22 5 48 48 H 1.08995 * 109.60457 * 290.99970 * 24 23 22 49 49 H 1.08997 * 109.60058 * 170.51058 * 24 23 22 50 50 H 1.09002 * 109.67217 * 172.73424 * 25 24 23 51 51 H 1.09005 * 109.67621 * 52.20493 * 25 24 23 52 52 H 1.09005 * 109.40399 * 169.02985 * 26 25 24 53 53 H 1.09001 * 109.40053 * 288.85913 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.7828 -2.2231 1.1119 6 1 2.2167 -2.5821 0.1787 7 6 2.4145 -2.9491 2.2717 8 8 1.7171 -3.4161 3.1472 9 7 3.7543 -3.0794 2.3359 10 6 4.3755 -3.6863 3.5157 11 6 5.8982 -3.6108 3.3862 12 6 6.4790 -4.2599 2.1565 13 1 6.6848 -3.6659 1.2783 14 6 6.7475 -5.6123 2.1524 15 7 6.3886 -6.3570 3.1753 16 14 7.6207 -6.3868 0.6940 17 1 7.9158 -5.3414 -0.3185 18 1 8.8911 -7.0064 1.1498 19 1 6.7503 -7.4283 0.0917 20 6 6.7209 -3.6754 4.6746 21 6 6.5906 -2.3530 3.9148 22 7 0.3393 -2.4730 1.1073 23 6 -0.2188 -3.2332 -0.0040 24 6 -1.5909 -3.7966 0.3684 25 6 -2.4537 -2.6586 0.9271 26 6 -1.8597 -2.2134 2.2657 27 6 -0.3821 -1.9899 2.1180 28 8 0.1870 -1.3353 2.9658 29 1 -0.3633 -1.0186 -0.1366 30 1 -0.3634 0.3909 0.9504 31 1 -0.3634 0.6275 -0.8138 32 1 1.8933 -0.5139 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6765 1.9564 0.8899 36 1 1.5167 -0.3417 2.1270 37 1 3.1099 -0.5444 1.3596 38 1 4.3074 -2.7713 1.6009 39 1 4.0598 -3.1486 4.4097 40 1 4.0687 -4.7295 3.5917 41 1 6.6410 -7.2932 3.2058 42 1 6.1774 -3.7722 5.6144 43 1 7.6823 -4.1873 4.6326 44 1 7.4663 -1.9952 3.3734 45 1 5.9613 -1.5791 4.3545 46 1 0.4530 -4.0551 -0.2516 47 1 -0.3205 -2.5812 -0.8716 48 1 -1.4745 -4.5725 1.1250 49 1 -2.0671 -4.2153 -0.5180 50 1 -3.4739 -3.0116 1.0776 51 1 -2.4537 -1.8214 0.2290 52 1 -2.3363 -1.2858 2.5827 53 1 -2.0360 -2.9854 3.0147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431140745.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:04 Heat of formation + Delta-G solvation = -69.118044 kcal Electronic energy + Delta-G solvation = -31663.375580 eV Core-core repulsion = 27727.872189 eV Total energy + Delta-G solvation = -3935.503390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.28778 -40.12062 -38.43957 -37.55866 -37.17667 -34.92021 -34.53416 -33.98550 -31.09498 -30.32211 -28.10033 -27.93207 -27.18150 -25.44556 -25.01025 -23.28464 -22.95132 -21.41500 -21.20084 -20.93511 -19.40130 -18.56336 -18.05088 -17.71432 -16.97123 -16.65794 -16.61760 -16.30742 -16.02492 -15.65942 -15.34824 -15.15173 -14.99198 -14.69826 -14.54630 -14.34620 -14.24130 -14.10929 -13.94870 -13.62529 -13.49714 -13.17545 -13.00049 -12.85004 -12.79558 -12.69977 -12.39389 -12.30667 -12.10725 -12.07305 -11.92850 -11.83799 -11.78591 -11.51326 -11.48674 -11.33281 -10.88672 -10.79567 -10.48083 -10.22657 -10.12773 -9.79260 -9.50187 -8.10589 -6.24542 1.42358 1.46090 1.55881 1.69140 1.76109 2.06166 2.42564 2.54054 3.18884 3.44325 3.62850 3.82399 3.85619 3.91026 3.96503 3.96821 4.05268 4.17426 4.20505 4.25869 4.43672 4.51413 4.52119 4.59038 4.61363 4.63547 4.70038 4.79445 4.85737 4.87966 4.90714 4.95880 4.96048 5.02010 5.06243 5.07699 5.13516 5.17118 5.19184 5.22865 5.33637 5.37106 5.43565 5.51288 5.52645 5.57315 5.66143 5.71225 5.77264 6.35428 6.62219 6.78624 6.85256 7.35324 7.45569 7.47131 8.98146 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012909 B = 0.003524 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.490184 B = 7943.339051 C = 8324.620376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.131 4.131 5 C 0.138 3.862 6 H 0.134 0.866 7 C 0.491 3.509 8 O -0.584 6.584 9 N -0.697 5.697 10 C 0.184 3.816 11 C 0.009 3.991 12 C -0.500 4.500 13 H 0.068 0.932 14 C 0.025 3.975 15 N -0.909 5.909 16 Si 0.951 3.049 17 H -0.257 1.257 18 H -0.286 1.286 19 H -0.288 1.288 20 C -0.161 4.161 21 C -0.178 4.178 22 N -0.583 5.583 23 C 0.098 3.902 24 C -0.134 4.134 25 C -0.113 4.113 26 C -0.134 4.134 27 C 0.520 3.480 28 O -0.583 6.583 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.410 0.590 39 H 0.023 0.977 40 H 0.025 0.975 41 H 0.258 0.742 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.052 0.948 49 H 0.116 0.884 50 H 0.096 0.904 51 H 0.086 0.914 52 H 0.102 0.898 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.226 10.503 -13.360 23.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.101 4.101 3 C -0.201 4.201 4 C -0.170 4.170 5 C 0.030 3.970 6 H 0.151 0.849 7 C 0.277 3.723 8 O -0.464 6.464 9 N -0.347 5.347 10 C 0.060 3.940 11 C 0.008 3.992 12 C -0.538 4.538 13 H 0.086 0.914 14 C -0.176 4.176 15 N -0.547 5.547 16 Si 0.777 3.223 17 H -0.181 1.181 18 H -0.212 1.212 19 H -0.214 1.214 20 C -0.199 4.199 21 C -0.215 4.215 22 N -0.315 5.315 23 C -0.023 4.023 24 C -0.171 4.171 25 C -0.150 4.150 26 C -0.173 4.173 27 C 0.310 3.690 28 O -0.463 6.463 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.246 0.754 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.119 0.881 48 H 0.071 0.929 49 H 0.134 0.866 50 H 0.115 0.885 51 H 0.104 0.896 52 H 0.120 0.880 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.514 10.307 -12.266 23.009 hybrid contribution 1.183 -0.979 0.146 1.543 sum -15.331 9.328 -12.120 21.655 Atomic orbital electron populations 1.22239 0.95160 1.03307 1.00656 1.21022 0.96332 0.96221 0.96531 1.21808 1.01085 0.95554 1.01648 1.22145 1.01971 0.91410 1.01443 1.21068 0.82418 0.96692 0.96804 0.84865 1.21651 0.82363 0.79645 0.88636 1.90616 1.62931 1.50524 1.42316 1.45768 1.06199 1.61086 1.21659 1.20447 0.93267 0.94693 0.85639 1.19080 0.88491 0.96972 0.94678 1.20666 1.42132 0.92684 0.98275 0.91354 1.25728 0.95850 0.97656 0.98333 1.70172 1.44838 1.07043 1.32616 0.85613 0.77962 0.78552 0.80138 1.18085 1.21238 1.21441 1.22420 1.01533 1.00476 0.95495 1.23012 1.03182 0.90578 1.04697 1.47117 1.05732 1.54368 1.24260 1.21867 0.96216 0.95834 0.88423 1.21907 0.93968 0.98088 1.03148 1.21669 1.00129 0.98930 0.94306 1.21706 0.89822 1.04380 1.01441 1.20473 0.90817 0.77875 0.79807 1.90589 1.72337 1.41982 1.41405 0.90381 0.95194 0.91707 0.89610 0.92520 0.91192 0.94108 0.90288 0.91179 0.75433 0.95851 0.95683 0.93309 0.91703 0.91443 0.89139 0.90075 0.90713 0.88097 0.92883 0.86578 0.88541 0.89551 0.88001 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 7.70 71.98 0.55 -2.25 16 2 C -0.08 -1.59 2.88 -10.79 -0.03 -1.62 16 3 C -0.14 -2.59 9.16 71.98 0.66 -1.93 16 4 C -0.13 -3.54 4.11 30.59 0.13 -3.41 16 5 C 0.14 3.93 2.37 44.24 0.10 4.03 16 6 H 0.13 2.93 7.77 -2.39 -0.02 2.91 16 7 C 0.49 19.78 6.67 87.66 0.58 20.36 16 8 O -0.58 -28.94 14.54 16.38 0.24 -28.71 16 9 N -0.70 -28.64 5.42 -463.08 -2.51 -31.15 16 10 C 0.18 9.01 5.55 86.38 0.48 9.48 16 11 C 0.01 0.41 1.49 -52.93 -0.08 0.33 16 12 C -0.50 -25.26 8.21 25.60 0.21 -25.05 16 13 H 0.07 3.28 7.82 -2.91 -0.02 3.26 16 14 C 0.02 1.31 5.39 84.65 0.46 1.76 16 15 N -0.91 -51.68 12.93 21.45 0.28 -51.40 16 16 Si 0.95 41.37 29.54 68.60 2.03 43.39 16 17 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 18 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 20 C -0.16 -7.62 9.47 30.62 0.29 -7.33 16 21 C -0.18 -7.40 9.94 30.62 0.30 -7.10 16 22 N -0.58 -14.69 1.25 -806.96 -1.01 -15.70 16 23 C 0.10 1.57 5.45 86.49 0.47 2.04 16 24 C -0.13 -1.75 6.02 30.68 0.18 -1.56 16 25 C -0.11 -1.38 5.92 30.73 0.18 -1.19 16 26 C -0.13 -2.83 6.03 29.70 0.18 -2.65 16 27 C 0.52 15.50 4.06 87.73 0.36 15.86 16 28 O -0.58 -23.17 12.59 16.37 0.21 -22.97 16 29 H 0.08 1.26 2.67 -2.39 -0.01 1.25 16 30 H 0.03 0.68 7.54 -2.39 -0.02 0.66 16 31 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 32 H 0.09 1.34 8.05 -2.39 -0.02 1.32 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 2.74 5.13 -2.39 -0.01 2.72 16 37 H 0.07 1.89 8.09 -2.39 -0.02 1.87 16 38 H 0.41 14.96 8.06 -92.70 -0.75 14.21 16 39 H 0.02 1.17 8.11 -2.39 -0.02 1.15 16 40 H 0.02 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.26 14.11 8.32 -92.70 -0.77 13.34 16 42 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.07 3.37 8.14 -2.39 -0.02 3.35 16 44 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 45 H 0.08 3.13 8.14 -2.39 -0.02 3.12 16 46 H 0.07 1.24 8.08 -2.39 -0.02 1.22 16 47 H 0.10 1.02 6.68 -2.39 -0.02 1.01 16 48 H 0.05 0.95 8.12 -2.39 -0.02 0.93 16 49 H 0.12 0.80 8.14 -2.39 -0.02 0.79 16 50 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.09 0.83 7.65 -2.38 -0.02 0.81 16 52 H 0.10 1.96 8.14 -2.38 -0.02 1.95 16 53 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -74.32 405.95 4.40 -69.91 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: 0.14 Total: 36.84 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 5.03 Total: -0.22 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -3.24 Total: -98.25 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: 0.44 Total: -51.67 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -74.32 4.40 -69.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431140745.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.795 kcal (2) G-P(sol) polarization free energy of solvation -74.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds