Wall clock time and date at job start Tue Mar 31 2020 19:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46868 * 2 1 4 4 C 1.53000 * 109.46951 * 175.00117 * 3 2 1 5 5 C 1.53001 * 109.47191 * 184.99914 * 4 3 2 6 6 N 1.46498 * 109.47091 * 294.99683 * 3 2 1 7 7 C 1.46769 * 124.34779 * 119.72669 * 6 3 2 8 8 C 1.54659 * 105.38066 * 162.85532 * 7 6 3 9 9 H 1.09004 * 110.85119 * 143.79217 * 8 7 6 10 10 C 1.50696 * 111.19442 * 267.59545 * 8 7 6 11 11 O 1.21285 * 119.99921 * 353.86066 * 10 8 7 12 12 N 1.34780 * 120.00073 * 173.86773 * 10 8 7 13 13 C 1.46924 * 120.63071 * 359.71631 * 12 10 8 14 14 C 1.52765 * 109.00903 * 233.58934 * 13 12 10 15 15 C 1.53044 * 109.37917 * 305.58763 * 14 13 12 16 16 C 1.50700 * 109.45705 * 181.26247 * 15 14 13 17 17 H 1.08006 * 119.99443 * 245.37671 * 16 15 14 18 18 C 1.37874 * 120.00326 * 65.38291 * 16 15 14 19 19 N 1.31514 * 119.99959 * 9.57177 * 18 16 15 20 20 Si 1.86799 * 120.00076 * 189.58005 * 18 16 15 21 21 H 1.48491 * 109.47406 * 94.98644 * 20 18 16 22 22 H 1.48506 * 109.46805 * 214.99074 * 20 18 16 23 23 H 1.48497 * 109.46917 * 334.98312 * 20 18 16 24 24 C 1.53039 * 109.53746 * 61.24140 * 15 14 13 25 25 C 1.46928 * 120.62907 * 180.02562 * 12 10 8 26 26 C 1.54632 * 101.68410 * 25.76836 * 8 7 6 27 27 C 1.34417 * 124.35387 * 300.02963 * 6 3 2 28 28 O 1.21284 * 124.93973 * 0.42778 * 27 6 3 29 29 H 1.08996 * 109.47574 * 60.00060 * 1 2 3 30 30 H 1.09003 * 109.47455 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47390 * 299.99655 * 1 2 3 32 32 H 1.08994 * 109.46879 * 119.99672 * 2 1 3 33 33 H 1.08997 * 109.47041 * 239.99670 * 2 1 3 34 34 H 1.08994 * 109.47018 * 55.00096 * 3 2 1 35 35 H 1.09004 * 109.46898 * 304.99895 * 4 3 2 36 36 H 1.09000 * 109.47301 * 64.99880 * 4 3 2 37 37 H 1.09000 * 109.47274 * 179.97438 * 5 4 3 38 38 H 1.09004 * 109.47185 * 299.99806 * 5 4 3 39 39 H 1.09000 * 109.47026 * 59.99798 * 5 4 3 40 40 H 1.08997 * 110.24291 * 281.98283 * 7 6 3 41 41 H 1.09000 * 110.24502 * 43.98626 * 7 6 3 42 42 H 1.08999 * 109.58678 * 353.41639 * 13 12 10 43 43 H 1.08995 * 109.58780 * 113.84547 * 13 12 10 44 44 H 1.08994 * 109.56682 * 185.55434 * 14 13 12 45 45 H 1.09005 * 109.38788 * 65.50898 * 14 13 12 46 46 H 1.08999 * 109.45023 * 301.22837 * 15 14 13 47 47 H 0.97002 * 119.99914 * 179.97438 * 19 18 16 48 48 H 1.09008 * 109.49374 * 178.68237 * 24 15 14 49 49 H 1.08995 * 109.52987 * 58.60163 * 24 15 14 50 50 H 1.08999 * 109.57929 * 246.15313 * 25 12 10 51 51 H 1.08993 * 109.58577 * 6.43095 * 25 12 10 52 52 H 1.08999 * 110.48334 * 216.30772 * 26 8 7 53 53 H 1.09001 * 110.59597 * 93.72410 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5647 1.4444 0.1257 5 6 4.0644 2.8851 0.2511 6 7 1.6524 2.0975 -1.2518 7 6 0.8027 3.2914 -1.3332 8 6 1.0294 3.8601 -2.7535 9 1 0.1061 4.2763 -3.1567 10 6 2.1294 4.8900 -2.7589 11 8 2.6281 5.2501 -1.7136 12 7 2.5590 5.4112 -3.9253 13 6 1.9689 4.9805 -5.2000 14 6 3.0863 4.5256 -6.1371 15 6 4.1240 5.6426 -6.2700 16 6 5.2113 5.2075 -7.2183 17 1 6.2187 5.0647 -6.8559 18 6 4.9203 4.9919 -8.5486 19 7 3.7482 5.3433 -9.0307 20 14 6.1906 4.2003 -9.6663 21 1 5.9420 2.7382 -9.7406 22 1 6.0895 4.7895 -11.0257 23 1 7.5501 4.4442 -9.1210 24 6 4.7332 5.9410 -4.8981 25 6 3.6310 6.4157 -3.9466 26 6 1.4528 2.5941 -3.5339 27 6 2.0245 1.6788 -2.4737 28 8 2.7173 0.7081 -2.6943 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.6053 1.9815 0.8418 35 1 3.8570 0.8801 1.0113 36 1 4.0029 0.9836 -0.7597 37 1 5.1507 2.8864 0.3411 38 1 3.7722 3.4494 -0.6345 39 1 3.6263 3.3458 1.1364 40 1 -0.2438 3.0197 -1.1953 41 1 1.1057 4.0218 -0.5830 42 1 1.2822 4.1526 -5.0236 43 1 1.4316 5.8133 -5.6538 44 1 2.6697 4.2975 -7.1182 45 1 3.5617 3.6343 -5.7275 46 1 3.6428 6.5409 -6.6567 47 1 3.5436 5.1919 -9.9667 48 1 5.4888 6.7204 -4.9974 49 1 5.1932 5.0370 -4.4993 50 1 3.2322 7.3681 -4.2959 51 1 4.0388 6.5363 -2.9431 52 1 2.2126 2.8397 -4.2759 53 1 0.5893 2.1316 -4.0120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542907184.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:08 Heat of formation + Delta-G solvation = -101.951023 kcal Electronic energy + Delta-G solvation = -31780.545881 eV Core-core repulsion = 27843.618745 eV Total energy + Delta-G solvation = -3936.927135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.21721 -40.63264 -38.47859 -37.59958 -36.63462 -35.31702 -33.28848 -33.01165 -32.21728 -31.25783 -28.73427 -28.09421 -27.31346 -25.26223 -24.10484 -23.32553 -23.00684 -22.89509 -21.37105 -19.94321 -19.64683 -18.66449 -18.22051 -17.79154 -17.22048 -16.68742 -16.49112 -16.19065 -15.89275 -15.64628 -15.31027 -14.97610 -14.78600 -14.71934 -14.62065 -14.31374 -14.23732 -13.95625 -13.86995 -13.80215 -13.44526 -13.28185 -13.22569 -13.17528 -12.80087 -12.71398 -12.53294 -12.47271 -12.43631 -12.18837 -12.00576 -11.98870 -11.86406 -11.77672 -11.74865 -11.49677 -11.01437 -10.91513 -10.63279 -10.55691 -10.41095 -9.59077 -9.52313 -8.13928 -6.20583 1.37828 1.41434 1.49238 1.59390 1.61005 2.03934 2.11735 2.42571 3.15997 3.29470 3.36356 3.45943 3.74763 3.89997 4.02762 4.09843 4.15436 4.26314 4.29610 4.34022 4.40290 4.46386 4.48909 4.55660 4.56855 4.58556 4.60593 4.70652 4.72806 4.76631 4.85688 4.86210 4.91568 4.96922 4.99374 5.02071 5.11498 5.16622 5.19512 5.24219 5.25812 5.35732 5.38911 5.40917 5.53257 5.65632 5.76910 5.96838 6.03624 6.21031 6.38046 6.53423 6.88303 7.18404 7.22334 7.45550 8.93382 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.003323 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.577207 B = 8424.159583 C = 8867.716695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.160 3.840 4 C -0.137 4.137 5 C -0.144 4.144 6 N -0.601 5.601 7 C 0.118 3.882 8 C -0.115 4.115 9 H 0.166 0.834 10 C 0.514 3.486 11 O -0.570 6.570 12 N -0.601 5.601 13 C 0.108 3.892 14 C -0.110 4.110 15 C 0.047 3.953 16 C -0.538 4.538 17 H 0.041 0.959 18 C 0.025 3.975 19 N -0.908 5.908 20 Si 0.938 3.062 21 H -0.278 1.278 22 H -0.281 1.281 23 H -0.275 1.275 24 C -0.114 4.114 25 C 0.120 3.880 26 C -0.157 4.157 27 C 0.509 3.491 28 O -0.575 6.575 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.026 0.974 46 H 0.012 0.988 47 H 0.262 0.738 48 H 0.059 0.941 49 H 0.032 0.968 50 H 0.073 0.927 51 H 0.079 0.921 52 H 0.092 0.908 53 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.302 -4.853 18.261 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.058 3.942 4 C -0.175 4.175 5 C -0.202 4.202 6 N -0.333 5.333 7 C -0.004 4.004 8 C -0.136 4.136 9 H 0.183 0.817 10 C 0.303 3.697 11 O -0.450 6.450 12 N -0.333 5.333 13 C -0.014 4.014 14 C -0.148 4.148 15 C 0.029 3.971 16 C -0.576 4.576 17 H 0.059 0.941 18 C -0.175 4.175 19 N -0.547 5.547 20 Si 0.765 3.235 21 H -0.204 1.204 22 H -0.206 1.206 23 H -0.200 1.200 24 C -0.152 4.152 25 C -0.002 4.002 26 C -0.197 4.197 27 C 0.298 3.702 28 O -0.456 6.456 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.137 0.863 41 H 0.109 0.891 42 H 0.129 0.871 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.045 0.955 46 H 0.030 0.970 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.051 0.949 50 H 0.091 0.909 51 H 0.097 0.903 52 H 0.110 0.890 53 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.767 -5.166 18.610 23.152 hybrid contribution 1.498 -0.338 -1.387 2.069 sum -11.269 -5.504 17.223 21.305 Atomic orbital electron populations 1.21677 0.94016 1.01936 1.02241 1.21895 0.97599 0.95535 1.02522 1.21194 0.93945 0.93716 0.85366 1.21904 0.95990 0.97521 1.02107 1.21680 1.00148 0.96303 1.02025 1.48364 1.50055 1.29265 1.05629 1.22280 0.96230 0.86112 0.95756 1.22414 0.99688 0.93182 0.98273 0.81675 1.20830 0.84069 0.82065 0.82737 1.90629 1.59432 1.62915 1.32014 1.48185 1.36988 1.41279 1.06824 1.21992 0.95837 1.00942 0.82642 1.21645 0.96594 0.98281 0.98327 1.18579 0.93583 0.94310 0.90661 1.21503 0.95645 1.46230 0.94264 0.94113 1.25522 0.97130 0.95755 0.99045 1.70013 1.23057 1.46915 1.14673 0.85848 0.80039 0.78967 0.78645 1.20425 1.20610 1.20039 1.21838 0.97354 0.99563 0.96491 1.21520 0.87870 0.90916 0.99935 1.22691 1.04861 0.94549 0.97605 1.21148 0.79125 0.84461 0.85508 1.90669 1.40063 1.30238 1.84610 0.93210 0.92616 0.91027 0.89646 0.93562 0.86921 0.89277 0.94098 0.93896 0.93979 0.91492 0.86282 0.89096 0.87143 0.90814 0.91895 0.95473 0.96959 0.92856 0.92205 0.94866 0.90871 0.90275 0.89011 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.80 71.98 0.71 -1.24 16 2 C -0.14 -2.50 5.36 30.59 0.16 -2.34 16 3 C 0.16 3.09 2.26 44.99 0.10 3.20 16 4 C -0.14 -3.24 5.36 30.59 0.16 -3.08 16 5 C -0.14 -3.70 9.80 71.98 0.71 -2.99 16 6 N -0.60 -12.91 1.74 -793.69 -1.38 -14.29 16 7 C 0.12 1.88 6.69 86.89 0.58 2.46 16 8 C -0.11 -2.10 2.60 -10.42 -0.03 -2.13 16 9 H 0.17 1.68 8.06 -2.38 -0.02 1.66 16 10 C 0.51 14.42 7.11 87.66 0.62 15.04 16 11 O -0.57 -18.86 13.59 -3.04 -0.04 -18.91 16 12 N -0.60 -18.64 2.96 -819.83 -2.42 -21.07 16 13 C 0.11 3.26 5.38 86.22 0.46 3.73 16 14 C -0.11 -4.60 5.02 30.53 0.15 -4.45 16 15 C 0.05 2.24 1.93 -11.51 -0.02 2.21 16 16 C -0.54 -29.35 8.48 25.60 0.22 -29.14 16 17 H 0.04 2.27 7.77 -2.91 -0.02 2.25 16 18 C 0.03 1.37 5.19 84.65 0.44 1.81 16 19 N -0.91 -50.08 12.16 21.45 0.26 -49.82 16 20 Si 0.94 43.51 29.55 68.60 2.03 45.53 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 24 C -0.11 -4.70 5.30 30.66 0.16 -4.54 16 25 C 0.12 4.11 6.43 86.35 0.56 4.66 16 26 C -0.16 -3.51 4.99 30.59 0.15 -3.36 16 27 C 0.51 14.41 7.37 87.90 0.65 15.05 16 28 O -0.58 -21.52 15.02 -3.04 -0.05 -21.56 16 29 H 0.05 0.73 7.75 -2.39 -0.02 0.71 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 1.18 6.62 -2.39 -0.02 1.16 16 34 H 0.11 1.62 8.07 -2.39 -0.02 1.60 16 35 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.04 1.28 6.65 -2.39 -0.02 1.26 16 37 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.04 1.33 6.35 -2.38 -0.02 1.32 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 1.64 6.97 -2.39 -0.02 1.62 16 42 H 0.11 2.54 4.52 -2.39 -0.01 2.53 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.06 2.94 6.87 -2.39 -0.02 2.93 16 45 H 0.03 1.19 7.41 -2.38 -0.02 1.17 16 46 H 0.01 0.63 8.09 -2.39 -0.02 0.61 16 47 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 48 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 49 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 51 H 0.08 2.71 7.00 -2.39 -0.02 2.70 16 52 H 0.09 2.63 5.11 -2.39 -0.01 2.62 16 53 H 0.15 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -70.73 398.63 5.07 -65.67 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.88 Total: 19.54 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 5.79 Total: -5.09 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -3.54 Total: -85.17 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -0.09 Total: -40.47 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -70.73 5.07 -65.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542907184.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.286 kcal (2) G-P(sol) polarization free energy of solvation -70.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds