Wall clock time and date at job start Tue Mar 31 2020 19:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47251 * 2 1 4 4 C 1.53007 * 109.46875 * 119.99682 * 2 1 3 5 5 C 1.53000 * 109.47104 * 175.00022 * 4 2 1 6 6 N 1.46502 * 109.46872 * 180.02562 * 5 4 2 7 7 C 1.33872 * 122.75883 * 89.97759 * 6 5 4 8 8 O 1.21219 * 125.40371 * 0.02562 * 7 6 5 9 9 C 1.51324 * 109.20207 * 179.97438 * 7 6 5 10 10 C 1.54227 * 103.55707 * 359.97438 * 9 7 6 11 11 H 1.08993 * 110.60755 * 118.66953 * 10 9 7 12 12 N 1.46899 * 110.60428 * 241.48577 * 10 9 7 13 13 C 1.46854 * 110.99737 * 292.75248 * 12 10 9 14 14 C 1.53034 * 109.52158 * 185.84244 * 13 12 10 15 15 C 1.53122 * 109.27861 * 300.82219 * 14 13 12 16 16 C 1.52999 * 109.52109 * 177.56146 * 15 14 13 17 17 C 1.50699 * 109.46826 * 174.99974 * 16 15 14 18 18 H 1.07997 * 120.00555 * 0.02562 * 17 16 15 19 19 C 1.37886 * 119.99829 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00126 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99658 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47577 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46968 * 239.99222 * 21 19 17 24 24 H 1.48506 * 109.47030 * 119.99798 * 21 19 17 25 25 C 1.53117 * 109.16030 * 57.65545 * 15 14 13 26 26 C 1.46848 * 111.00290 * 56.96500 * 12 10 9 27 27 C 1.34221 * 122.71074 * 270.07178 * 6 5 4 28 28 O 1.21229 * 125.58195 * 0.02562 * 27 6 5 29 29 H 1.08996 * 109.47147 * 300.00381 * 1 2 3 30 30 H 1.09001 * 109.46756 * 60.00259 * 1 2 3 31 31 H 1.08991 * 109.47311 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47365 * 239.99248 * 2 1 3 33 33 H 1.08996 * 109.46818 * 299.99158 * 3 2 1 34 34 H 1.08996 * 109.47356 * 59.99747 * 3 2 1 35 35 H 1.09006 * 109.47193 * 179.97438 * 3 2 1 36 36 H 1.09006 * 109.46826 * 54.99711 * 4 2 1 37 37 H 1.09000 * 109.47128 * 295.00028 * 4 2 1 38 38 H 1.08994 * 109.47168 * 59.99956 * 5 4 2 39 39 H 1.09000 * 109.47132 * 300.00003 * 5 4 2 40 40 H 1.08999 * 110.60536 * 241.48051 * 9 7 6 41 41 H 1.09003 * 110.60322 * 118.51730 * 9 7 6 42 42 H 1.09001 * 109.45619 * 65.82706 * 13 12 10 43 43 H 1.08997 * 109.45386 * 305.85233 * 13 12 10 44 44 H 1.08997 * 109.50057 * 180.88299 * 14 13 12 45 45 H 1.09001 * 109.53942 * 60.78332 * 14 13 12 46 46 H 1.09004 * 109.52166 * 297.68758 * 15 14 13 47 47 H 1.08996 * 109.47137 * 55.00216 * 16 15 14 48 48 H 1.08999 * 109.47189 * 294.99644 * 16 15 14 49 49 H 0.97001 * 119.99717 * 0.02562 * 20 19 17 50 50 H 1.08996 * 109.50413 * 62.28702 * 25 15 14 51 51 H 1.08999 * 109.50289 * 182.40716 * 25 15 14 52 52 H 1.09001 * 109.45914 * 294.17622 * 26 12 10 53 53 H 1.08999 * 109.46288 * 54.15623 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.8310 1.1881 6 7 4.0530 -1.5222 2.3841 7 6 4.2014 -2.8513 2.4428 8 8 3.9587 -3.6255 1.5421 9 6 4.7215 -3.2341 3.8113 10 6 4.8498 -1.8813 4.5407 11 1 4.2043 -1.8561 5.4186 12 7 6.2463 -1.6289 4.9202 13 6 6.6926 -2.5795 5.9467 14 6 8.0966 -2.1978 6.4212 15 6 9.0564 -2.2182 5.2283 16 6 10.4489 -1.7786 5.6849 17 6 11.4194 -1.9161 4.5403 18 1 11.0773 -2.2802 3.5829 19 6 12.7445 -1.5771 4.7154 20 7 13.1611 -1.1332 5.8811 21 14 13.9473 -1.7469 3.2964 22 1 13.2333 -2.2635 2.1012 23 1 15.0280 -2.6928 3.6742 24 1 14.5372 -0.4199 2.9860 25 6 8.5427 -1.2561 4.1536 26 6 7.1258 -1.6650 3.7448 27 6 4.3861 -0.8739 3.5112 28 8 4.3275 0.3253 3.6788 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6768 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1301 1.4425 0.0005 36 1 1.6052 -1.7198 1.2953 37 1 1.7516 -0.1582 2.1370 38 1 3.9994 0.1674 1.1422 39 1 3.8532 -1.3940 0.3005 40 1 5.6941 -3.7195 3.7301 41 1 4.0103 -3.8813 4.3247 42 1 6.7120 -3.5851 5.5266 43 1 6.0039 -2.5518 6.7911 44 1 8.4338 -2.9126 7.1718 45 1 8.0757 -1.1978 6.8545 46 1 9.1086 -3.2275 4.8200 47 1 10.7742 -2.4062 6.5145 48 1 10.4136 -0.7382 6.0083 49 1 12.5363 -1.0447 6.6179 50 1 8.5283 -0.2411 4.5507 51 1 9.1987 -1.2980 3.2841 52 1 7.1432 -2.6749 3.3350 53 1 6.7519 -0.9732 2.9900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579353759.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:23 Heat of formation + Delta-G solvation = -111.014431 kcal Electronic energy + Delta-G solvation = -30393.440476 eV Core-core repulsion = 26456.120322 eV Total energy + Delta-G solvation = -3937.320154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.26207 -40.20579 -39.65243 -37.97815 -37.14561 -36.24523 -34.69910 -32.62838 -31.85789 -30.08193 -28.91590 -28.08750 -26.99488 -25.46655 -24.84261 -24.22370 -23.52001 -22.20719 -21.05319 -20.58109 -20.35135 -18.82940 -18.41355 -18.24894 -17.64729 -16.57707 -16.27851 -16.18524 -15.91513 -15.69634 -15.68143 -15.34807 -15.27083 -14.99205 -14.88598 -14.77755 -14.70321 -14.21929 -13.96362 -13.84352 -13.61440 -13.33440 -13.25304 -12.99564 -12.91447 -12.83699 -12.62353 -12.44390 -12.41721 -12.17392 -12.11532 -11.94886 -11.82820 -11.62370 -11.58054 -11.43139 -11.38496 -11.20289 -11.00618 -10.81047 -10.52422 -10.46598 -9.44253 -8.64747 -6.33813 0.35107 1.36219 1.50628 1.55266 1.60037 1.75466 2.56290 2.62353 3.05063 3.18796 3.19754 3.29296 3.70470 3.75099 3.81980 3.87482 3.89354 3.94841 4.07436 4.10312 4.26274 4.30723 4.34942 4.35822 4.45230 4.47979 4.53959 4.57446 4.69309 4.70409 4.71650 4.78921 4.80742 4.85689 4.95019 4.95089 5.00390 5.02610 5.02917 5.21493 5.23613 5.27250 5.31451 5.36660 5.41265 5.46750 5.64354 5.69250 5.85731 5.95428 6.07260 6.18840 6.23859 6.63483 6.65283 7.46934 8.75893 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.002513 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.123146 B =11138.171954 C =11818.483471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.119 4.119 5 C 0.090 3.910 6 N -0.575 5.575 7 C 0.533 3.467 8 O -0.512 6.512 9 C -0.186 4.186 10 C 0.060 3.940 11 H 0.167 0.833 12 N -0.524 5.524 13 C 0.066 3.934 14 C -0.110 4.110 15 C -0.069 4.069 16 C 0.016 3.984 17 C -0.603 4.603 18 H 0.050 0.950 19 C -0.044 4.044 20 N -0.943 5.943 21 Si 1.118 2.882 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.282 1.282 25 C -0.092 4.092 26 C 0.061 3.939 27 C 0.535 3.465 28 O -0.493 6.493 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.162 0.838 42 H 0.058 0.942 43 H 0.110 0.890 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.055 0.945 47 H -0.013 1.013 48 H -0.019 1.019 49 H 0.255 0.745 50 H 0.044 0.956 51 H 0.053 0.947 52 H 0.050 0.950 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.641 -2.995 -7.262 28.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.157 4.157 5 C -0.030 4.030 6 N -0.318 5.318 7 C 0.323 3.677 8 O -0.386 6.386 9 C -0.227 4.227 10 C -0.052 4.052 11 H 0.184 0.816 12 N -0.249 5.249 13 C -0.061 4.061 14 C -0.148 4.148 15 C -0.087 4.087 16 C -0.021 4.021 17 C -0.641 4.641 18 H 0.069 0.931 19 C -0.241 4.241 20 N -0.581 5.581 21 Si 0.940 3.060 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.208 1.208 25 C -0.129 4.129 26 C -0.067 4.067 27 C 0.324 3.676 28 O -0.364 6.364 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.143 0.857 41 H 0.179 0.821 42 H 0.076 0.924 43 H 0.128 0.872 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.005 0.995 48 H 0.000 1.000 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.071 0.929 52 H 0.068 0.932 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.214 -2.043 -7.897 27.454 hybrid contribution -1.052 -0.493 0.179 1.176 sum -27.266 -2.536 -7.718 28.451 Atomic orbital electron populations 1.21805 0.94026 1.02051 1.02292 1.21046 0.96719 0.96198 0.97085 1.21915 1.00896 0.95813 1.02205 1.21887 0.93080 1.01259 0.99499 1.22011 0.96222 0.98477 0.86290 1.47000 1.59123 1.10020 1.15682 1.21132 0.74817 0.80892 0.90832 1.90758 1.49180 1.54617 1.44006 1.23359 1.06829 1.00405 0.92134 1.22698 0.93107 0.90367 0.99012 0.81607 1.61953 0.99341 1.52473 1.11142 1.22188 0.96085 0.93173 0.94622 1.21642 0.94241 1.01710 0.97178 1.20994 0.94084 0.97975 0.95689 1.19193 0.93895 0.93676 0.95335 1.22491 0.96088 1.46674 0.98835 0.93148 1.27342 1.00520 0.93259 1.02968 1.70855 1.38628 1.45579 1.03035 0.82923 0.73748 0.77156 0.72194 1.19439 1.20469 1.20779 1.21359 0.94098 0.98759 0.98732 1.22100 0.92982 0.99805 0.91810 1.21091 0.74611 0.88721 0.83183 1.90755 1.50077 1.15253 1.80281 0.92723 0.91657 0.92458 0.90492 0.91579 0.92983 0.93012 0.91525 0.91904 0.89104 0.88844 0.85729 0.82050 0.92415 0.87184 0.90957 0.92787 0.92650 0.99489 1.00024 0.93551 0.93749 0.92873 0.93208 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.19 71.98 0.66 -0.94 16 2 C -0.09 -1.18 2.92 -10.79 -0.03 -1.22 16 3 C -0.15 -2.03 8.95 71.98 0.64 -1.39 16 4 C -0.12 -1.84 5.01 30.60 0.15 -1.69 16 5 C 0.09 1.66 5.31 86.38 0.46 2.12 16 6 N -0.58 -11.38 2.56 -756.18 -1.94 -13.32 16 7 C 0.53 10.33 8.08 88.00 0.71 11.04 16 8 O -0.51 -12.94 17.48 -2.84 -0.05 -12.99 16 9 C -0.19 -2.42 5.68 30.46 0.17 -2.25 16 10 C 0.06 0.98 3.20 44.78 0.14 1.12 16 11 H 0.17 1.68 8.12 -2.39 -0.02 1.66 16 12 N -0.52 -11.98 4.69 -871.91 -4.09 -16.06 16 13 C 0.07 1.32 5.14 86.32 0.44 1.77 16 14 C -0.11 -3.28 5.38 30.65 0.16 -3.11 16 15 C -0.07 -2.66 2.20 -10.71 -0.02 -2.68 16 16 C 0.02 0.82 3.76 29.85 0.11 0.93 16 17 C -0.60 -34.14 8.45 25.60 0.22 -33.93 16 18 H 0.05 2.78 7.08 -2.91 -0.02 2.76 16 19 C -0.04 -2.58 5.46 84.66 0.46 -2.12 16 20 N -0.94 -59.31 13.65 21.45 0.29 -59.02 16 21 Si 1.12 51.19 29.90 68.60 2.05 53.24 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 C -0.09 -3.38 5.15 30.65 0.16 -3.22 16 26 C 0.06 1.67 4.78 86.32 0.41 2.09 16 27 C 0.54 11.73 6.06 87.94 0.53 12.26 16 28 O -0.49 -14.31 17.50 -2.87 -0.05 -14.36 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 0.75 6.56 -2.38 -0.02 0.74 16 36 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.76 6.26 -2.39 -0.01 1.75 16 39 H 0.09 1.69 7.83 -2.39 -0.02 1.67 16 40 H 0.12 1.75 5.31 -2.39 -0.01 1.74 16 41 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 0.99 7.00 -2.39 -0.02 0.97 16 43 H 0.11 1.56 8.11 -2.39 -0.02 1.54 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 47 H -0.01 -0.72 8.01 -2.39 -0.02 -0.74 16 48 H -0.02 -1.04 8.01 -2.39 -0.02 -1.06 16 49 H 0.26 16.25 7.22 -92.71 -0.67 15.58 16 50 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.05 2.17 7.05 -2.39 -0.02 2.15 16 52 H 0.05 1.25 6.40 -2.39 -0.02 1.23 16 53 H 0.06 1.66 6.87 -2.39 -0.02 1.65 16 Total: -1.00 -73.92 407.50 2.59 -71.34 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.97 Total: 12.39 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 5.39 Total: -21.22 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -5.73 Total: -88.40 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.10 Total: -27.35 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.05 Total: 53.24 kcal Total: -73.92 2.59 -71.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579353759.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.677 kcal (2) G-P(sol) polarization free energy of solvation -73.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds