Wall clock time and date at job start Tue Mar 31 2020 20:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46859 * 2 1 4 4 C 1.52999 * 109.47083 * 119.99521 * 2 1 3 5 5 C 1.50693 * 109.47750 * 239.99784 * 2 1 3 6 6 O 1.21289 * 119.99680 * 3.59709 * 5 2 1 7 7 N 1.34772 * 120.00584 * 183.59570 * 5 2 1 8 8 C 1.47431 * 125.64702 * 4.63363 * 7 5 2 9 9 C 1.54901 * 104.83338 * 204.08912 * 8 7 5 10 10 C 1.55157 * 101.58203 * 322.99282 * 9 8 7 11 11 C 1.47026 * 125.65294 * 184.32070 * 7 5 2 12 12 H 1.09000 * 109.87838 * 59.55912 * 11 7 5 13 13 C 1.50696 * 109.88250 * 298.39916 * 11 7 5 14 14 O 1.21285 * 120.00036 * 339.06277 * 13 11 7 15 15 N 1.34773 * 120.00122 * 159.06248 * 13 11 7 16 16 C 1.46929 * 120.63512 * 185.15958 * 15 13 11 17 17 C 1.53185 * 108.77962 * 126.36808 * 16 15 13 18 18 C 1.53044 * 109.31093 * 54.63598 * 17 16 15 19 19 C 1.53039 * 109.53873 * 298.63587 * 18 17 16 20 20 H 1.09007 * 109.49748 * 301.41592 * 19 18 17 21 21 C 1.50699 * 109.49929 * 181.31746 * 19 18 17 22 22 H 1.07995 * 119.99923 * 240.00177 * 21 19 18 23 23 C 1.37883 * 119.99849 * 59.99621 * 21 19 18 24 24 N 1.31512 * 119.99974 * 0.02562 * 23 21 19 25 25 Si 1.86793 * 119.99760 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47190 * 60.00286 * 25 23 21 27 27 H 1.48507 * 109.47176 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47352 * 300.00224 * 25 23 21 29 29 C 1.46930 * 120.62920 * 4.87763 * 15 13 11 30 30 H 1.09004 * 109.46978 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47066 * 60.00683 * 1 2 3 32 32 H 1.08999 * 109.47642 * 300.00354 * 1 2 3 33 33 H 1.08997 * 109.47670 * 69.14825 * 3 2 1 34 34 H 1.09005 * 109.47204 * 189.15380 * 3 2 1 35 35 H 1.09009 * 109.47067 * 309.14589 * 3 2 1 36 36 H 1.08994 * 109.47422 * 60.00104 * 4 2 1 37 37 H 1.08996 * 109.47310 * 180.02562 * 4 2 1 38 38 H 1.09004 * 109.47254 * 299.99845 * 4 2 1 39 39 H 1.09005 * 110.36181 * 322.92956 * 8 7 5 40 40 H 1.08996 * 110.36420 * 85.13891 * 8 7 5 41 41 H 1.09006 * 111.00690 * 81.06220 * 9 8 7 42 42 H 1.08995 * 111.00821 * 204.87686 * 9 8 7 43 43 H 1.09002 * 110.72051 * 153.86860 * 10 9 8 44 44 H 1.09000 * 110.71821 * 277.13744 * 10 9 8 45 45 H 1.08997 * 109.58726 * 246.16165 * 16 15 13 46 46 H 1.09002 * 109.58663 * 6.43840 * 16 15 13 47 47 H 1.08999 * 109.49925 * 174.58852 * 17 16 15 48 48 H 1.09006 * 109.49808 * 294.65161 * 17 16 15 49 49 H 1.08994 * 109.46106 * 58.65892 * 18 17 16 50 50 H 1.09000 * 109.45707 * 178.62597 * 18 17 16 51 51 H 0.96998 * 119.99602 * 179.97438 * 24 23 21 52 52 H 1.09001 * 109.58316 * 353.42050 * 29 15 13 53 53 H 1.09003 * 109.58457 * 113.84388 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7104 -1.2303 6 8 1.2463 -1.1140 -2.0611 7 7 3.3553 -0.8973 -1.4077 8 6 4.4100 -0.5467 -0.4390 9 6 5.6885 -0.3630 -1.2941 10 6 5.5107 -1.4735 -2.3630 11 6 3.9852 -1.4905 -2.5963 12 1 3.7405 -0.8999 -3.4792 13 6 3.5072 -2.9083 -2.7760 14 8 3.0397 -3.5145 -1.8353 15 7 3.5991 -3.5027 -3.9821 16 6 3.0358 -4.8418 -4.2017 17 6 2.0926 -4.7884 -5.4076 18 6 2.8436 -4.2171 -6.6125 19 6 3.3072 -2.7929 -6.2984 20 1 2.4431 -2.1739 -6.0570 21 6 4.0183 -2.2195 -7.4970 22 1 5.0484 -1.9057 -7.4147 23 6 3.3538 -2.0958 -8.6988 24 7 2.0994 -2.4776 -8.7989 25 14 4.2355 -1.3857 -10.1846 26 1 5.4133 -2.2292 -10.5112 27 1 3.3083 -1.3591 -11.3444 28 1 4.6857 -0.0038 -9.8796 29 6 4.2592 -2.8214 -5.1041 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 0.5139 0.8899 33 1 1.8162 1.9071 0.9603 34 1 3.1176 1.4469 -0.1635 35 1 1.5493 2.0013 -0.7971 36 1 1.6767 -1.7488 1.2494 37 1 3.1299 -0.7208 1.2496 38 1 1.6766 -0.2072 2.1393 39 1 4.1602 0.3819 0.0742 40 1 4.5463 -1.3529 0.2817 41 1 5.7111 0.6240 -1.7563 42 1 6.5851 -0.5336 -0.6981 43 1 6.0406 -1.2149 -3.2797 44 1 5.8491 -2.4360 -1.9791 45 1 3.8412 -5.5493 -4.3987 46 1 2.4827 -5.1553 -3.3162 47 1 1.7425 -5.7940 -5.6404 48 1 1.2396 -4.1511 -5.1743 49 1 3.7102 -4.8415 -6.8297 50 1 2.1817 -4.2008 -7.4784 51 1 1.6318 -2.3901 -9.6443 52 1 4.5110 -1.8011 -4.8148 53 1 5.1665 -3.3607 -5.3763 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597913293.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:08 Heat of formation + Delta-G solvation = -93.475058 kcal Electronic energy + Delta-G solvation = -31915.449148 eV Core-core repulsion = 27978.889558 eV Total energy + Delta-G solvation = -3936.559590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.10607 -40.71697 -38.75654 -38.01900 -36.72770 -35.21908 -33.57502 -32.49415 -32.04338 -30.49537 -28.28267 -28.08653 -27.04595 -26.42209 -25.58296 -23.68315 -22.71837 -22.52084 -21.39015 -20.37372 -19.43360 -18.83093 -18.19405 -17.70470 -17.02647 -16.96180 -16.51322 -16.15898 -15.84674 -15.69548 -15.18426 -15.00204 -14.93557 -14.75147 -14.65418 -14.37434 -14.27721 -13.98177 -13.75452 -13.60665 -13.46831 -13.16188 -12.99213 -12.88432 -12.79520 -12.77767 -12.74786 -12.61686 -12.53863 -12.35001 -12.00525 -11.95544 -11.88301 -11.75566 -11.64177 -11.46551 -11.36035 -10.89571 -10.79576 -10.72412 -10.44165 -9.68942 -9.53838 -8.07977 -6.25045 1.39805 1.45325 1.46391 1.53813 1.64032 1.88928 2.20136 2.45529 3.19194 3.32772 3.41785 3.58990 3.66687 3.82573 3.89277 3.95134 4.10195 4.13394 4.14475 4.22644 4.25634 4.44722 4.47558 4.48767 4.53486 4.66130 4.70511 4.72362 4.75497 4.79589 4.82168 4.85551 4.88574 4.89160 4.92463 5.01503 5.04012 5.06983 5.16551 5.17806 5.21894 5.29289 5.31648 5.36821 5.39710 5.58075 5.61294 5.88812 6.06110 6.28956 6.42548 6.50249 6.87034 7.09353 7.18403 7.44475 8.96230 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.003506 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.561898 B = 7983.904618 C = 8148.900558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 C -0.142 4.142 4 C -0.145 4.145 5 C 0.524 3.476 6 O -0.592 6.592 7 N -0.600 5.600 8 C 0.080 3.920 9 C -0.118 4.118 10 C -0.116 4.116 11 C 0.112 3.888 12 H 0.079 0.921 13 C 0.506 3.494 14 O -0.582 6.582 15 N -0.606 5.606 16 C 0.120 3.880 17 C -0.125 4.125 18 C -0.103 4.103 19 C 0.036 3.964 20 H -0.023 1.023 21 C -0.530 4.530 22 H 0.070 0.930 23 C 0.011 3.989 24 N -0.920 5.920 25 Si 0.960 3.040 26 H -0.265 1.265 27 H -0.292 1.292 28 H -0.269 1.269 29 C 0.125 3.875 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.034 0.966 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.023 0.977 49 H 0.046 0.954 50 H 0.061 0.939 51 H 0.259 0.741 52 H 0.082 0.918 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.236 7.242 20.652 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.080 4.080 3 C -0.199 4.199 4 C -0.202 4.202 5 C 0.315 3.685 6 O -0.472 6.472 7 N -0.333 5.333 8 C -0.040 4.040 9 C -0.155 4.155 10 C -0.154 4.154 11 C 0.004 3.996 12 H 0.097 0.903 13 C 0.295 3.705 14 O -0.463 6.463 15 N -0.338 5.338 16 C -0.002 4.002 17 C -0.163 4.163 18 C -0.141 4.141 19 C 0.017 3.983 20 H -0.005 1.005 21 C -0.569 4.569 22 H 0.088 0.912 23 C -0.187 4.187 24 N -0.560 5.560 25 Si 0.785 3.215 26 H -0.189 1.189 27 H -0.218 1.218 28 H -0.194 1.194 29 C 0.003 3.997 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.137 0.863 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.141 0.859 43 H 0.126 0.874 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.042 0.958 49 H 0.065 0.935 50 H 0.079 0.921 51 H 0.068 0.932 52 H 0.101 0.899 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.358 6.714 20.600 23.223 hybrid contribution -0.779 -0.264 -1.712 1.900 sum 7.579 6.450 18.888 21.349 Atomic orbital electron populations 1.21677 0.92684 1.01371 1.02637 1.20826 0.97415 0.97787 0.91990 1.22056 1.02230 0.91289 1.04281 1.22103 1.03130 0.99333 0.95630 1.21328 0.80452 0.78361 0.88395 1.90721 1.56047 1.52575 1.47840 1.48400 1.06014 1.60202 1.18654 1.23134 0.86437 1.02499 0.91948 1.22884 0.97775 0.98796 0.96063 1.22688 0.88228 1.01673 1.02791 1.21664 0.97081 0.89877 0.90946 0.90273 1.21311 0.77729 0.89440 0.82065 1.90567 1.47842 1.66719 1.41139 1.48329 1.56610 1.18340 1.10534 1.21526 0.97198 0.83774 0.97741 1.21879 0.97549 1.00814 0.96056 1.21425 0.99003 0.96777 0.96871 1.18829 0.93461 0.93381 0.92616 1.00497 1.21410 0.98829 1.41475 0.95149 0.91152 1.25814 0.95385 0.95673 1.01876 1.70063 1.11373 1.48233 1.26293 0.85588 0.78350 0.79266 0.78309 1.18933 1.21801 1.19371 1.21887 0.95683 0.96849 0.85253 0.94729 0.93860 0.88444 0.88044 0.90081 0.93184 0.94714 0.89665 0.88318 0.86332 0.90468 0.88712 0.85946 0.87368 0.90264 0.89642 0.91317 0.90033 0.95758 0.93525 0.92073 0.93196 0.89938 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 7.76 71.98 0.56 -2.56 16 2 C -0.08 -1.77 0.75 -52.93 -0.04 -1.81 16 3 C -0.14 -2.16 8.28 71.98 0.60 -1.56 16 4 C -0.14 -2.55 8.18 71.98 0.59 -1.96 16 5 C 0.52 18.02 6.07 87.66 0.53 18.56 16 6 O -0.59 -27.98 15.66 -3.06 -0.05 -28.03 16 7 N -0.60 -17.36 2.73 -792.18 -2.17 -19.53 16 8 C 0.08 1.32 4.78 86.85 0.42 1.73 16 9 C -0.12 -1.45 7.09 31.98 0.23 -1.22 16 10 C -0.12 -2.36 6.11 31.78 0.19 -2.17 16 11 C 0.11 3.59 2.35 44.59 0.10 3.70 16 12 H 0.08 2.88 6.69 -2.39 -0.02 2.86 16 13 C 0.51 20.47 6.01 87.66 0.53 21.00 16 14 O -0.58 -26.75 15.62 -3.04 -0.05 -26.80 16 15 N -0.61 -24.57 2.98 -819.74 -2.44 -27.01 16 16 C 0.12 4.71 6.42 86.36 0.55 5.27 16 17 C -0.12 -5.37 6.08 30.67 0.19 -5.18 16 18 C -0.10 -4.97 4.96 30.62 0.15 -4.82 16 19 C 0.04 1.84 2.24 -11.61 -0.03 1.81 16 20 H -0.02 -1.41 8.14 -2.38 -0.02 -1.42 16 21 C -0.53 -27.98 8.56 25.60 0.22 -27.77 16 22 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 23 C 0.01 0.61 5.30 84.66 0.45 1.06 16 24 N -0.92 -54.05 11.31 21.45 0.24 -53.80 16 25 Si 0.96 42.46 29.54 68.60 2.03 44.49 16 26 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 28 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 29 C 0.12 5.01 5.40 86.22 0.47 5.47 16 30 H 0.03 1.01 8.13 -2.39 -0.02 0.99 16 31 H 0.04 1.21 8.06 -2.39 -0.02 1.20 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 33 H 0.10 0.91 8.12 -2.39 -0.02 0.89 16 34 H 0.08 0.99 5.00 -2.38 -0.01 0.98 16 35 H 0.05 0.91 8.12 -2.38 -0.02 0.89 16 36 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 1.20 4.38 -2.39 -0.01 1.19 16 38 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.12 1.25 4.29 -2.38 -0.01 1.24 16 40 H 0.08 1.24 7.27 -2.39 -0.02 1.22 16 41 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.11 1.92 7.77 -2.39 -0.02 1.91 16 44 H 0.08 1.66 7.83 -2.39 -0.02 1.64 16 45 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 46 H 0.07 2.81 7.04 -2.39 -0.02 2.79 16 47 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 48 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 49 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.06 3.39 6.04 -2.39 -0.01 3.38 16 51 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 52 H 0.08 3.04 5.04 -2.39 -0.01 3.03 16 53 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -81.57 394.90 4.16 -77.41 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.89 Total: 23.71 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 5.70 Total: 9.55 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -4.37 Total: -100.34 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -0.10 Total: -54.83 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -81.57 4.16 -77.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597913293.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.061 kcal (2) G-P(sol) polarization free energy of solvation -81.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds